Incidental Mutation 'R1774:Tspear'
ID 196944
Institutional Source Beutler Lab
Gene Symbol Tspear
Ensembl Gene ENSMUSG00000069581
Gene Name thrombospondin type laminin G domain and EAR repeats
Synonyms C330046G03Rik, ORF65
MMRRC Submission 039805-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.067) question?
Stock # R1774 (G1)
Quality Score 225
Status Not validated
Chromosome 10
Chromosomal Location 77522403-77722855 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 77709019 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Isoleucine at position 415 (T415I)
Ref Sequence ENSEMBL: ENSMUSP00000090020 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000092366]
AlphaFold J3S6Y1
Predicted Effect probably benign
Transcript: ENSMUST00000092366
AA Change: T415I

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)
SMART Domains Protein: ENSMUSP00000090020
Gene: ENSMUSG00000069581
AA Change: T415I

DomainStartEndE-ValueType
Blast:TSPN 1 71 8e-40 BLAST
SCOP:d1c4ra_ 2 67 2e-7 SMART
low complexity region 190 200 N/A INTRINSIC
Pfam:EPTP 208 255 2.6e-22 PFAM
Pfam:EPTP 260 307 1.4e-21 PFAM
Pfam:EPTP 312 359 8.9e-14 PFAM
Pfam:EPTP 362 417 6.2e-13 PFAM
Pfam:EPTP 422 469 1.3e-20 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000092368
SMART Domains Protein: ENSMUSP00000090022
Gene: ENSMUSG00000069581

DomainStartEndE-ValueType
TSPN 3 174 2.24e-5 SMART
LamG 34 173 1.09e-1 SMART
low complexity region 293 303 N/A INTRINSIC
Pfam:EPTP 311 357 3.4e-20 PFAM
Pfam:EPTP 362 409 4.9e-23 PFAM
Pfam:EPTP 414 461 3.1e-15 PFAM
Pfam:EPTP 464 519 2.2e-14 PFAM
Coding Region Coverage
  • 1x: 97.4%
  • 3x: 96.8%
  • 10x: 95.2%
  • 20x: 92.0%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that contains a N-terminal thrombospondin-type laminin G domain and several tandem arranged epilepsy-associated repeats (EARs). A mutation in this gene is the cause of autosomal recessive deafness-98. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Dec 2012]
Allele List at MGI
Other mutations in this stock
Total: 85 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700018F24Rik T C 5: 144,982,351 (GRCm39) V312A probably damaging Het
2810408A11Rik A G 11: 69,791,453 (GRCm39) V42A probably damaging Het
Akap8l C T 17: 32,551,457 (GRCm39) R511H probably damaging Het
Angpt1 T A 15: 42,387,012 (GRCm39) Q114L probably damaging Het
Apc2 T C 10: 80,144,964 (GRCm39) I625T probably damaging Het
Atg2a T C 19: 6,300,628 (GRCm39) V735A probably benign Het
Birc6 T A 17: 74,947,008 (GRCm39) I2909N probably damaging Het
C7 C G 15: 5,041,557 (GRCm39) D450H probably damaging Het
Cachd1 C T 4: 100,821,632 (GRCm39) T403I probably damaging Het
Cachd1 T A 4: 100,824,240 (GRCm39) F560L probably benign Het
Cacna2d2 A T 9: 107,403,350 (GRCm39) Y944F probably benign Het
Cdkal1 C T 13: 30,034,031 (GRCm39) D21N probably damaging Het
Col18a1 T C 10: 76,895,815 (GRCm39) R901G probably damaging Het
Col27a1 C T 4: 63,143,950 (GRCm39) P546L probably damaging Het
Cps1 C T 1: 67,210,041 (GRCm39) R624W possibly damaging Het
Cyp11a1 A T 9: 57,925,643 (GRCm39) I93F probably benign Het
Cyp2c40 G C 19: 39,775,250 (GRCm39) T334R probably damaging Het
Cyp4f37 A G 17: 32,848,864 (GRCm39) D244G possibly damaging Het
D630003M21Rik A T 2: 158,062,390 (GRCm39) D43E probably damaging Het
Ep400 C A 5: 110,833,357 (GRCm39) C1955F unknown Het
Ethe1 G A 7: 24,293,371 (GRCm39) V6I probably benign Het
F5 C A 1: 164,020,104 (GRCm39) Q860K probably benign Het
Fasn T C 11: 120,707,997 (GRCm39) Y685C probably damaging Het
Gga2 T G 7: 121,611,444 (GRCm39) D38A probably damaging Het
Gm43302 T A 5: 105,423,660 (GRCm39) I438F probably benign Het
Grm1 T A 10: 10,955,610 (GRCm39) T225S possibly damaging Het
Hic2 G T 16: 17,076,511 (GRCm39) V447L probably damaging Het
Hsf2 G A 10: 57,388,242 (GRCm39) C462Y probably damaging Het
Ice1 T C 13: 70,752,672 (GRCm39) D1138G probably damaging Het
Il6 A G 5: 30,224,433 (GRCm39) T158A probably benign Het
Inpp5d T A 1: 87,595,611 (GRCm39) V120E probably benign Het
Iqca1 T C 1: 90,008,625 (GRCm39) N456S probably benign Het
Itgal T A 7: 126,908,794 (GRCm39) probably null Het
Lrrc66 G C 5: 73,768,198 (GRCm39) Q248E probably benign Het
Lrrc7 T A 3: 157,865,929 (GRCm39) M1271L possibly damaging Het
Lrrc74a T C 12: 86,795,827 (GRCm39) S267P probably damaging Het
Map2 T C 1: 66,453,233 (GRCm39) S550P probably damaging Het
Mapk8ip3 A T 17: 25,143,119 (GRCm39) probably null Het
Mdm4 A C 1: 132,924,384 (GRCm39) S246A probably damaging Het
Med23 A G 10: 24,779,584 (GRCm39) E887G probably damaging Het
Mta1 C T 12: 113,091,659 (GRCm39) A254V probably damaging Het
Myh2 A G 11: 67,064,300 (GRCm39) Y85C possibly damaging Het
Myo1g A G 11: 6,465,988 (GRCm39) Y366H probably damaging Het
Nalcn G A 14: 123,515,678 (GRCm39) P1708S probably benign Het
Nlrp9c A T 7: 26,093,543 (GRCm39) S41T probably benign Het
Nptx2 T A 5: 144,490,248 (GRCm39) S226T possibly damaging Het
Nup85 T A 11: 115,473,771 (GRCm39) S562T probably benign Het
Nxpe5 T C 5: 138,237,797 (GRCm39) V107A probably benign Het
Obi1 A G 14: 104,717,098 (GRCm39) V425A possibly damaging Het
Oga T C 19: 45,765,423 (GRCm39) E128G probably benign Het
Or10ac1 A T 6: 42,515,453 (GRCm39) F168I probably damaging Het
Or10al7 A G 17: 38,366,328 (GRCm39) V43A probably benign Het
Or13c3 T A 4: 52,855,674 (GRCm39) I280F probably benign Het
Or6p1 A G 1: 174,258,905 (GRCm39) T304A probably benign Het
Pcdhb12 C T 18: 37,569,495 (GRCm39) P214S possibly damaging Het
Pcdhb5 T A 18: 37,455,725 (GRCm39) F702I probably damaging Het
Pcnx1 T C 12: 82,022,094 (GRCm39) F1475S probably damaging Het
Pde5a C A 3: 122,523,013 (GRCm39) T40N probably benign Het
Pnpla2 T A 7: 141,039,481 (GRCm39) V398E probably damaging Het
Pramel19 G A 4: 101,797,655 (GRCm39) V18M probably benign Het
Pwwp4a G T X: 72,171,261 (GRCm39) G218C probably damaging Het
Rab20 T C 8: 11,504,223 (GRCm39) K159R probably benign Het
Rfwd3 C T 8: 112,014,874 (GRCm39) R326Q probably damaging Het
Rgs12 T A 5: 35,123,747 (GRCm39) V510D probably benign Het
Slamf6 T C 1: 171,770,154 (GRCm39) probably benign Het
Slc27a5 A T 7: 12,731,534 (GRCm39) C23* probably null Het
Slc35e2 T C 4: 155,694,621 (GRCm39) V56A possibly damaging Het
Slx4ip T C 2: 136,909,643 (GRCm39) S143P probably damaging Het
Stat5a C T 11: 100,770,112 (GRCm39) S463F probably damaging Het
Svep1 T C 4: 58,146,562 (GRCm39) D360G possibly damaging Het
Tas2r143 A T 6: 42,377,305 (GRCm39) D45V probably damaging Het
Tdrd5 G T 1: 156,105,079 (GRCm39) R516S probably damaging Het
Thy1 A G 9: 43,958,636 (GRCm39) D126G probably benign Het
Ttll5 C A 12: 85,980,176 (GRCm39) T920K probably benign Het
Tut4 T C 4: 108,365,152 (GRCm39) F542L probably damaging Het
Umod T C 7: 119,076,574 (GRCm39) E64G possibly damaging Het
Usf3 A G 16: 44,036,033 (GRCm39) N171S probably damaging Het
Vmn1r23 T A 6: 57,903,675 (GRCm39) R34S probably damaging Het
Wasf1 C G 10: 40,810,475 (GRCm39) P239R possibly damaging Het
Wdr95 C T 5: 149,487,857 (GRCm39) R164* probably null Het
Zan C A 5: 137,418,251 (GRCm39) C2949F unknown Het
Zbed4 T C 15: 88,665,080 (GRCm39) S383P probably benign Het
Zfand5 T A 19: 21,253,895 (GRCm39) C33S probably damaging Het
Zfp12 A G 5: 143,230,984 (GRCm39) Y437C probably damaging Het
Zfp451 A C 1: 33,852,849 (GRCm39) S22A probably benign Het
Other mutations in Tspear
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00340:Tspear APN 10 77,709,070 (GRCm39) missense probably benign 0.30
IGL01726:Tspear APN 10 77,717,121 (GRCm39) intron probably benign
IGL02244:Tspear APN 10 77,688,690 (GRCm39) unclassified probably benign
IGL02393:Tspear APN 10 77,672,407 (GRCm39) missense probably damaging 1.00
IGL02502:Tspear APN 10 77,688,792 (GRCm39) intron probably benign
IGL02653:Tspear APN 10 77,542,799 (GRCm39) utr 3 prime probably benign
IGL03345:Tspear APN 10 77,710,716 (GRCm39) splice site probably null
R0058:Tspear UTSW 10 77,705,465 (GRCm39) missense probably benign 0.07
R0058:Tspear UTSW 10 77,705,465 (GRCm39) missense probably benign 0.07
R0542:Tspear UTSW 10 77,716,921 (GRCm39) missense probably benign 0.14
R1384:Tspear UTSW 10 77,702,166 (GRCm39) missense probably benign 0.44
R1467:Tspear UTSW 10 77,717,026 (GRCm39) missense probably damaging 1.00
R1467:Tspear UTSW 10 77,717,026 (GRCm39) missense probably damaging 1.00
R1545:Tspear UTSW 10 77,706,253 (GRCm39) missense possibly damaging 0.48
R1625:Tspear UTSW 10 77,706,333 (GRCm39) missense probably benign 0.20
R1635:Tspear UTSW 10 77,706,253 (GRCm39) missense possibly damaging 0.48
R1636:Tspear UTSW 10 77,706,253 (GRCm39) missense possibly damaging 0.48
R1637:Tspear UTSW 10 77,706,253 (GRCm39) missense possibly damaging 0.48
R1744:Tspear UTSW 10 77,700,718 (GRCm39) splice site probably null
R1749:Tspear UTSW 10 77,705,507 (GRCm39) missense probably benign 0.00
R1768:Tspear UTSW 10 77,710,950 (GRCm39) critical splice donor site probably null
R1791:Tspear UTSW 10 77,706,253 (GRCm39) missense possibly damaging 0.48
R1892:Tspear UTSW 10 77,706,308 (GRCm39) missense probably benign 0.00
R2014:Tspear UTSW 10 77,710,954 (GRCm39) splice site probably benign
R2108:Tspear UTSW 10 77,706,253 (GRCm39) missense possibly damaging 0.48
R2248:Tspear UTSW 10 77,709,103 (GRCm39) missense probably damaging 1.00
R3038:Tspear UTSW 10 77,722,273 (GRCm39) nonsense probably null
R4010:Tspear UTSW 10 77,672,310 (GRCm39) intron probably benign
R4661:Tspear UTSW 10 77,702,163 (GRCm39) missense probably benign 0.24
R4734:Tspear UTSW 10 77,700,529 (GRCm39) missense probably damaging 0.99
R4789:Tspear UTSW 10 77,702,199 (GRCm39) missense possibly damaging 0.63
R4804:Tspear UTSW 10 77,612,791 (GRCm39) splice site probably null
R4904:Tspear UTSW 10 77,705,489 (GRCm39) missense possibly damaging 0.93
R4937:Tspear UTSW 10 77,710,877 (GRCm39) missense probably damaging 0.98
R4956:Tspear UTSW 10 77,700,601 (GRCm39) missense possibly damaging 0.86
R5590:Tspear UTSW 10 77,706,199 (GRCm39) missense probably benign
R6344:Tspear UTSW 10 77,710,847 (GRCm39) missense possibly damaging 0.95
R6629:Tspear UTSW 10 77,706,343 (GRCm39) missense probably benign 0.08
R7611:Tspear UTSW 10 77,717,049 (GRCm39) missense probably benign 0.01
R8507:Tspear UTSW 10 77,710,898 (GRCm39) missense probably benign 0.01
R8811:Tspear UTSW 10 77,665,463 (GRCm39) missense probably benign 0.08
R8856:Tspear UTSW 10 77,665,471 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- GAACTGAAAACCGTGTTTTCTGTCCC -3'
(R):5'- CACCCTTGCTCACAAAGTATGCAATG -3'

Sequencing Primer
(F):5'- TGAGCATGTCCTAGCACCAG -3'
(R):5'- CAATGGTTTCCTTCCAGGTCAAAG -3'
Posted On 2014-05-23