Mutagenetix > Incidental Mutation

Incidental Mutation 'R1778:Vnn1'

197253

Institutional Source

Beutler Lab

Gene Symbol

Vnn1

Ensembl Gene

ENSMUSG00000037440

Gene Name

vanin 1

Synonyms

V-1, pantetheinase

MMRRC Submission

039809-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.108) question?

Stock #

R1778 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

23894688-23905343 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 23899517 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Serine at position 222 (A222S)

Ref Sequence

ENSEMBL: ENSMUSP00000040599 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041416]

AlphaFold

Q9Z0K8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000041416
AA Change: A222S

PolyPhen 2 Score 0.670 (Sensitivity: 0.86; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000040599
Gene: ENSMUSG00000037440
AA Change: A222S

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
Pfam:CN_hydrolase	52	279	2.5e-19	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219254

Meta Mutation Damage Score

0.2071

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.6%
20x: 93.3%

Validation Efficiency

98% (107/109)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the vanin family of proteins, which share extensive sequence similarity with each other, and also with biotinidase. The family includes secreted and membrane-associated proteins, a few of which have been reported to participate in hematopoietic cell trafficking. No biotinidase activity has been demonstrated for any of the vanin proteins, however, they possess pantetheinase activity, which may play a role in oxidative-stress response. This protein, like its mouse homolog, is likely a GPI-anchored cell surface molecule. The mouse protein is expressed by the perivascular thymic stromal cells and regulates migration of T-cell progenitors to the thymus. This gene lies in close proximity to, and in the same transcriptional orientation as, two other vanin genes on chromosome 6q23-q24. [provided by RefSeq, Feb 2009]
PHENOTYPE: Mice homozygous for disruptions of this gene develop normally and so no abnormalities in the maturation of lymphoid organs. However, membrane bound pantetheinase is absent in livers and kidneys resuulting in an absence of cysteamine in these organs. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1810043G02Rik	G	T	10: 77,982,944	A150S	probably benign	Het
4930432E11Rik	T	C	7: 29,560,706		noncoding transcript	Het
4930568D16Rik	A	G	2: 35,354,983	M119T	probably damaging	Het
Aadacl2	A	G	3: 60,017,450		probably null	Het
Abca9	C	T	11: 110,130,716	W1056*	probably null	Het
Adam20	A	C	8: 40,796,661	T603P	possibly damaging	Het
Adgrl1	T	C	8: 83,930,037	L323P	probably damaging	Het
Afap1l2	C	T	19: 56,916,206	E628K	possibly damaging	Het
Ahctf1	A	T	1: 179,753,015	L1874Q	possibly damaging	Het
Ak8	A	G	2: 28,712,321	E89G	probably benign	Het
Aldh16a1	G	A	7: 45,147,308	R256C	probably damaging	Het
Anxa5	G	A	3: 36,465,331	T3M	probably damaging	Het
Arhgef16	T	C	4: 154,287,986	K210E	probably benign	Het
Armc4	A	T	18: 7,127,388	C942S	probably damaging	Het
Baz2b	T	C	2: 60,006,136	T18A	unknown	Het
BC037034	T	C	5: 138,262,477		probably null	Het
Bub1	A	C	2: 127,803,122	I960M	possibly damaging	Het
Cbln2	G	T	18: 86,713,147	D27Y	probably benign	Het
Ces2h	C	A	8: 105,014,607	P77Q	possibly damaging	Het
Chga	T	A	12: 102,561,700	M150K	probably benign	Het
Chmp3	A	G	6: 71,577,807	E162G	probably benign	Het
Clip3	A	G	7: 30,297,436	N161S	probably damaging	Het
Col12a1	T	A	9: 79,604,585		probably benign	Het
Cuedc2	C	T	19: 46,331,640	G105D	probably benign	Het
Cyp2j7	A	C	4: 96,199,390	F428V	probably damaging	Het
Ddx60	A	G	8: 61,974,176	I762V	possibly damaging	Het
Def6	G	A	17: 28,220,186	R257Q	probably benign	Het
Dkkl1	A	T	7: 45,211,395		probably null	Het
Dnah3	A	G	7: 120,078,402	L433P	probably damaging	Het
Eif2s3y	C	T	Y: 1,011,287	R33C	probably benign	Het
Elavl2	T	A	4: 91,253,478	Y269F	probably damaging	Het
Esco2	A	G	14: 65,831,262	S200P	possibly damaging	Het
Fam213b	A	T	4: 154,897,357	V151D	probably damaging	Het
Fcrl1	T	A	3: 87,385,319		probably benign	Het
Fhod1	C	A	8: 105,329,677	D1135Y	probably damaging	Het
Fnbp1l	T	C	3: 122,590,147	N41D	possibly damaging	Het
Folh1	A	T	7: 86,761,699		probably null	Het
Fpr-rs7	T	C	17: 20,114,015	D71G	probably damaging	Het
Gm10271	A	G	10: 116,961,939		probably benign	Het
Gm4841	A	T	18: 60,270,948	Y24*	probably null	Het
Gm9825	A	T	6: 7,983,124		noncoding transcript	Het
Greb1	G	A	12: 16,690,894	R1396C	probably benign	Het
Hectd1	C	T	12: 51,753,807	C2076Y	probably damaging	Het
Hnrnpu	A	G	1: 178,325,241		probably benign	Het
Ice2	T	C	9: 69,415,648	I475T	probably benign	Het
Ifit1bl1	T	A	19: 34,594,193	Q288L	probably damaging	Het
Ik	T	C	18: 36,756,818		probably benign	Het
Kidins220	C	T	12: 25,013,446		probably benign	Het
Kmt2c	T	C	5: 25,372,974	D768G	probably benign	Het
Kmt2e	A	G	5: 23,492,364	T87A	probably damaging	Het
Lama5	G	A	2: 180,195,481		probably benign	Het
Lmbr1l	A	G	15: 98,912,476	S85P	probably damaging	Het
Lrig2	A	G	3: 104,467,366		probably benign	Het
Lrig3	A	G	10: 126,010,075	D791G	probably damaging	Het
Lrrc2	G	A	9: 110,980,840	V315M	probably benign	Het
Lrrc4b	A	G	7: 44,462,399	D565G	probably benign	Het
Mpped1	C	T	15: 83,791,990		probably benign	Het
Msrb2	T	A	2: 19,383,303	D87E	probably benign	Het
Muc20	T	C	16: 32,794,141	T289A	possibly damaging	Het
Myo15	C	A	11: 60,478,412	P666Q	possibly damaging	Het
Nfat5	C	T	8: 107,361,789	P579L	probably damaging	Het
Nipbl	A	C	15: 8,319,488	M1920R	probably damaging	Het
Nuak1	T	C	10: 84,374,874		probably null	Het
Nup210l	A	G	3: 90,189,486	E1334G	probably damaging	Het
Olfr12	G	A	1: 92,620,620	G238E	possibly damaging	Het
Olfr1410	A	T	1: 92,608,109	N91Y	possibly damaging	Het
Olfr262	T	A	19: 12,241,455	I69F	probably benign	Het
Olfr675	A	T	7: 105,024,163	N272K	probably benign	Het
Olfr804	T	C	10: 129,705,705	Y276H	probably benign	Het
P4ha3	A	T	7: 100,300,691		probably null	Het
Pbld2	C	T	10: 63,054,371	A186V	probably benign	Het
Pcdh18	A	T	3: 49,755,634	Y411N	probably benign	Het
Pgf	A	G	12: 85,171,767	S70P	probably benign	Het
Phrf1	T	A	7: 141,232,456	D44E	probably benign	Het
Pla2g4a	A	G	1: 149,902,445		probably benign	Het
Plce1	A	G	19: 38,780,790		probably benign	Het
Plxna2	A	G	1: 194,810,970	N1851S	probably benign	Het
Prl7a2	G	A	13: 27,659,271	T183I	probably damaging	Het
Ptger4	A	T	15: 5,235,095	L335H	probably damaging	Het
Ptgr1	A	G	4: 58,984,865		probably benign	Het
Rdh7	A	G	10: 127,884,721	S261P	probably benign	Het
Reg3a	A	G	6: 78,383,286	T150A	probably benign	Het
Rnf111	A	G	9: 70,476,112	S180P	probably benign	Het
Rnf17	A	G	14: 56,522,399	M1554V	probably damaging	Het
Rnf215	T	A	11: 4,135,873	Y117*	probably null	Het
Rogdi	T	C	16: 5,010,505	T165A	probably benign	Het
Rpe65	A	G	3: 159,622,848	Y431C	probably damaging	Het
Scube1	A	G	15: 83,610,204	F844S	probably damaging	Het
Sdr16c6	T	A	4: 4,058,814	E257D	probably benign	Het
Sim1	C	A	10: 50,981,553	C466*	probably null	Het
Spi1	T	A	2: 91,099,522	H46Q	probably damaging	Het
Sumf2	C	A	5: 129,845,068		probably benign	Het
Tbcb	A	G	7: 30,231,612	Y28H	probably benign	Het
Tecta	C	T	9: 42,343,631	C1752Y	probably damaging	Het
Tep1	T	C	14: 50,829,622		probably benign	Het
Tmem245	A	T	4: 56,903,968	W591R	probably damaging	Het
Tnxb	A	G	17: 34,683,574	I1134V	probably benign	Het
Trim13	G	T	14: 61,605,619	A362S	probably benign	Het
Trim47	T	A	11: 116,109,820	D134V	probably damaging	Het
Ttc26	T	A	6: 38,409,476	D377E	possibly damaging	Het
Utrn	C	A	10: 12,436,364	D616Y	probably damaging	Het
Wdr17	A	G	8: 54,690,214	W110R	probably damaging	Het
Wwp1	G	T	4: 19,627,892	Y700*	probably null	Het
Zbtb21	T	C	16: 97,950,585	S661G	probably benign	Het
Zfp955b	A	G	17: 33,302,814	K419R	probably benign	Het

Other mutations in Vnn1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00838:Vnn1	APN	10	23900779	missense	possibly damaging	0.51
IGL01299:Vnn1	APN	10	23895051	missense	probably damaging	1.00
IGL01353:Vnn1	APN	10	23900840	missense	probably damaging	1.00
IGL01774:Vnn1	APN	10	23900710	missense	probably benign	0.26
IGL01970:Vnn1	APN	10	23897402	missense	probably benign	0.06
IGL01985:Vnn1	APN	10	23900744	missense	probably benign	0.00
IGL02019:Vnn1	APN	10	23903551	missense	possibly damaging	0.69
IGL02198:Vnn1	APN	10	23903425	missense	probably benign	0.00
IGL02349:Vnn1	APN	10	23898503	missense	possibly damaging	0.91
IGL02738:Vnn1	APN	10	23904622	missense	probably benign	0.00
IGL03058:Vnn1	APN	10	23904544	missense	probably benign	0.06
R0008:Vnn1	UTSW	10	23898602	critical splice donor site	probably null
R0030:Vnn1	UTSW	10	23900846	missense	probably benign	0.08
R0508:Vnn1	UTSW	10	23895012	missense	probably benign	0.01
R0781:Vnn1	UTSW	10	23899601	missense	possibly damaging	0.46
R1110:Vnn1	UTSW	10	23899601	missense	possibly damaging	0.46
R1757:Vnn1	UTSW	10	23900828	missense	possibly damaging	0.49
R1757:Vnn1	UTSW	10	23900829	missense	probably benign	0.00
R2011:Vnn1	UTSW	10	23894971	nonsense	probably null
R2055:Vnn1	UTSW	10	23900577	splice site	probably benign
R2158:Vnn1	UTSW	10	23900755	nonsense	probably null
R2186:Vnn1	UTSW	10	23897401	missense	probably benign	0.29
R4277:Vnn1	UTSW	10	23898512	missense	possibly damaging	0.89
R4279:Vnn1	UTSW	10	23898512	missense	possibly damaging	0.89
R4473:Vnn1	UTSW	10	23894891	missense	probably benign
R4590:Vnn1	UTSW	10	23899405	missense	possibly damaging	0.61
R4708:Vnn1	UTSW	10	23897352	missense	probably benign	0.01
R4794:Vnn1	UTSW	10	23900704	missense	probably benign	0.01
R5266:Vnn1	UTSW	10	23903405	missense	probably damaging	1.00
R5495:Vnn1	UTSW	10	23898564	missense	probably damaging	0.98
R6064:Vnn1	UTSW	10	23894909	missense	probably benign	0.05
R7081:Vnn1	UTSW	10	23895005	missense	possibly damaging	0.66
R7088:Vnn1	UTSW	10	23900747	missense	probably benign	0.00
R7221:Vnn1	UTSW	10	23895054	missense	probably benign	0.07
R7334:Vnn1	UTSW	10	23900760	missense	probably benign	0.04
R8784:Vnn1	UTSW	10	23904628	missense	probably benign
R8859:Vnn1	UTSW	10	23904586	missense	probably benign	0.01
R8926:Vnn1	UTSW	10	23900689	missense	probably benign	0.04
R8987:Vnn1	UTSW	10	23900816	missense	probably damaging	0.98
R9002:Vnn1	UTSW	10	23899451	missense	possibly damaging	0.82
R9091:Vnn1	UTSW	10	23904566	missense	probably damaging	1.00
R9270:Vnn1	UTSW	10	23904566	missense	probably damaging	1.00
R9276:Vnn1	UTSW	10	23900896	missense	probably damaging	1.00
R9453:Vnn1	UTSW	10	23900825	missense	probably damaging	0.96
R9557:Vnn1	UTSW	10	23900825	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- AGCTTCCTGGACTTTTATTCCCCTGA -3'
(R):5'- CTGTGCAATATCCCACACAGAGAGAAA -3'

Sequencing Primer
(F):5'- CCTGAATTGTTTGTTCATTACAGC -3'
(R):5'- cacacacacacacacacac -3'

Posted On

2014-05-23