Mutagenetix > Incidental Mutations

Incidental Mutation 'R1468:Ldhd'

197728

Institutional Source

Beutler Lab

Gene Symbol

Ldhd

Ensembl Gene

ENSMUSG00000031958

Gene Name

lactate dehydrogenase D

Synonyms

D8Bwg1320e, 4733401P21Rik

MMRRC Submission

039521-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.190) question?

Stock #

R1468 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

111623785-111630374 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 111627293 bp

Zygosity

Heterozygous

Amino Acid Change

Alanine to Glutamic Acid at position 425 (A425E)

Ref Sequence

ENSEMBL: ENSMUSP00000068086 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070004] [ENSMUST00000095176] [ENSMUST00000166859] [ENSMUST00000168428] [ENSMUST00000171182] [ENSMUST00000172856] [ENSMUST00000173506] [ENSMUST00000174333] [ENSMUST00000174454]

Predicted Effect

possibly damaging
Transcript: ENSMUST00000070004
AA Change: A425E

PolyPhen 2 Score 0.900 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000068086
Gene: ENSMUSG00000031958
AA Change: A425E

Domain	Start	End	E-Value	Type
Pfam:FAD_binding_4	66	203	5.2e-38	PFAM
Pfam:FAD-oxidase_C	242	483	3.5e-74	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000095176

SMART Domains

Protein: ENSMUSP00000092799
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	184	224	2.98e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000166859

SMART Domains

Protein: ENSMUSP00000132939
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	84	124	2.98e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000168428

SMART Domains

Protein: ENSMUSP00000126684
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	184	224	2.98e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000171182

SMART Domains

Protein: ENSMUSP00000127956
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	152	192	2.98e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000172856

SMART Domains

Protein: ENSMUSP00000133309
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	184	224	2.98e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000173506

SMART Domains

Protein: ENSMUSP00000133993
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	184	224	2.98e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173521

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173909

Predicted Effect

probably benign
Transcript: ENSMUST00000173922

Predicted Effect

probably benign
Transcript: ENSMUST00000174333

SMART Domains

Protein: ENSMUSP00000134634
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	84	124	2.98e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000174376

Predicted Effect

probably benign
Transcript: ENSMUST00000174454

SMART Domains

Protein: ENSMUSP00000133519
Gene: ENSMUSG00000033545

Domain	Start	End	E-Value	Type
RING	22	62	2.98e-3	SMART

Meta Mutation Damage Score

0.2440

Coding Region Coverage

1x: 97.4%
3x: 96.7%
10x: 94.6%
20x: 90.1%

Validation Efficiency

98% (106/108)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. The similar protein in yeast has both D-lactate and D-glycerate dehydrogenase activities. Alternative splicing occurs at this locus and two transcript variants encoding distinct isoforms have been identified. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 112 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900092C05Rik	T	G	7: 12,512,580	M1R	probably null	Het
4933440N22Rik	C	A	6: 117,907,579		probably benign	Het
5031439G07Rik	G	T	15: 84,953,144	P280T	probably damaging	Het
Abca2	C	T	2: 25,441,296	S1267L	probably damaging	Het
Acsl3	A	T	1: 78,706,409	R719S	probably benign	Het
Adam1a	A	T	5: 121,519,776		probably null	Het
Adamts7	T	C	9: 90,188,798		probably benign	Het
Adgrf3	G	A	5: 30,202,229		probably benign	Het
Aldh6a1	T	C	12: 84,441,770	E89G	possibly damaging	Het
Ankrd36	A	G	11: 5,575,752	Y238C	probably damaging	Het
Ankrd65	G	A	4: 155,792,905	R291Q	probably benign	Het
Ano2	C	T	6: 125,796,264	R287W	probably damaging	Het
Ap1ar	A	G	3: 127,812,566	I125T	probably benign	Het
Arid1b	A	G	17: 5,242,922	D705G	probably damaging	Het
Asb18	T	A	1: 89,996,283	N86I	probably damaging	Het
Bicral	A	T	17: 46,824,593	S564T	probably benign	Het
Bpifa6	A	G	2: 153,989,272	M253V	probably benign	Het
Braf	T	C	6: 39,665,083	D194G	probably damaging	Het
Brinp3	C	A	1: 146,901,962	P716T	probably benign	Het
C7	T	A	15: 5,012,149	Y425F	probably damaging	Het
Ccdc102a	T	C	8: 94,906,086	K421R	probably benign	Het
Cep89	G	A	7: 35,420,963		probably null	Het
Chgb	A	T	2: 132,792,800	M221L	probably benign	Het
Chst14	A	G	2: 118,927,664	Y313C	probably damaging	Het
Ciita	G	A	16: 10,513,288		probably null	Het
Clec12b	A	T	6: 129,380,640	I85N	probably damaging	Het
Clec2e	G	T	6: 129,093,496	Y187*	probably null	Het
Crbn	T	C	6: 106,790,843	K229E	probably benign	Het
Ctdspl2	A	T	2: 121,981,281	Q201L	probably benign	Het
Ctrb1	G	T	8: 111,689,409		probably benign	Het
Cyp2c55	T	A	19: 39,011,081	V77E	probably damaging	Het
Cyp2c69	A	C	19: 39,849,395	D414E	probably damaging	Het
Ddx47	T	C	6: 135,011,740		probably benign	Het
Dlg1	A	G	16: 31,842,822		probably null	Het
Dnah5	C	A	15: 28,230,463	S169*	probably null	Het
Dock4	C	A	12: 40,755,810	T927K	probably benign	Het
Esrp2	T	G	8: 106,133,821	D259A	probably damaging	Het
Fam169a	A	G	13: 97,118,530	K418R	probably benign	Het
Fam207a	A	G	10: 77,497,526		probably benign	Het
Fancm	A	T	12: 65,099,293	I597F	probably damaging	Het
Fastkd2	G	T	1: 63,732,226		probably benign	Het
Fat1	G	A	8: 45,010,545	V1375M	probably damaging	Het
Fbxw10	A	T	11: 62,862,638	D486V	probably damaging	Het
Fech	C	T	18: 64,470,673		probably benign	Het
Fermt1	C	T	2: 132,925,022	E342K	probably benign	Het
Foxp1	T	A	6: 98,978,220	H195L	possibly damaging	Het
Gfra1	T	A	19: 58,451,975	I138L	probably benign	Het
Gm12185	T	C	11: 48,915,674	D230G	possibly damaging	Het
Gm14403	T	A	2: 177,507,231		probably benign	Het
Gpd2	A	C	2: 57,355,774	T439P	probably damaging	Het
Gpm6a	A	T	8: 55,037,350	K20N	probably damaging	Het
Hc	A	T	2: 34,983,807	Y158*	probably null	Het
Hectd4	A	T	5: 121,349,172	D3410V	possibly damaging	Het
Il17b	G	A	18: 61,690,412		probably null	Het
Irx4	G	T	13: 73,265,576	R55L	possibly damaging	Het
Itgav	A	T	2: 83,765,901		probably benign	Het
Lama3	T	C	18: 12,441,107	V582A	probably benign	Het
Lrp1b	C	T	2: 40,927,829		probably null	Het
Lrp5	T	C	19: 3,620,191	T638A	possibly damaging	Het
Lrrk1	A	C	7: 66,259,974	F1996C	probably damaging	Het
Ly6h	G	A	15: 75,566,137	S21L	probably benign	Het
Mctp1	T	C	13: 76,825,273	V431A	probably benign	Het
Metap2	C	T	10: 93,871,483		probably null	Het
Mfsd2b	T	A	12: 4,870,536	K94*	probably null	Het
Micall2	A	G	5: 139,719,342	L79P	probably damaging	Het
Mucl2	T	C	15: 103,897,407	T95A	possibly damaging	Het
Myo15	A	T	11: 60,506,006	T2634S	probably damaging	Het
Myo5b	G	T	18: 74,740,503	V1467L	probably damaging	Het
Nfic	G	T	10: 81,420,580	D105E	probably damaging	Het
Nrd1	T	A	4: 109,016,668	F227Y	probably benign	Het
Nrp2	A	T	1: 62,738,299	I88F	probably damaging	Het
Nup160	A	T	2: 90,700,543	H515L	probably benign	Het
Nup205	G	A	6: 35,225,982		probably null	Het
Oas1g	G	A	5: 120,882,006	T179I	probably benign	Het
Ogfr	A	T	2: 180,594,750	E376V	probably damaging	Het
Olfr1212	T	G	2: 88,959,043	Y192*	probably null	Het
Olfr1241	A	T	2: 89,482,511	V208D	possibly damaging	Het
Olfr166	T	G	16: 19,487,628	S263R	probably benign	Het
Olfr478	C	T	7: 108,032,388		probably null	Het
Olfr646	G	T	7: 104,106,689	V137F	possibly damaging	Het
Pard3b	T	C	1: 62,345,029	V851A	probably benign	Het
Pcdhb16	A	T	18: 37,478,089	Y34F	probably damaging	Het
Pikfyve	T	C	1: 65,251,666	Y1215H	probably damaging	Het
Pkhd1	A	T	1: 20,523,341	V1516E	probably damaging	Het
Pla2g4a	A	T	1: 149,887,593		probably benign	Het
Ptprg	A	T	14: 12,190,767	I818F	probably benign	Het
Ralgapb	A	G	2: 158,462,253	E644G	possibly damaging	Het
Rbm45	A	G	2: 76,372,115	I127M	probably damaging	Het
Rtp2	T	C	16: 23,927,470	Y157C	probably damaging	Het
Sema3f	A	T	9: 107,687,572		probably benign	Het
Sf3b3	A	T	8: 110,837,374	Y329N	probably damaging	Het
Sfxn1	A	G	13: 54,085,627		probably null	Het
Shkbp1	A	T	7: 27,345,326	C447S	probably damaging	Het
Sipa1l3	A	G	7: 29,322,260	S689P	possibly damaging	Het
Slc7a8	A	G	14: 54,733,199	S332P	probably damaging	Het
Slit1	C	A	19: 41,608,384	C1092F	probably damaging	Het
Stard9	A	G	2: 120,703,197	I619V	possibly damaging	Het
Sycp3	T	C	10: 88,469,592	V185A	possibly damaging	Het
Taar9	A	T	10: 24,109,484	N17K	possibly damaging	Het
Tbkbp1	T	C	11: 97,148,988	E102G	probably damaging	Het
Tex44	A	G	1: 86,427,112	N248D	probably benign	Het
Tmem63b	C	G	17: 45,678,978	R88P	possibly damaging	Het
Tnpo1	C	T	13: 98,850,157	V781I	probably benign	Het
Tonsl	C	T	15: 76,636,561		probably null	Het
Ttc6	A	G	12: 57,674,677	K984R	possibly damaging	Het
Usp34	A	G	11: 23,441,171	E2263G	probably damaging	Het
Usp8	A	G	2: 126,754,927	K875E	probably damaging	Het
Vapb	C	T	2: 173,762,112		probably benign	Het
Vmn1r223	A	G	13: 23,249,868	I211V	possibly damaging	Het
Vmn2r81	G	A	10: 79,293,662	V796I	probably damaging	Het
Wdr90	A	T	17: 25,854,053	V856D	probably damaging	Het
Wnk2	T	A	13: 49,082,095	T615S	probably damaging	Het

Other mutations in Ldhd

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00476:Ldhd	APN	8	111628638	missense	possibly damaging	0.61
IGL01372:Ldhd	APN	8	111628400	missense	probably benign
IGL02273:Ldhd	APN	8	111627290	missense	probably benign	0.37
IGL03111:Ldhd	APN	8	111627165	missense	probably damaging	1.00
R0511:Ldhd	UTSW	8	111629677	missense	probably benign	0.00
R0630:Ldhd	UTSW	8	111627302	missense	probably benign	0.00
R1468:Ldhd	UTSW	8	111627293	missense	possibly damaging	0.90
R1682:Ldhd	UTSW	8	111628113	missense	possibly damaging	0.69
R2023:Ldhd	UTSW	8	111629946	missense	probably damaging	0.96
R2128:Ldhd	UTSW	8	111627048	missense	probably benign	0.37
R2131:Ldhd	UTSW	8	111628537	unclassified	probably null
R2180:Ldhd	UTSW	8	111629386	missense	probably benign	0.05
R4593:Ldhd	UTSW	8	111629364	missense	probably damaging	1.00
R5153:Ldhd	UTSW	8	111627092	missense	probably benign	0.06
R5747:Ldhd	UTSW	8	111629071	missense	probably damaging	1.00
R5796:Ldhd	UTSW	8	111627090	missense	probably benign	0.03
R6856:Ldhd	UTSW	8	111630274	missense	probably benign	0.17

Predicted Primers

PCR Primer
(F):5'- AGTCCGATGCCATGTTCTCCAGTG -3'
(R):5'- GGCTTGACCACAGTGATCCCTTAAC -3'

Sequencing Primer
(F):5'- AGTGCATGTCCCACCGAG -3'
(R):5'- ACAGTGATCCCTTAACTTTGGGTAG -3'

Posted On

2014-05-23