Incidental Mutation 'R1470:Tnc'
ID |
197922 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Tnc
|
Ensembl Gene |
ENSMUSG00000028364 |
Gene Name |
tenascin C |
Synonyms |
cytotactin, C130033P17Rik, TN-C, hexabrachion, tenascin-C, Hxb, TN |
MMRRC Submission |
039523-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R1470 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
4 |
Chromosomal Location |
63878022-63965252 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 63884811 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Asparagine to Lysine
at position 1821
(N1821K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000103000
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000030056]
[ENSMUST00000107372]
[ENSMUST00000107377]
|
AlphaFold |
Q80YX1 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000030056
AA Change: N1821K
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
SMART Domains |
Protein: ENSMUSP00000030056 Gene: ENSMUSG00000028364 AA Change: N1821K
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
low complexity region
|
121 |
138 |
N/A |
INTRINSIC |
EGF
|
189 |
217 |
1.87e1 |
SMART |
EGF_like
|
220 |
248 |
3.5e1 |
SMART |
EGF
|
251 |
280 |
4.89e0 |
SMART |
EGF
|
283 |
311 |
3.23e0 |
SMART |
EGF_like
|
314 |
342 |
2.98e1 |
SMART |
EGF
|
345 |
373 |
1.87e1 |
SMART |
EGF
|
376 |
404 |
3.97e0 |
SMART |
EGF
|
407 |
435 |
8.52e0 |
SMART |
EGF
|
438 |
466 |
3.01e0 |
SMART |
EGF
|
469 |
497 |
3.46e0 |
SMART |
EGF
|
500 |
528 |
3.71e0 |
SMART |
EGF
|
531 |
559 |
4.32e-1 |
SMART |
EGF
|
562 |
590 |
1.84e1 |
SMART |
EGF
|
593 |
621 |
3.82e-2 |
SMART |
FN3
|
623 |
701 |
8.9e-8 |
SMART |
FN3
|
712 |
794 |
1.53e-6 |
SMART |
FN3
|
803 |
884 |
7.23e-8 |
SMART |
FN3
|
893 |
974 |
1.71e-9 |
SMART |
FN3
|
985 |
1062 |
2.56e-8 |
SMART |
FN3
|
1074 |
1152 |
8.58e-1 |
SMART |
FN3
|
1165 |
1245 |
2.72e-3 |
SMART |
FN3
|
1256 |
1334 |
5.36e-2 |
SMART |
FN3
|
1347 |
1427 |
4.93e0 |
SMART |
FN3
|
1438 |
1517 |
3.4e-4 |
SMART |
FN3
|
1528 |
1606 |
1.55e-7 |
SMART |
FN3
|
1617 |
1694 |
1.53e-6 |
SMART |
FN3
|
1705 |
1782 |
7.75e-8 |
SMART |
FBG
|
1797 |
2007 |
4.08e-124 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107372
AA Change: N1912K
PolyPhen 2
Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)
|
SMART Domains |
Protein: ENSMUSP00000102995 Gene: ENSMUSG00000028364 AA Change: N1912K
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
low complexity region
|
121 |
138 |
N/A |
INTRINSIC |
EGF
|
189 |
217 |
1.87e1 |
SMART |
EGF_like
|
220 |
248 |
3.5e1 |
SMART |
EGF
|
251 |
280 |
4.89e0 |
SMART |
EGF
|
283 |
311 |
3.23e0 |
SMART |
EGF_like
|
314 |
342 |
2.98e1 |
SMART |
EGF
|
345 |
373 |
1.87e1 |
SMART |
EGF
|
376 |
404 |
3.97e0 |
SMART |
EGF
|
407 |
435 |
8.52e0 |
SMART |
EGF
|
438 |
466 |
3.01e0 |
SMART |
EGF
|
469 |
497 |
3.46e0 |
SMART |
EGF
|
500 |
528 |
3.71e0 |
SMART |
EGF
|
531 |
559 |
4.32e-1 |
SMART |
EGF
|
562 |
590 |
1.84e1 |
SMART |
EGF
|
593 |
621 |
3.82e-2 |
SMART |
FN3
|
623 |
701 |
8.9e-8 |
SMART |
FN3
|
712 |
794 |
1.53e-6 |
SMART |
FN3
|
803 |
884 |
7.23e-8 |
SMART |
FN3
|
893 |
974 |
1.71e-9 |
SMART |
FN3
|
985 |
1062 |
2.56e-8 |
SMART |
FN3
|
1074 |
1152 |
8.58e-1 |
SMART |
FN3
|
1165 |
1245 |
2.72e-3 |
SMART |
FN3
|
1256 |
1334 |
5.36e-2 |
SMART |
FN3
|
1347 |
1427 |
4.93e0 |
SMART |
FN3
|
1438 |
1517 |
2.75e0 |
SMART |
FN3
|
1529 |
1608 |
3.4e-4 |
SMART |
FN3
|
1619 |
1697 |
1.55e-7 |
SMART |
FN3
|
1708 |
1785 |
1.53e-6 |
SMART |
FN3
|
1796 |
1873 |
7.75e-8 |
SMART |
FBG
|
1888 |
2098 |
4.08e-124 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000107377
AA Change: N1821K
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
SMART Domains |
Protein: ENSMUSP00000103000 Gene: ENSMUSG00000028364 AA Change: N1821K
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
low complexity region
|
121 |
138 |
N/A |
INTRINSIC |
EGF
|
189 |
217 |
1.87e1 |
SMART |
EGF_like
|
220 |
248 |
3.5e1 |
SMART |
EGF
|
251 |
280 |
4.89e0 |
SMART |
EGF
|
283 |
311 |
3.23e0 |
SMART |
EGF_like
|
314 |
342 |
2.98e1 |
SMART |
EGF
|
345 |
373 |
1.87e1 |
SMART |
EGF
|
376 |
404 |
3.97e0 |
SMART |
EGF
|
407 |
435 |
8.52e0 |
SMART |
EGF
|
438 |
466 |
3.01e0 |
SMART |
EGF
|
469 |
497 |
3.46e0 |
SMART |
EGF
|
500 |
528 |
3.71e0 |
SMART |
EGF
|
531 |
559 |
4.32e-1 |
SMART |
EGF
|
562 |
590 |
1.84e1 |
SMART |
EGF
|
593 |
621 |
3.82e-2 |
SMART |
FN3
|
623 |
701 |
8.9e-8 |
SMART |
FN3
|
712 |
794 |
1.53e-6 |
SMART |
FN3
|
803 |
884 |
7.23e-8 |
SMART |
FN3
|
893 |
974 |
1.71e-9 |
SMART |
FN3
|
985 |
1062 |
2.56e-8 |
SMART |
FN3
|
1074 |
1152 |
8.58e-1 |
SMART |
FN3
|
1165 |
1245 |
2.72e-3 |
SMART |
FN3
|
1256 |
1334 |
5.36e-2 |
SMART |
FN3
|
1347 |
1427 |
4.93e0 |
SMART |
FN3
|
1438 |
1517 |
3.4e-4 |
SMART |
FN3
|
1528 |
1606 |
1.55e-7 |
SMART |
FN3
|
1617 |
1694 |
1.53e-6 |
SMART |
FN3
|
1705 |
1782 |
7.75e-8 |
SMART |
FBG
|
1797 |
2007 |
4.08e-124 |
SMART |
|
Meta Mutation Damage Score |
0.2297 |
Coding Region Coverage |
- 1x: 97.5%
- 3x: 97.0%
- 10x: 95.5%
- 20x: 93.0%
|
Validation Efficiency |
97% (125/129) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an extracellular matrix protein with a spatially and temporally restricted tissue distribution. This protein is homohexameric with disulfide-linked subunits, and contains multiple EGF-like and fibronectin type-III domains. It is implicated in guidance of migrating neurons as well as axons during development, synaptic plasticity, and neuronal regeneration. [provided by RefSeq, Jul 2011] PHENOTYPE: Mice homozygous for several different targeted mutations show variable behavioral and nervous system phenotypes such as abnormal circadian rhythm, anxiety behavior, novelty-induced activity, swimming, impaired synaptic plasticity, long term potentiation and serotonin and dopamine neurotransmission. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 142 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aak1 |
T |
A |
6: 86,944,337 (GRCm39) |
S749T |
unknown |
Het |
Abcb4 |
A |
T |
5: 8,990,968 (GRCm39) |
I843F |
probably damaging |
Het |
Abcb6 |
A |
T |
1: 75,149,323 (GRCm39) |
|
probably benign |
Het |
AC238840.1 |
A |
T |
7: 38,467,377 (GRCm39) |
|
noncoding transcript |
Het |
Actr8 |
T |
A |
14: 29,708,926 (GRCm39) |
H244Q |
possibly damaging |
Het |
Acyp2 |
A |
G |
11: 30,456,452 (GRCm39) |
|
probably benign |
Het |
Adgrv1 |
A |
G |
13: 81,530,417 (GRCm39) |
Y5886H |
probably benign |
Het |
Afap1 |
C |
T |
5: 36,119,081 (GRCm39) |
|
probably benign |
Het |
Agk |
T |
A |
6: 40,363,751 (GRCm39) |
W244R |
probably damaging |
Het |
Akirin1 |
T |
A |
4: 123,631,883 (GRCm39) |
|
probably benign |
Het |
Ankrd11 |
C |
A |
8: 123,626,463 (GRCm39) |
V161L |
probably damaging |
Het |
Arap3 |
T |
C |
18: 38,122,249 (GRCm39) |
|
probably null |
Het |
Arhgap29 |
A |
G |
3: 121,785,968 (GRCm39) |
|
probably benign |
Het |
Armc3 |
A |
G |
2: 19,243,547 (GRCm39) |
M88V |
probably benign |
Het |
Atp13a5 |
G |
T |
16: 29,167,833 (GRCm39) |
P109T |
probably benign |
Het |
Avpr1b |
T |
A |
1: 131,528,323 (GRCm39) |
V282D |
probably damaging |
Het |
Baz2b |
T |
C |
2: 59,808,890 (GRCm39) |
K120E |
possibly damaging |
Het |
Bltp1 |
T |
C |
3: 37,052,480 (GRCm39) |
M3060T |
probably benign |
Het |
Cacna1a |
T |
A |
8: 85,241,579 (GRCm39) |
|
probably benign |
Het |
Cacng6 |
G |
A |
7: 3,473,404 (GRCm39) |
C76Y |
probably damaging |
Het |
Cactin |
G |
T |
10: 81,158,985 (GRCm39) |
E279* |
probably null |
Het |
Car9 |
A |
G |
4: 43,510,222 (GRCm39) |
Y268C |
probably damaging |
Het |
Ccdc146 |
T |
A |
5: 21,524,564 (GRCm39) |
I263F |
probably damaging |
Het |
Cdc16 |
A |
T |
8: 13,808,992 (GRCm39) |
|
probably benign |
Het |
Cdh16 |
T |
G |
8: 105,345,003 (GRCm39) |
S429R |
probably benign |
Het |
Cep250 |
A |
G |
2: 155,832,995 (GRCm39) |
E1639G |
probably damaging |
Het |
Ces1d |
A |
T |
8: 93,921,649 (GRCm39) |
V38D |
possibly damaging |
Het |
Chd1 |
A |
T |
17: 15,946,545 (GRCm39) |
Q97L |
possibly damaging |
Het |
Ciita |
G |
A |
16: 10,332,332 (GRCm39) |
D898N |
possibly damaging |
Het |
Clstn1 |
A |
G |
4: 149,719,179 (GRCm39) |
N336S |
possibly damaging |
Het |
Cntnap5a |
A |
G |
1: 116,187,249 (GRCm39) |
D607G |
probably damaging |
Het |
Col1a2 |
G |
A |
6: 4,518,822 (GRCm39) |
|
probably benign |
Het |
Col20a1 |
C |
T |
2: 180,636,753 (GRCm39) |
H245Y |
probably benign |
Het |
Coq8b |
A |
T |
7: 26,951,734 (GRCm39) |
T399S |
probably benign |
Het |
Cpn2 |
A |
G |
16: 30,079,003 (GRCm39) |
S233P |
probably benign |
Het |
Cryz |
G |
A |
3: 154,312,113 (GRCm39) |
G70D |
probably damaging |
Het |
Csmd1 |
G |
T |
8: 16,207,218 (GRCm39) |
|
probably benign |
Het |
Def6 |
T |
A |
17: 28,444,956 (GRCm39) |
D451E |
possibly damaging |
Het |
Dnah8 |
T |
A |
17: 30,966,251 (GRCm39) |
C2480* |
probably null |
Het |
Dnah9 |
T |
C |
11: 65,818,648 (GRCm39) |
N3230S |
probably benign |
Het |
Dyrk4 |
G |
T |
6: 126,893,337 (GRCm39) |
S15* |
probably null |
Het |
Erc1 |
T |
C |
6: 119,671,563 (GRCm39) |
R917G |
probably damaging |
Het |
Fgd2 |
T |
A |
17: 29,593,082 (GRCm39) |
|
probably benign |
Het |
Frem3 |
G |
T |
8: 81,337,820 (GRCm39) |
V38L |
probably benign |
Het |
Gas2l3 |
T |
C |
10: 89,249,796 (GRCm39) |
I441V |
probably benign |
Het |
Gm14393 |
T |
A |
2: 174,905,774 (GRCm39) |
Y6F |
probably damaging |
Het |
Gm1527 |
A |
G |
3: 28,969,417 (GRCm39) |
K256E |
possibly damaging |
Het |
Gm21905 |
G |
T |
5: 68,103,740 (GRCm39) |
|
probably benign |
Het |
Gtf2ird1 |
T |
A |
5: 134,424,656 (GRCm39) |
|
probably null |
Het |
Hmces |
C |
A |
6: 87,913,121 (GRCm39) |
T292K |
probably benign |
Het |
Hpse2 |
G |
A |
19: 43,376,692 (GRCm39) |
S20L |
probably benign |
Het |
Ift70b |
G |
T |
2: 75,768,155 (GRCm39) |
S199R |
probably benign |
Het |
Ikbke |
A |
T |
1: 131,204,224 (GRCm39) |
V23E |
probably null |
Het |
Ino80 |
A |
T |
2: 119,210,130 (GRCm39) |
V1387E |
probably damaging |
Het |
Islr |
G |
T |
9: 58,064,589 (GRCm39) |
A306D |
probably damaging |
Het |
Jakmip1 |
G |
A |
5: 37,258,182 (GRCm39) |
G276D |
probably damaging |
Het |
Jchain |
A |
G |
5: 88,673,979 (GRCm39) |
V55A |
probably benign |
Het |
Kalrn |
T |
C |
16: 34,007,841 (GRCm39) |
K1350E |
probably damaging |
Het |
Kansl1l |
T |
C |
1: 66,841,156 (GRCm39) |
Q48R |
possibly damaging |
Het |
Kmt5a |
T |
C |
5: 124,585,334 (GRCm39) |
L23P |
probably damaging |
Het |
Lrba |
C |
T |
3: 86,644,449 (GRCm39) |
H381Y |
probably damaging |
Het |
Lrch3 |
T |
C |
16: 32,808,865 (GRCm39) |
|
probably benign |
Het |
Lrrc32 |
T |
C |
7: 98,148,564 (GRCm39) |
V448A |
probably benign |
Het |
Mapkbp1 |
T |
C |
2: 119,848,301 (GRCm39) |
M617T |
probably damaging |
Het |
Megf6 |
C |
T |
4: 154,336,876 (GRCm39) |
|
probably benign |
Het |
Mfap1a |
T |
C |
2: 121,333,282 (GRCm39) |
M50V |
probably benign |
Het |
Mgam |
G |
T |
6: 40,736,062 (GRCm39) |
A854S |
probably damaging |
Het |
Myh3 |
A |
C |
11: 66,988,885 (GRCm39) |
|
probably benign |
Het |
Myo18b |
C |
A |
5: 112,840,899 (GRCm39) |
R2298L |
probably damaging |
Het |
Myo1h |
T |
A |
5: 114,457,765 (GRCm39) |
M92K |
probably damaging |
Het |
Nfkbib |
T |
C |
7: 28,461,447 (GRCm39) |
|
probably null |
Het |
Nlrp2 |
T |
A |
7: 5,303,950 (GRCm39) |
T192S |
probably benign |
Het |
Nr2f1 |
A |
T |
13: 78,346,284 (GRCm39) |
Y137N |
possibly damaging |
Het |
Nup98 |
T |
A |
7: 101,796,513 (GRCm39) |
D841V |
probably damaging |
Het |
Nvl |
A |
G |
1: 180,966,827 (GRCm39) |
V59A |
probably damaging |
Het |
Ogdhl |
C |
A |
14: 32,068,745 (GRCm39) |
N948K |
probably damaging |
Het |
Or11g27 |
T |
C |
14: 50,771,159 (GRCm39) |
S97P |
possibly damaging |
Het |
Or12j3 |
A |
G |
7: 139,953,026 (GRCm39) |
S166P |
probably benign |
Het |
Or13a24 |
A |
G |
7: 140,154,662 (GRCm39) |
T199A |
probably benign |
Het |
Or51g1 |
A |
C |
7: 102,633,530 (GRCm39) |
Y280* |
probably null |
Het |
Orc2 |
A |
C |
1: 58,520,317 (GRCm39) |
|
probably benign |
Het |
Osgin1 |
G |
A |
8: 120,171,704 (GRCm39) |
R166H |
probably damaging |
Het |
Palb2 |
A |
T |
7: 121,706,746 (GRCm39) |
F741I |
probably benign |
Het |
Palb2 |
G |
T |
7: 121,706,747 (GRCm39) |
Y740* |
probably null |
Het |
Parvb |
G |
A |
15: 84,155,453 (GRCm39) |
G46D |
probably damaging |
Het |
Parvb |
G |
A |
15: 84,155,509 (GRCm39) |
D65N |
probably benign |
Het |
Pcsk2 |
A |
T |
2: 143,388,438 (GRCm39) |
K10* |
probably null |
Het |
Pde3a |
C |
T |
6: 141,411,932 (GRCm39) |
A502V |
probably benign |
Het |
Pfas |
T |
C |
11: 68,882,185 (GRCm39) |
I893V |
probably benign |
Het |
Pla2g4a |
A |
T |
1: 149,716,471 (GRCm39) |
D663E |
probably damaging |
Het |
Prickle2 |
G |
A |
6: 92,435,583 (GRCm39) |
P6L |
probably damaging |
Het |
Prx |
T |
A |
7: 27,217,026 (GRCm39) |
M648K |
probably benign |
Het |
Ptpn21 |
T |
C |
12: 98,654,735 (GRCm39) |
N744S |
probably benign |
Het |
Ptprq |
C |
T |
10: 107,554,435 (GRCm39) |
V97M |
probably damaging |
Het |
Pvr |
T |
C |
7: 19,652,549 (GRCm39) |
E122G |
possibly damaging |
Het |
Racgap1 |
T |
C |
15: 99,537,656 (GRCm39) |
K15E |
probably damaging |
Het |
Rock1 |
C |
T |
18: 10,136,091 (GRCm39) |
|
probably null |
Het |
Rorc |
T |
A |
3: 94,304,609 (GRCm39) |
Y331* |
probably null |
Het |
Rpl37 |
T |
C |
15: 5,148,096 (GRCm39) |
V91A |
probably benign |
Het |
Rrp36 |
T |
A |
17: 46,983,306 (GRCm39) |
K103* |
probably null |
Het |
Ryr3 |
T |
A |
2: 112,483,352 (GRCm39) |
M4142L |
probably benign |
Het |
Sash1 |
A |
T |
10: 8,665,357 (GRCm39) |
L125H |
probably damaging |
Het |
Scn5a |
T |
C |
9: 119,365,541 (GRCm39) |
M369V |
possibly damaging |
Het |
Siglec1 |
A |
T |
2: 130,912,307 (GRCm39) |
N1678K |
probably benign |
Het |
Slc15a5 |
A |
T |
6: 138,049,992 (GRCm39) |
V141E |
probably benign |
Het |
Slc43a1 |
T |
C |
2: 84,690,020 (GRCm39) |
|
probably benign |
Het |
Slc8a3 |
A |
T |
12: 81,246,484 (GRCm39) |
H856Q |
probably benign |
Het |
Spmip11 |
T |
C |
15: 98,483,142 (GRCm39) |
|
probably benign |
Het |
Sptlc2 |
T |
A |
12: 87,402,414 (GRCm39) |
M171L |
probably benign |
Het |
Srcap |
T |
A |
7: 127,158,899 (GRCm39) |
|
probably benign |
Het |
St6gal2 |
A |
G |
17: 55,797,944 (GRCm39) |
D310G |
probably damaging |
Het |
Susd2 |
T |
A |
10: 75,473,888 (GRCm39) |
D689V |
probably damaging |
Het |
Suz12 |
A |
T |
11: 79,910,558 (GRCm39) |
E303V |
possibly damaging |
Het |
Taldo1 |
C |
A |
7: 140,978,500 (GRCm39) |
T150K |
probably damaging |
Het |
Tex14 |
T |
C |
11: 87,440,355 (GRCm39) |
|
probably benign |
Het |
Tg |
T |
A |
15: 66,721,312 (GRCm39) |
F274I |
possibly damaging |
Het |
Tmem151b |
T |
C |
17: 45,856,663 (GRCm39) |
D259G |
probably damaging |
Het |
Tmem179 |
G |
T |
12: 112,468,288 (GRCm39) |
H64Q |
probably benign |
Het |
Tmem236 |
A |
G |
2: 14,223,732 (GRCm39) |
T174A |
probably benign |
Het |
Tmtc1 |
T |
A |
6: 148,207,483 (GRCm39) |
|
probably benign |
Het |
Tnfrsf11a |
A |
G |
1: 105,752,773 (GRCm39) |
N261S |
probably damaging |
Het |
Traf6 |
G |
T |
2: 101,526,994 (GRCm39) |
|
probably benign |
Het |
Trank1 |
C |
A |
9: 111,172,300 (GRCm39) |
F96L |
possibly damaging |
Het |
Trim56 |
T |
A |
5: 137,142,017 (GRCm39) |
I500F |
probably damaging |
Het |
Ttll5 |
A |
G |
12: 85,926,168 (GRCm39) |
I321V |
possibly damaging |
Het |
Ttn |
C |
A |
2: 76,608,367 (GRCm39) |
W17852L |
probably damaging |
Het |
Twnk |
G |
A |
19: 44,997,820 (GRCm39) |
V450M |
probably damaging |
Het |
Uba52 |
A |
G |
8: 70,962,206 (GRCm39) |
I127T |
possibly damaging |
Het |
Ubr4 |
T |
A |
4: 139,148,537 (GRCm39) |
|
probably null |
Het |
Uggt1 |
A |
T |
1: 36,215,877 (GRCm39) |
M130K |
probably benign |
Het |
Ulk4 |
T |
A |
9: 120,910,722 (GRCm39) |
T1101S |
probably benign |
Het |
Urb1 |
A |
G |
16: 90,548,902 (GRCm39) |
S2269P |
probably benign |
Het |
Ush2a |
G |
T |
1: 188,132,403 (GRCm39) |
R875L |
probably benign |
Het |
Usp9y |
T |
A |
Y: 1,332,471 (GRCm39) |
H1624L |
probably benign |
Homo |
Vipr1 |
T |
C |
9: 121,494,586 (GRCm39) |
L308S |
possibly damaging |
Het |
Vps50 |
G |
A |
6: 3,517,777 (GRCm39) |
|
probably benign |
Het |
Xdh |
T |
G |
17: 74,198,107 (GRCm39) |
K1260T |
probably damaging |
Het |
Yipf4 |
A |
G |
17: 74,800,963 (GRCm39) |
I94V |
probably benign |
Het |
Zfhx4 |
A |
G |
3: 5,478,206 (GRCm39) |
*3582W |
probably null |
Het |
Zfp58 |
T |
C |
13: 67,640,144 (GRCm39) |
N116D |
possibly damaging |
Het |
Zfp750 |
C |
A |
11: 121,402,819 (GRCm39) |
R643L |
probably benign |
Het |
Znfx1 |
A |
G |
2: 166,884,507 (GRCm39) |
V51A |
possibly damaging |
Het |
|
Other mutations in Tnc |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00229:Tnc
|
APN |
4 |
63,935,061 (GRCm39) |
splice site |
probably benign |
|
IGL00531:Tnc
|
APN |
4 |
63,889,390 (GRCm39) |
splice site |
probably benign |
|
IGL00674:Tnc
|
APN |
4 |
63,883,844 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01015:Tnc
|
APN |
4 |
63,935,571 (GRCm39) |
missense |
probably benign |
0.19 |
IGL01090:Tnc
|
APN |
4 |
63,918,317 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01310:Tnc
|
APN |
4 |
63,931,314 (GRCm39) |
missense |
probably benign |
0.03 |
IGL01331:Tnc
|
APN |
4 |
63,901,112 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL01393:Tnc
|
APN |
4 |
63,932,291 (GRCm39) |
splice site |
probably benign |
|
IGL01411:Tnc
|
APN |
4 |
63,918,959 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL01472:Tnc
|
APN |
4 |
63,924,656 (GRCm39) |
missense |
probably benign |
0.00 |
IGL01552:Tnc
|
APN |
4 |
63,888,645 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01661:Tnc
|
APN |
4 |
63,888,544 (GRCm39) |
splice site |
probably benign |
|
IGL01669:Tnc
|
APN |
4 |
63,918,938 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01912:Tnc
|
APN |
4 |
63,926,977 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02028:Tnc
|
APN |
4 |
63,884,909 (GRCm39) |
splice site |
probably benign |
|
IGL02100:Tnc
|
APN |
4 |
63,918,398 (GRCm39) |
missense |
possibly damaging |
0.84 |
IGL02549:Tnc
|
APN |
4 |
63,933,309 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02642:Tnc
|
APN |
4 |
63,883,816 (GRCm39) |
splice site |
probably benign |
|
IGL02712:Tnc
|
APN |
4 |
63,893,493 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02876:Tnc
|
APN |
4 |
63,933,338 (GRCm39) |
missense |
possibly damaging |
0.56 |
IGL02886:Tnc
|
APN |
4 |
63,918,344 (GRCm39) |
missense |
probably damaging |
0.96 |
IGL02972:Tnc
|
APN |
4 |
63,894,715 (GRCm39) |
missense |
probably benign |
0.11 |
IGL03073:Tnc
|
APN |
4 |
63,889,461 (GRCm39) |
missense |
possibly damaging |
0.58 |
IGL03116:Tnc
|
APN |
4 |
63,932,270 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03181:Tnc
|
APN |
4 |
63,885,543 (GRCm39) |
missense |
possibly damaging |
0.95 |
IGL03358:Tnc
|
APN |
4 |
63,935,852 (GRCm39) |
nonsense |
probably null |
|
tancredo
|
UTSW |
4 |
63,911,534 (GRCm39) |
nonsense |
probably null |
|
BB009:Tnc
|
UTSW |
4 |
63,926,857 (GRCm39) |
missense |
probably benign |
|
BB019:Tnc
|
UTSW |
4 |
63,926,857 (GRCm39) |
missense |
probably benign |
|
P0020:Tnc
|
UTSW |
4 |
63,927,094 (GRCm39) |
missense |
possibly damaging |
0.63 |
PIT4377001:Tnc
|
UTSW |
4 |
63,935,973 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4403001:Tnc
|
UTSW |
4 |
63,882,904 (GRCm39) |
missense |
probably damaging |
1.00 |
PIT4468001:Tnc
|
UTSW |
4 |
63,882,904 (GRCm39) |
missense |
probably damaging |
1.00 |
R0243:Tnc
|
UTSW |
4 |
63,888,657 (GRCm39) |
missense |
probably damaging |
0.98 |
R0362:Tnc
|
UTSW |
4 |
63,935,679 (GRCm39) |
missense |
probably damaging |
1.00 |
R0410:Tnc
|
UTSW |
4 |
63,925,931 (GRCm39) |
missense |
probably benign |
0.00 |
R0420:Tnc
|
UTSW |
4 |
63,918,396 (GRCm39) |
missense |
probably benign |
0.00 |
R0540:Tnc
|
UTSW |
4 |
63,938,692 (GRCm39) |
missense |
probably damaging |
1.00 |
R0650:Tnc
|
UTSW |
4 |
63,926,971 (GRCm39) |
missense |
probably benign |
0.00 |
R1019:Tnc
|
UTSW |
4 |
63,880,319 (GRCm39) |
missense |
probably damaging |
1.00 |
R1102:Tnc
|
UTSW |
4 |
63,938,705 (GRCm39) |
missense |
probably benign |
0.05 |
R1126:Tnc
|
UTSW |
4 |
63,936,357 (GRCm39) |
missense |
probably damaging |
0.99 |
R1141:Tnc
|
UTSW |
4 |
63,932,231 (GRCm39) |
missense |
probably damaging |
1.00 |
R1142:Tnc
|
UTSW |
4 |
63,932,231 (GRCm39) |
missense |
probably damaging |
1.00 |
R1307:Tnc
|
UTSW |
4 |
63,927,096 (GRCm39) |
missense |
probably damaging |
0.98 |
R1322:Tnc
|
UTSW |
4 |
63,932,231 (GRCm39) |
missense |
probably damaging |
1.00 |
R1414:Tnc
|
UTSW |
4 |
63,883,932 (GRCm39) |
splice site |
probably benign |
|
R1470:Tnc
|
UTSW |
4 |
63,884,811 (GRCm39) |
missense |
probably damaging |
1.00 |
R1499:Tnc
|
UTSW |
4 |
63,882,991 (GRCm39) |
missense |
probably benign |
0.15 |
R1506:Tnc
|
UTSW |
4 |
63,925,921 (GRCm39) |
missense |
possibly damaging |
0.90 |
R1597:Tnc
|
UTSW |
4 |
63,924,621 (GRCm39) |
missense |
probably benign |
|
R1750:Tnc
|
UTSW |
4 |
63,890,972 (GRCm39) |
missense |
probably damaging |
1.00 |
R1765:Tnc
|
UTSW |
4 |
63,932,231 (GRCm39) |
missense |
probably damaging |
1.00 |
R1783:Tnc
|
UTSW |
4 |
63,936,333 (GRCm39) |
missense |
probably damaging |
0.98 |
R1808:Tnc
|
UTSW |
4 |
63,918,168 (GRCm39) |
missense |
probably damaging |
1.00 |
R1903:Tnc
|
UTSW |
4 |
63,918,299 (GRCm39) |
missense |
probably benign |
0.00 |
R1932:Tnc
|
UTSW |
4 |
63,911,262 (GRCm39) |
critical splice donor site |
probably null |
|
R1941:Tnc
|
UTSW |
4 |
63,933,201 (GRCm39) |
missense |
probably damaging |
1.00 |
R1983:Tnc
|
UTSW |
4 |
63,902,867 (GRCm39) |
missense |
possibly damaging |
0.95 |
R2024:Tnc
|
UTSW |
4 |
63,882,858 (GRCm39) |
missense |
probably damaging |
1.00 |
R2075:Tnc
|
UTSW |
4 |
63,913,903 (GRCm39) |
missense |
possibly damaging |
0.94 |
R2327:Tnc
|
UTSW |
4 |
63,893,475 (GRCm39) |
missense |
possibly damaging |
0.78 |
R2444:Tnc
|
UTSW |
4 |
63,933,200 (GRCm39) |
missense |
probably damaging |
1.00 |
R2982:Tnc
|
UTSW |
4 |
63,938,756 (GRCm39) |
missense |
possibly damaging |
0.81 |
R3874:Tnc
|
UTSW |
4 |
63,926,947 (GRCm39) |
missense |
probably damaging |
1.00 |
R4110:Tnc
|
UTSW |
4 |
63,933,188 (GRCm39) |
missense |
probably damaging |
1.00 |
R4360:Tnc
|
UTSW |
4 |
63,935,161 (GRCm39) |
missense |
probably benign |
0.35 |
R4371:Tnc
|
UTSW |
4 |
63,888,588 (GRCm39) |
missense |
probably damaging |
1.00 |
R4434:Tnc
|
UTSW |
4 |
63,926,066 (GRCm39) |
missense |
possibly damaging |
0.91 |
R4438:Tnc
|
UTSW |
4 |
63,926,066 (GRCm39) |
missense |
possibly damaging |
0.91 |
R4570:Tnc
|
UTSW |
4 |
63,913,909 (GRCm39) |
missense |
probably damaging |
0.99 |
R4595:Tnc
|
UTSW |
4 |
63,913,982 (GRCm39) |
missense |
probably damaging |
1.00 |
R4749:Tnc
|
UTSW |
4 |
63,913,876 (GRCm39) |
missense |
possibly damaging |
0.56 |
R4756:Tnc
|
UTSW |
4 |
63,885,580 (GRCm39) |
missense |
probably damaging |
0.99 |
R4824:Tnc
|
UTSW |
4 |
63,935,857 (GRCm39) |
nonsense |
probably null |
|
R4957:Tnc
|
UTSW |
4 |
63,894,793 (GRCm39) |
missense |
probably damaging |
1.00 |
R4977:Tnc
|
UTSW |
4 |
63,924,485 (GRCm39) |
missense |
possibly damaging |
0.82 |
R5001:Tnc
|
UTSW |
4 |
63,918,299 (GRCm39) |
missense |
probably benign |
0.16 |
R5001:Tnc
|
UTSW |
4 |
63,902,726 (GRCm39) |
missense |
probably damaging |
1.00 |
R5015:Tnc
|
UTSW |
4 |
63,924,739 (GRCm39) |
missense |
probably damaging |
1.00 |
R5049:Tnc
|
UTSW |
4 |
63,936,223 (GRCm39) |
missense |
probably damaging |
1.00 |
R5066:Tnc
|
UTSW |
4 |
63,893,466 (GRCm39) |
missense |
probably damaging |
0.96 |
R5073:Tnc
|
UTSW |
4 |
63,938,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R5116:Tnc
|
UTSW |
4 |
63,885,452 (GRCm39) |
critical splice donor site |
probably null |
|
R5195:Tnc
|
UTSW |
4 |
63,885,489 (GRCm39) |
missense |
probably damaging |
1.00 |
R5200:Tnc
|
UTSW |
4 |
63,889,515 (GRCm39) |
missense |
probably damaging |
1.00 |
R5221:Tnc
|
UTSW |
4 |
63,911,534 (GRCm39) |
nonsense |
probably null |
|
R5237:Tnc
|
UTSW |
4 |
63,880,333 (GRCm39) |
missense |
probably damaging |
1.00 |
R5265:Tnc
|
UTSW |
4 |
63,911,443 (GRCm39) |
missense |
probably benign |
0.00 |
R5275:Tnc
|
UTSW |
4 |
63,882,967 (GRCm39) |
nonsense |
probably null |
|
R5346:Tnc
|
UTSW |
4 |
63,926,892 (GRCm39) |
missense |
probably benign |
|
R5409:Tnc
|
UTSW |
4 |
63,925,654 (GRCm39) |
missense |
probably damaging |
1.00 |
R5409:Tnc
|
UTSW |
4 |
63,884,773 (GRCm39) |
missense |
probably damaging |
1.00 |
R5469:Tnc
|
UTSW |
4 |
63,932,162 (GRCm39) |
splice site |
probably null |
|
R5518:Tnc
|
UTSW |
4 |
63,935,916 (GRCm39) |
missense |
probably damaging |
1.00 |
R5560:Tnc
|
UTSW |
4 |
63,926,946 (GRCm39) |
missense |
probably damaging |
1.00 |
R5588:Tnc
|
UTSW |
4 |
63,924,659 (GRCm39) |
missense |
possibly damaging |
0.57 |
R5686:Tnc
|
UTSW |
4 |
63,925,967 (GRCm39) |
splice site |
probably null |
|
R5686:Tnc
|
UTSW |
4 |
63,927,032 (GRCm39) |
missense |
possibly damaging |
0.78 |
R5837:Tnc
|
UTSW |
4 |
63,931,451 (GRCm39) |
missense |
probably damaging |
1.00 |
R5976:Tnc
|
UTSW |
4 |
63,936,403 (GRCm39) |
missense |
probably benign |
0.17 |
R6156:Tnc
|
UTSW |
4 |
63,888,589 (GRCm39) |
missense |
probably damaging |
1.00 |
R6182:Tnc
|
UTSW |
4 |
63,927,033 (GRCm39) |
missense |
probably damaging |
0.99 |
R6360:Tnc
|
UTSW |
4 |
63,918,970 (GRCm39) |
missense |
probably damaging |
1.00 |
R6416:Tnc
|
UTSW |
4 |
63,926,053 (GRCm39) |
missense |
probably benign |
0.05 |
R6778:Tnc
|
UTSW |
4 |
63,913,835 (GRCm39) |
missense |
probably benign |
0.12 |
R6798:Tnc
|
UTSW |
4 |
63,883,841 (GRCm39) |
missense |
probably benign |
0.02 |
R6799:Tnc
|
UTSW |
4 |
63,883,841 (GRCm39) |
missense |
probably benign |
0.02 |
R6943:Tnc
|
UTSW |
4 |
63,900,982 (GRCm39) |
missense |
probably damaging |
0.97 |
R7027:Tnc
|
UTSW |
4 |
63,902,826 (GRCm39) |
missense |
probably benign |
0.02 |
R7183:Tnc
|
UTSW |
4 |
63,931,365 (GRCm39) |
missense |
probably damaging |
1.00 |
R7204:Tnc
|
UTSW |
4 |
63,889,392 (GRCm39) |
splice site |
probably null |
|
R7317:Tnc
|
UTSW |
4 |
63,890,959 (GRCm39) |
missense |
probably damaging |
0.99 |
R7323:Tnc
|
UTSW |
4 |
63,889,469 (GRCm39) |
missense |
probably damaging |
0.96 |
R7327:Tnc
|
UTSW |
4 |
63,882,999 (GRCm39) |
splice site |
probably null |
|
R7382:Tnc
|
UTSW |
4 |
63,932,280 (GRCm39) |
nonsense |
probably null |
|
R7399:Tnc
|
UTSW |
4 |
63,938,894 (GRCm39) |
start gained |
probably benign |
|
R7479:Tnc
|
UTSW |
4 |
63,935,865 (GRCm39) |
missense |
possibly damaging |
0.95 |
R7585:Tnc
|
UTSW |
4 |
63,938,648 (GRCm39) |
missense |
probably damaging |
1.00 |
R7932:Tnc
|
UTSW |
4 |
63,926,857 (GRCm39) |
missense |
probably benign |
|
R7947:Tnc
|
UTSW |
4 |
63,935,580 (GRCm39) |
missense |
probably damaging |
1.00 |
R7974:Tnc
|
UTSW |
4 |
63,918,961 (GRCm39) |
missense |
possibly damaging |
0.84 |
R7991:Tnc
|
UTSW |
4 |
63,926,983 (GRCm39) |
missense |
probably benign |
0.42 |
R8004:Tnc
|
UTSW |
4 |
63,902,894 (GRCm39) |
missense |
probably benign |
0.04 |
R8080:Tnc
|
UTSW |
4 |
63,894,706 (GRCm39) |
missense |
possibly damaging |
0.52 |
R8109:Tnc
|
UTSW |
4 |
63,927,000 (GRCm39) |
missense |
probably benign |
0.11 |
R8145:Tnc
|
UTSW |
4 |
63,935,716 (GRCm39) |
missense |
probably benign |
|
R8340:Tnc
|
UTSW |
4 |
63,926,036 (GRCm39) |
missense |
probably damaging |
1.00 |
R8360:Tnc
|
UTSW |
4 |
63,885,511 (GRCm39) |
missense |
probably benign |
0.00 |
R8671:Tnc
|
UTSW |
4 |
63,935,683 (GRCm39) |
missense |
probably damaging |
1.00 |
R8691:Tnc
|
UTSW |
4 |
63,880,313 (GRCm39) |
missense |
probably damaging |
1.00 |
R8759:Tnc
|
UTSW |
4 |
63,924,501 (GRCm39) |
missense |
possibly damaging |
0.86 |
R8864:Tnc
|
UTSW |
4 |
63,911,296 (GRCm39) |
missense |
probably damaging |
0.98 |
R8927:Tnc
|
UTSW |
4 |
63,925,595 (GRCm39) |
missense |
probably damaging |
1.00 |
R8928:Tnc
|
UTSW |
4 |
63,925,595 (GRCm39) |
missense |
probably damaging |
1.00 |
R8949:Tnc
|
UTSW |
4 |
63,927,087 (GRCm39) |
missense |
probably damaging |
1.00 |
R8956:Tnc
|
UTSW |
4 |
63,918,970 (GRCm39) |
missense |
probably damaging |
1.00 |
R9016:Tnc
|
UTSW |
4 |
63,935,331 (GRCm39) |
missense |
probably benign |
0.23 |
R9049:Tnc
|
UTSW |
4 |
63,918,247 (GRCm39) |
missense |
possibly damaging |
0.83 |
R9097:Tnc
|
UTSW |
4 |
63,888,622 (GRCm39) |
missense |
possibly damaging |
0.62 |
R9114:Tnc
|
UTSW |
4 |
63,890,973 (GRCm39) |
missense |
probably benign |
0.03 |
R9151:Tnc
|
UTSW |
4 |
63,938,686 (GRCm39) |
missense |
possibly damaging |
0.46 |
R9488:Tnc
|
UTSW |
4 |
63,913,942 (GRCm39) |
missense |
probably damaging |
0.99 |
R9537:Tnc
|
UTSW |
4 |
63,884,821 (GRCm39) |
missense |
probably damaging |
0.99 |
R9666:Tnc
|
UTSW |
4 |
63,926,045 (GRCm39) |
missense |
probably damaging |
1.00 |
R9700:Tnc
|
UTSW |
4 |
63,933,186 (GRCm39) |
missense |
probably damaging |
0.99 |
R9703:Tnc
|
UTSW |
4 |
63,889,412 (GRCm39) |
missense |
probably benign |
0.00 |
R9771:Tnc
|
UTSW |
4 |
63,925,600 (GRCm39) |
missense |
probably damaging |
1.00 |
S24628:Tnc
|
UTSW |
4 |
63,936,249 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1177:Tnc
|
UTSW |
4 |
63,925,663 (GRCm39) |
nonsense |
probably null |
|
Z1177:Tnc
|
UTSW |
4 |
63,878,781 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Predicted Primers |
PCR Primer
(F):5'- TGATTGTCACTGCCATTCATAGCAGAG -3'
(R):5'- GCCTGCTTGTAGGAACCTAGTCAC -3'
Sequencing Primer
(F):5'- ccttctgcctctaccttctg -3'
(R):5'- CTTGTAGGAACCTAGTCACTGCATAG -3'
|
Posted On |
2014-05-23 |