Mutagenetix > Incidental Mutation

Incidental Mutation 'R0086:Cyp2c39'

19920

Institutional Source

Beutler Lab

Gene Symbol

Cyp2c39

Ensembl Gene

ENSMUSG00000025003

Gene Name

cytochrome P450, family 2, subfamily c, polypeptide 39

Synonyms

MMRRC Submission

038373-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.085) question?

Stock #

R0086 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

39499306-39556973 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 39499357 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 15 (I15F)

Ref Sequence

ENSEMBL: ENSMUSP00000025968 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025968]

AlphaFold

P56656

Predicted Effect

unknown
Transcript: ENSMUST00000025968
AA Change: I15F

SMART Domains

Protein: ENSMUSP00000025968
Gene: ENSMUSG00000025003
AA Change: I15F

Domain	Start	End	E-Value	Type
low complexity region	3	19	N/A	INTRINSIC
Pfam:p450	30	487	1.1e-163	PFAM

Meta Mutation Damage Score

0.0869

Coding Region Coverage

1x: 99.2%
3x: 98.0%
10x: 94.6%
20x: 86.6%

Validation Efficiency

96% (91/95)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930407I10Rik	T	A	15: 81,946,802 (GRCm39)	V233D	probably benign	Het
Abcg8	T	C	17: 85,000,199 (GRCm39)	V252A	probably damaging	Het
Adam39	C	T	8: 41,279,397 (GRCm39)	T596I	possibly damaging	Het
Agap2	C	A	10: 126,923,751 (GRCm39)		probably null	Het
Ap4b1	T	G	3: 103,722,176 (GRCm39)	V50G	probably damaging	Het
Atp13a1	T	A	8: 70,250,424 (GRCm39)	I381N	possibly damaging	Het
Bcl2	G	A	1: 106,640,292 (GRCm39)	R107C	probably damaging	Het
Birc6	T	C	17: 74,900,161 (GRCm39)	V1113A	possibly damaging	Het
C1galt1	T	A	6: 7,867,051 (GRCm39)		probably benign	Het
Capza2	A	G	6: 17,660,773 (GRCm39)	K158E	probably damaging	Het
Cenpe	C	T	3: 134,970,185 (GRCm39)		probably benign	Het
Cercam	T	C	2: 29,761,076 (GRCm39)	L42P	probably damaging	Het
Cfap54	T	C	10: 92,864,456 (GRCm39)	E807G	possibly damaging	Het
Cog6	A	G	3: 52,900,991 (GRCm39)	V157A	probably damaging	Het
Cts6	A	T	13: 61,344,271 (GRCm39)		probably benign	Het
Dock7	A	T	4: 98,833,381 (GRCm39)	V1970D	probably damaging	Het
Exph5	A	G	9: 53,249,230 (GRCm39)	D73G	possibly damaging	Het
Gjc2	A	T	11: 59,067,672 (GRCm39)	M270K	probably benign	Het
Gns	G	A	10: 121,227,378 (GRCm39)	D463N	probably damaging	Het
Hoxd8	G	T	2: 74,536,276 (GRCm39)	G129W	probably damaging	Het
Ina	A	G	19: 47,012,030 (GRCm39)	T483A	possibly damaging	Het
Lmod3	T	A	6: 97,224,306 (GRCm39)	Q505L	probably damaging	Het
Map3k13	A	G	16: 21,732,975 (GRCm39)	N526D	probably damaging	Het
Map3k2	A	T	18: 32,351,521 (GRCm39)	I435F	probably damaging	Het
Mfsd6l	A	G	11: 68,447,391 (GRCm39)	T81A	probably benign	Het
Micall1	T	C	15: 79,009,689 (GRCm39)		probably benign	Het
Mkrn2	G	T	6: 115,590,296 (GRCm39)	M217I	possibly damaging	Het
Mtrex	G	T	13: 113,063,862 (GRCm39)	F10L	probably benign	Het
Myh11	C	A	16: 14,041,883 (GRCm39)	Q720H	probably damaging	Het
Ncapg	A	G	5: 45,834,086 (GRCm39)		probably null	Het
Nlrp9a	G	A	7: 26,257,972 (GRCm39)	C530Y	probably damaging	Het
Numb	T	C	12: 83,842,704 (GRCm39)	T442A	probably damaging	Het
Oip5	C	T	2: 119,448,410 (GRCm39)		probably benign	Het
Or1j14	A	T	2: 36,417,462 (GRCm39)	I13F	possibly damaging	Het
Or4c119	C	T	2: 88,986,820 (GRCm39)	R233H	probably benign	Het
Or51k1	A	G	7: 103,661,261 (GRCm39)	I216T	probably benign	Het
Or8g22	T	C	9: 38,958,191 (GRCm39)	T175A	probably benign	Het
Pcnx1	T	C	12: 82,038,832 (GRCm39)		probably benign	Het
Pkhd1l1	T	A	15: 44,419,404 (GRCm39)	N2956K	possibly damaging	Het
Plcl1	T	A	1: 55,754,742 (GRCm39)	W1030R	probably damaging	Het
Polr2i	G	A	7: 29,932,511 (GRCm39)	V73M	probably damaging	Het
Prr14l	T	A	5: 32,988,903 (GRCm39)		probably benign	Het
Pxdn	G	T	12: 30,052,418 (GRCm39)	R865L	possibly damaging	Het
Scnn1a	T	C	6: 125,319,550 (GRCm39)		probably benign	Het
Shkbp1	G	T	7: 27,051,451 (GRCm39)	H203N	probably benign	Het
Slc22a14	C	T	9: 119,051,804 (GRCm39)		probably benign	Het
Snap29	C	A	16: 17,246,100 (GRCm39)	T240K	probably damaging	Het
Sp2	C	A	11: 96,848,253 (GRCm39)	G457C	probably damaging	Het
Ssr2	C	T	3: 88,484,187 (GRCm39)		probably benign	Het
Synpo2	A	T	3: 122,910,753 (GRCm39)	C297*	probably null	Het
Tpm3	T	A	3: 89,997,399 (GRCm39)		probably benign	Het
Trmt6	CTG	C	2: 132,650,937 (GRCm39)		probably benign	Het
Trp63	T	C	16: 25,689,837 (GRCm39)	Y431H	probably damaging	Het
Tuba3b	T	A	6: 145,566,886 (GRCm39)	C376S	probably damaging	Het
Ubxn4	G	A	1: 128,190,641 (GRCm39)	E256K	probably benign	Het
Ulk1	G	A	5: 110,935,573 (GRCm39)		probably benign	Het
Usp24	T	C	4: 106,249,557 (GRCm39)	S1425P	probably damaging	Het
Xdh	T	C	17: 74,191,433 (GRCm39)	I1335V	probably benign	Het
Zmynd15	T	C	11: 70,355,058 (GRCm39)	Y352H	probably damaging	Het

Other mutations in Cyp2c39

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00646:Cyp2c39	APN	19	39,501,935 (GRCm39)	splice site	probably benign
IGL01806:Cyp2c39	APN	19	39,525,264 (GRCm39)	missense	probably damaging	1.00
IGL02158:Cyp2c39	APN	19	39,556,574 (GRCm39)	missense	probably benign
IGL02219:Cyp2c39	APN	19	39,556,643 (GRCm39)	utr 3 prime	probably benign
IGL02483:Cyp2c39	APN	19	39,525,231 (GRCm39)	missense	probably damaging	1.00
IGL02490:Cyp2c39	APN	19	39,527,446 (GRCm39)	missense	probably damaging	1.00
IGL02597:Cyp2c39	APN	19	39,549,331 (GRCm39)	nonsense	probably null
IGL03089:Cyp2c39	APN	19	39,552,295 (GRCm39)	missense	probably benign	0.00
IGL03197:Cyp2c39	APN	19	39,555,361 (GRCm39)	missense	probably damaging	1.00
IGL03392:Cyp2c39	APN	19	39,501,767 (GRCm39)	missense	probably benign	0.40
G1citation:Cyp2c39	UTSW	19	39,525,261 (GRCm39)	missense	probably damaging	0.98
R0369:Cyp2c39	UTSW	19	39,502,079 (GRCm39)	missense	probably damaging	1.00
R0585:Cyp2c39	UTSW	19	39,525,203 (GRCm39)	missense	probably benign	0.43
R0586:Cyp2c39	UTSW	19	39,501,934 (GRCm39)	splice site	probably benign
R0906:Cyp2c39	UTSW	19	39,499,315 (GRCm39)	start codon destroyed	probably null
R1613:Cyp2c39	UTSW	19	39,527,455 (GRCm39)	missense	probably damaging	0.99
R1711:Cyp2c39	UTSW	19	39,555,335 (GRCm39)	missense	probably damaging	1.00
R1780:Cyp2c39	UTSW	19	39,527,295 (GRCm39)	splice site	probably benign
R2208:Cyp2c39	UTSW	19	39,549,405 (GRCm39)	missense	possibly damaging	0.56
R2327:Cyp2c39	UTSW	19	39,527,397 (GRCm39)	missense	probably benign	0.07
R3431:Cyp2c39	UTSW	19	39,525,306 (GRCm39)	missense	probably damaging	0.99
R4847:Cyp2c39	UTSW	19	39,549,340 (GRCm39)	missense	probably damaging	1.00
R4866:Cyp2c39	UTSW	19	39,502,020 (GRCm39)	missense	probably benign	0.43
R4900:Cyp2c39	UTSW	19	39,502,020 (GRCm39)	missense	probably benign	0.43
R4974:Cyp2c39	UTSW	19	39,552,323 (GRCm39)	missense	probably benign	0.25
R5159:Cyp2c39	UTSW	19	39,549,378 (GRCm39)	missense	possibly damaging	0.96
R5470:Cyp2c39	UTSW	19	39,501,974 (GRCm39)	missense	possibly damaging	0.54
R5860:Cyp2c39	UTSW	19	39,525,270 (GRCm39)	missense	probably damaging	1.00
R6013:Cyp2c39	UTSW	19	39,501,969 (GRCm39)	missense	probably benign	0.03
R6018:Cyp2c39	UTSW	19	39,499,436 (GRCm39)	missense	probably damaging	1.00
R6230:Cyp2c39	UTSW	19	39,525,246 (GRCm39)	missense	probably damaging	1.00
R6261:Cyp2c39	UTSW	19	39,556,463 (GRCm39)	missense	probably damaging	1.00
R6345:Cyp2c39	UTSW	19	39,501,616 (GRCm39)	critical splice acceptor site	probably null
R6345:Cyp2c39	UTSW	19	39,501,615 (GRCm39)	critical splice acceptor site	probably null
R6822:Cyp2c39	UTSW	19	39,525,261 (GRCm39)	missense	probably damaging	0.98
R6925:Cyp2c39	UTSW	19	39,501,639 (GRCm39)	missense	probably damaging	1.00
R7578:Cyp2c39	UTSW	19	39,499,400 (GRCm39)	missense	probably damaging	1.00
R7871:Cyp2c39	UTSW	19	39,549,405 (GRCm39)	missense	possibly damaging	0.56
R8032:Cyp2c39	UTSW	19	39,499,426 (GRCm39)	missense	probably benign	0.00
R8293:Cyp2c39	UTSW	19	39,552,411 (GRCm39)	missense	probably benign	0.03
R8393:Cyp2c39	UTSW	19	39,525,255 (GRCm39)	missense	possibly damaging	0.87
R8954:Cyp2c39	UTSW	19	39,525,197 (GRCm39)	missense	probably benign	0.04
R8985:Cyp2c39	UTSW	19	39,552,419 (GRCm39)	missense	probably benign	0.34
R9146:Cyp2c39	UTSW	19	39,527,344 (GRCm39)	missense
R9224:Cyp2c39	UTSW	19	39,527,332 (GRCm39)	missense	probably benign	0.17
R9472:Cyp2c39	UTSW	19	39,502,043 (GRCm39)	missense	probably damaging	1.00
R9615:Cyp2c39	UTSW	19	39,501,617 (GRCm39)	missense	probably benign	0.02
R9616:Cyp2c39	UTSW	19	39,501,648 (GRCm39)	missense	probably damaging	1.00
R9717:Cyp2c39	UTSW	19	39,556,493 (GRCm39)	missense	possibly damaging	0.80

Predicted Primers

PCR Primer
(F):5'- GCTCCGTGAAATGGTCAAGGGTAAA -3'
(R):5'- TGGTAGATTAAGTGGGTAGGGTAACAACAG -3'

Sequencing Primer
(F):5'- TCTCTATCAAAGGGACAAAGTCTAC -3'
(R):5'- CTCTCTTTCTGAAAAGTGACAGC -3'

Posted On

2013-04-11