Mutagenetix > Incidental Mutations

Incidental Mutation 'R1735:Pcdhb18'

199685

Institutional Source

Beutler Lab

Gene Symbol

Pcdhb18

Ensembl Gene

ENSMUSG00000048347

Gene Name

protocadherin beta 18

Synonyms

PcdhbR, Pcdhb9

MMRRC Submission

039767-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.191) question?

Stock #

R1735 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

37489465-37494505 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 37490769 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Leucine at position 384 (H384L)

Ref Sequence

ENSEMBL: ENSMUSP00000052113 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000053856] [ENSMUST00000055949] [ENSMUST00000115661] [ENSMUST00000194544]

AlphaFold

Q91Y02

Predicted Effect

probably benign
Transcript: ENSMUST00000053856

SMART Domains

Protein: ENSMUSP00000055072
Gene: ENSMUSG00000046387

Domain	Start	End	E-Value	Type
Pfam:Cadherin_2	31	112	5.8e-35	PFAM
CA	155	240	2.42e-18	SMART
CA	264	345	8.03e-24	SMART
CA	368	449	5.81e-21	SMART
CA	473	559	8.15e-25	SMART
CA	589	670	6.34e-13	SMART
Pfam:Cadherin_C_2	686	770	1.8e-25	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000055949
AA Change: H384L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000052113
Gene: ENSMUSG00000048347
AA Change: H384L

Domain	Start	End	E-Value	Type
signal peptide	1	26	N/A	INTRINSIC
Pfam:Cadherin_2	30	112	3.1e-34	PFAM
CA	155	240	7.97e-19	SMART
CA	264	345	6.27e-26	SMART
CA	368	449	2.63e-19	SMART
CA	473	559	7.09e-25	SMART
CA	589	670	2.87e-11	SMART
Pfam:Cadherin_C_2	687	771	7.9e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115661

SMART Domains

Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458

Domain	Start	End	E-Value	Type
CA	20	131	5.3e-2	SMART
CA	155	240	1.51e-19	SMART
CA	264	348	7.6e-25	SMART
CA	372	453	1.42e-24	SMART
CA	477	563	1.42e-24	SMART
CA	594	674	4.12e-12	SMART
low complexity region	706	721	N/A	INTRINSIC
Pfam:Cadherin_tail	796	930	3.9e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000193984

Predicted Effect

probably benign
Transcript: ENSMUST00000194544

SMART Domains

Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836

Domain	Start	End	E-Value	Type
Blast:CA	18	66	5e-20	BLAST

Coding Region Coverage

1x: 97.6%
3x: 97.0%
10x: 95.3%
20x: 92.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9230110C19Rik	A	C	9: 8,027,265	S91A	probably benign	Het
Acot5	A	T	12: 84,075,487	I282F	probably benign	Het
Adam19	C	A	11: 46,138,917	Q730K	probably benign	Het
Adgrv1	A	G	13: 81,487,947	V3481A	possibly damaging	Het
Akr1c20	T	C	13: 4,487,208	D316G	probably benign	Het
Ap3b1	G	A	13: 94,493,717	V827I	unknown	Het
Aph1a	T	A	3: 95,895,509	D140E	probably damaging	Het
Arhgef19	G	T	4: 141,249,618	V502L	possibly damaging	Het
Arl9	T	C	5: 77,006,626	F67S	probably damaging	Het
B430305J03Rik	G	A	3: 61,363,940		probably benign	Het
B4galnt2	A	G	11: 95,890,983	F119L	probably damaging	Het
Bcap29	T	A	12: 31,630,840	N49I	probably damaging	Het
C77080	G	T	4: 129,223,577	S476R	probably damaging	Het
Capn11	T	A	17: 45,632,401	K616*	probably null	Het
Cdh12	T	A	15: 21,520,366	Y306N	probably damaging	Het
Cep350	T	A	1: 155,953,214	N315Y	probably damaging	Het
Cited2	C	A	10: 17,724,046	P34Q	probably damaging	Het
Cmya5	A	T	13: 93,089,789	D2930E	probably benign	Het
Cog3	T	A	14: 75,729,321	K470*	probably null	Het
Commd10	A	G	18: 46,990,485	T136A	probably benign	Het
Csf2ra	C	A	19: 61,226,344	D181Y	probably damaging	Het
Csmd1	T	A	8: 15,932,610	I2686F	probably damaging	Het
Dhx29	T	C	13: 112,945,086	S415P	probably benign	Het
Dsel	A	T	1: 111,860,915	F630Y	probably damaging	Het
Ell	T	A	8: 70,578,940	I96N	possibly damaging	Het
Ephx2	T	A	14: 66,088,303	I358L	probably benign	Het
Fam162b	A	G	10: 51,587,211	I120T	probably damaging	Het
Fam187a	T	C	11: 102,885,780	Y137H	probably damaging	Het
Fastk	T	C	5: 24,441,803	E403G	probably damaging	Het
Fcrlb	C	A	1: 170,907,332	V409F	probably benign	Het
Flot2	G	T	11: 78,058,005	A269S	probably benign	Het
Gpd2	T	A	2: 57,355,551	N419K	probably damaging	Het
Hecw1	A	T	13: 14,377,765	M61K	probably null	Het
Htr2a	T	C	14: 74,706,128	F383L	probably damaging	Het
Kctd6	C	T	14: 8,222,253	R32C	probably damaging	Het
Khdc1a	A	G	1: 21,350,965	T125A	probably benign	Het
Klhl40	T	C	9: 121,779,938	S390P	probably benign	Het
Lonp1	G	A	17: 56,614,956	T808I	probably damaging	Het
Loxhd1	A	C	18: 77,404,889	D1342A	probably damaging	Het
Lrat	T	C	3: 82,897,110	I187V	probably benign	Het
Lrif1	T	C	3: 106,735,846	*238Q	probably null	Het
Lrp2bp	T	C	8: 46,011,988	F48S	probably benign	Het
Mafg	A	G	11: 120,629,678	M32T	possibly damaging	Het
Map4	C	T	9: 110,034,955	T416I	probably benign	Het
N4bp2	T	C	5: 65,808,316	F1236S	probably damaging	Het
Nfatc3	A	G	8: 106,083,834	D414G	probably damaging	Het
Nrip2	T	G	6: 128,405,074	V50G	probably damaging	Het
Olfr1449	T	A	19: 12,934,843	I35N	probably damaging	Het
Olfr16	A	G	1: 172,956,807	N4S	probably benign	Het
Olfr432	A	T	1: 174,050,799	K142I	probably benign	Het
Olfr608	T	A	7: 103,470,146	F36I	possibly damaging	Het
Pik3r1	A	T	13: 101,686,374	Y607N	probably damaging	Het
Plagl2	G	A	2: 153,232,477	T168I	probably damaging	Het
Polr2a	A	G	11: 69,742,396	S912P	probably damaging	Het
Ppp1r16b	A	G	2: 158,761,495	K447E	possibly damaging	Het
Prkd1	T	C	12: 50,342,039	E907G	possibly damaging	Het
Rabep2	A	G	7: 126,444,540	R470G	probably damaging	Het
Rasal2	T	C	1: 157,174,160	Y518C	probably damaging	Het
Rbmxl1	A	G	8: 78,506,082	Y211H	probably damaging	Het
Rdh7	T	C	10: 127,884,585	Y306C	probably benign	Het
Rtn3	T	C	19: 7,457,911	I220V	probably damaging	Het
Scn8a	A	G	15: 101,015,861	N1045D	possibly damaging	Het
Scube1	T	C	15: 83,607,437	H952R	probably damaging	Het
Sf3b1	A	G	1: 55,000,652	I690T	probably damaging	Het
Sharpin	T	C	15: 76,347,936	K240R	probably benign	Het
Skint5	A	G	4: 113,563,459	I1108T	unknown	Het
Snip1	A	G	4: 125,071,201	D133G	probably benign	Het
St3gal3	T	C	4: 118,014,774	Y77C	probably damaging	Het
Sytl3	T	C	17: 6,715,481	V112A	probably benign	Het
Tnxb	C	T	17: 34,717,970	P3718S	probably damaging	Het
Ttc24	A	T	3: 88,073,094		probably null	Het
Ubr3	A	T	2: 70,009,129	E1529V	probably damaging	Het
Utrn	T	A	10: 12,710,138	H965L	probably benign	Het
Xrn2	T	A	2: 147,061,423	L781Q	probably damaging	Het
Zbtb11	T	C	16: 55,990,682	I401T	probably benign	Het
Zc3h14	C	T	12: 98,758,580	P167L	probably damaging	Het
Zfp609	G	T	9: 65,703,092	S863*	probably null	Het

Other mutations in Pcdhb18

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01685:Pcdhb18	APN	18	37491931	missense	probably benign	0.35
IGL02651:Pcdhb18	APN	18	37491181	nonsense	probably null
IGL02721:Pcdhb18	APN	18	37490031	missense	probably benign	0.33
IGL02945:Pcdhb18	APN	18	37489995	missense	probably benign	0.34
IGL03030:Pcdhb18	APN	18	37490733	missense	probably damaging	1.00
IGL03346:Pcdhb18	APN	18	37489621	start codon destroyed	probably null	0.99
R0206:Pcdhb18	UTSW	18	37490187	missense	possibly damaging	0.80
R0208:Pcdhb18	UTSW	18	37490187	missense	possibly damaging	0.80
R0680:Pcdhb18	UTSW	18	37490294	missense	probably damaging	0.98
R1517:Pcdhb18	UTSW	18	37489620	start codon destroyed	probably null	1.00
R1519:Pcdhb18	UTSW	18	37490892	missense	probably damaging	1.00
R1597:Pcdhb18	UTSW	18	37491767	missense	probably benign	0.19
R2089:Pcdhb18	UTSW	18	37490600	missense	probably damaging	0.99
R2091:Pcdhb18	UTSW	18	37490600	missense	probably damaging	0.99
R2091:Pcdhb18	UTSW	18	37490600	missense	probably damaging	0.99
R2206:Pcdhb18	UTSW	18	37491289	missense	probably damaging	0.99
R2207:Pcdhb18	UTSW	18	37491289	missense	probably damaging	0.99
R4773:Pcdhb18	UTSW	18	37490454	missense	probably damaging	1.00
R4837:Pcdhb18	UTSW	18	37489814	missense	probably damaging	1.00
R5271:Pcdhb18	UTSW	18	37491596	missense	possibly damaging	0.94
R5568:Pcdhb18	UTSW	18	37491800	missense	probably benign	0.44
R5647:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5648:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5690:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5692:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5812:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5813:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5928:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5929:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R5930:Pcdhb18	UTSW	18	37491935	missense	possibly damaging	0.63
R6209:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R6255:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.05
R6602:Pcdhb18	UTSW	18	37490480	missense	probably damaging	0.99
R6699:Pcdhb18	UTSW	18	37491952	missense	probably benign	0.00
R7055:Pcdhb18	UTSW	18	37490811	missense	possibly damaging	0.64
R7197:Pcdhb18	UTSW	18	37490383	missense	probably benign	0.06
R7289:Pcdhb18	UTSW	18	37490647	missense	probably damaging	1.00
R7345:Pcdhb18	UTSW	18	37491923	missense	probably benign	0.19
R7403:Pcdhb18	UTSW	18	37491897	missense	probably benign	0.09
R7541:Pcdhb18	UTSW	18	37491609	missense	probably damaging	1.00
R7651:Pcdhb18	UTSW	18	37490993	missense	probably benign	0.00
R7670:Pcdhb18	UTSW	18	37491696	missense	probably damaging	1.00
R7673:Pcdhb18	UTSW	18	37491737	missense	probably benign	0.39
R7783:Pcdhb18	UTSW	18	37489821	missense	probably benign	0.01
R7819:Pcdhb18	UTSW	18	37491255	missense	possibly damaging	0.60
R7826:Pcdhb18	UTSW	18	37490942	missense	probably damaging	0.98
R7857:Pcdhb18	UTSW	18	37491311	missense	probably benign
R7866:Pcdhb18	UTSW	18	37490459	missense	probably damaging	0.99
R7895:Pcdhb18	UTSW	18	37490467	missense	probably benign	0.27
R8773:Pcdhb18	UTSW	18	37491509	missense	probably damaging	1.00
R8810:Pcdhb18	UTSW	18	37490321	missense	probably benign	0.00
R8891:Pcdhb18	UTSW	18	37490647	missense	probably damaging	1.00
R8938:Pcdhb18	UTSW	18	37490484	missense	probably benign	0.00
R9303:Pcdhb18	UTSW	18	37491951	missense	probably benign
R9305:Pcdhb18	UTSW	18	37491951	missense	probably benign
X0022:Pcdhb18	UTSW	18	37490273	missense	probably benign	0.06

Predicted Primers

PCR Primer
(F):5'- GGGGAAATCACTCTCAAAGCCTTGC -3'
(R):5'- GCATTGTCATTGTCGTCCAGCACC -3'

Sequencing Primer
(F):5'- CAAAGCCTTGCTTGACTATGAG -3'
(R):5'- CCTGTAAGGCTTCATAGTCCAGAG -3'

Posted On

2014-05-23