Mutagenetix > Incidental Mutation

Incidental Mutation 'R1741:Padi4'

200335

Institutional Source

Beutler Lab

Gene Symbol

Padi4

Ensembl Gene

ENSMUSG00000025330

Gene Name

peptidyl arginine deiminase, type IV

Synonyms

PAD type IV, Pdi4, Pad4

MMRRC Submission

039773-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1741 (G1)

Quality Score

201

Status

Not validated

Chromosome

Chromosomal Location

140745865-140774236 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 140746170 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 652 (V652A)

Ref Sequence

ENSEMBL: ENSMUSP00000026381 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026381] [ENSMUST00000038749] [ENSMUST00000130267]

AlphaFold

Q9Z183

Predicted Effect

probably damaging
Transcript: ENSMUST00000026381
AA Change: V652A

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000026381
Gene: ENSMUSG00000025330
AA Change: V652A

Domain	Start	End	E-Value	Type
Pfam:PAD_N	1	111	2.3e-38	PFAM
Pfam:PAD_M	113	273	2.4e-63	PFAM
Pfam:PAD	283	663	2.4e-176	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000038749

SMART Domains

Protein: ENSMUSP00000044044
Gene: ENSMUSG00000040935

Domain	Start	End	E-Value	Type
Pfam:PAD_N	1	112	5.6e-38	PFAM
Pfam:PAD_M	114	269	6e-53	PFAM
Pfam:PAD	280	679	4.7e-149	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130267

SMART Domains

Protein: ENSMUSP00000123490
Gene: ENSMUSG00000040935

Domain	Start	End	E-Value	Type
Pfam:PAD_M	39	191	1.1e-57	PFAM

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.5%
20x: 92.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of a gene family which encodes enzymes responsible for the conversion of arginine residues to citrulline residues. This gene may play a role in granulocyte and macrophage development leading to inflammation and immune response. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mice are viable albeit reduced number than expected were born from heterozygous crosses, and shows decreased antibacterial immune responses. Mice homozygous for a different knock-out allele exhibit decreased weight loss in response to viral infection. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700034E13Rik	A	G	18: 52,660,506	N37S	probably damaging	Het
9530053A07Rik	G	T	7: 28,157,854	C2209F	probably damaging	Het
Acad10	T	C	5: 121,647,836	K230R	probably damaging	Het
Actl7a	A	G	4: 56,744,252	N260D	probably benign	Het
Adam24	T	C	8: 40,679,603	Y37H	probably benign	Het
Ahcy	G	A	2: 155,064,234	A229V	probably benign	Het
Ap3b2	A	G	7: 81,467,599	V563A	possibly damaging	Het
Bcl9l	T	A	9: 44,509,689	M1427K	probably damaging	Het
Btf3	C	T	13: 98,316,296	M1I	probably null	Het
Btg4	A	T	9: 51,116,610	I27L	probably benign	Het
Ccdc171	A	G	4: 83,620,839	Y366C	probably damaging	Het
Chd3	A	G	11: 69,355,654	Y1085H	probably damaging	Het
Cnot10	T	C	9: 114,597,824	D616G	possibly damaging	Het
Crlf1	C	A	8: 70,500,906	D243E	probably damaging	Het
Cyp2b23	A	G	7: 26,673,077	V371A	possibly damaging	Het
Dennd2a	A	G	6: 39,493,157	S534P	probably damaging	Het
Eln	A	G	5: 134,729,184	V185A	unknown	Het
Epor	C	T	9: 21,959,771	G301D	probably damaging	Het
Fam83f	T	G	15: 80,692,267	V373G	possibly damaging	Het
Fbxl21	A	T	13: 56,537,102	T340S	probably benign	Het
Fez1	T	A	9: 36,843,733	D9E	probably damaging	Het
Fsip2	T	C	2: 82,989,912	F5330L	probably benign	Het
Glis1	G	A	4: 107,568,347	R197Q	probably damaging	Het
Gm10277	TC	T	11: 77,786,002		probably null	Het
Gpr158	A	G	2: 21,827,548	N1153S	probably benign	Het
Gramd4	T	C	15: 86,091,529		probably null	Het
Hhatl	T	A	9: 121,789,059	Y210F	possibly damaging	Het
Hltf	T	C	3: 20,086,188	W422R	probably damaging	Het
Hspa5	T	C	2: 34,772,692	S87P	possibly damaging	Het
Il21	T	C	3: 37,227,662	H111R	probably benign	Het
Ip6k1	G	A	9: 108,040,984	G73S	probably benign	Het
Kdm5b	A	G	1: 134,618,017	D972G	possibly damaging	Het
Kif21b	C	T	1: 136,156,142	A709V	probably damaging	Het
Kmt2d	T	C	15: 98,845,234		probably benign	Het
Lrrc14b	A	G	13: 74,363,586	L125P	probably damaging	Het
Mapk8ip3	A	G	17: 24,899,854	S1169P	probably damaging	Het
Me3	A	T	7: 89,851,833	Y584F	probably damaging	Het
Mxra7	T	G	11: 116,816,244		probably null	Het
Nf1	T	C	11: 79,443,931	S870P	probably benign	Het
Npr2	G	A	4: 43,643,350	G525S	probably damaging	Het
Nyap1	A	T	5: 137,733,125	S726T	probably damaging	Het
Pclo	A	G	5: 14,676,510		probably benign	Het
Pgm2	G	A	4: 99,964,865		probably null	Het
Piezo2	A	G	18: 63,021,173	S2512P	probably damaging	Het
Ptbp3	A	T	4: 59,482,624	D386E	probably damaging	Het
Ptk2	A	G	15: 73,242,406	V701A	possibly damaging	Het
Ptpn3	A	G	4: 57,254,922	V154A	probably damaging	Het
Rassf4	T	C	6: 116,639,489	E287G	probably damaging	Het
Rnh1	C	T	7: 141,164,023	R174H	probably benign	Het
Scn9a	T	A	2: 66,487,594	I1517F	probably damaging	Het
Sftpb	C	A	6: 72,305,813	A90E	probably benign	Het
Slc39a14	T	C	14: 70,318,744	K61R	probably damaging	Het
Tmem132d	A	C	5: 127,784,858	M733R	probably benign	Het
Tmem248	A	G	5: 130,236,823	I156V	probably benign	Het
Traf2	T	C	2: 25,524,483	D339G	probably damaging	Het
Trappc11	A	G	8: 47,529,327		probably null	Het
Tuba8	T	A	6: 121,222,768	I137N	possibly damaging	Het
Txlnb	A	G	10: 17,838,947	T376A	probably damaging	Het
Usp34	A	G	11: 23,364,103	T663A	probably benign	Het
Vmn2r26	T	A	6: 124,061,472	F669I	probably damaging	Het
Wdr95	G	A	5: 149,595,396		probably null	Het
Wfdc8	T	G	2: 164,608,869		probably benign	Het
Zfp64	A	C	2: 168,926,318	V458G	probably benign	Het
Zfp868	C	T	8: 69,611,868	G272D	probably damaging	Het

Other mutations in Padi4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02439:Padi4	APN	4	140746221	missense	probably damaging	1.00
R0411:Padi4	UTSW	4	140748449	critical splice donor site	probably benign
R0528:Padi4	UTSW	4	140769429	missense	possibly damaging	0.75
R0544:Padi4	UTSW	4	140748449	critical splice donor site	probably benign
R0547:Padi4	UTSW	4	140748449	critical splice donor site	probably benign
R0548:Padi4	UTSW	4	140748449	critical splice donor site	probably benign
R0633:Padi4	UTSW	4	140757585	missense	probably damaging	1.00
R1112:Padi4	UTSW	4	140758116	missense	probably benign	0.04
R1411:Padi4	UTSW	4	140752603	missense	probably damaging	1.00
R1573:Padi4	UTSW	4	140757570	missense	possibly damaging	0.86
R2256:Padi4	UTSW	4	140759940	missense	possibly damaging	0.77
R2257:Padi4	UTSW	4	140759940	missense	possibly damaging	0.77
R5257:Padi4	UTSW	4	140746204	missense	probably benign	0.01
R5266:Padi4	UTSW	4	140746131	missense	possibly damaging	0.86
R6044:Padi4	UTSW	4	140748127	missense	possibly damaging	0.94
R6057:Padi4	UTSW	4	140760040	missense	probably damaging	0.99
R6180:Padi4	UTSW	4	140756473	missense	possibly damaging	0.87
R7197:Padi4	UTSW	4	140761658	nonsense	probably null
R7395:Padi4	UTSW	4	140761672	missense	probably damaging	1.00
R8421:Padi4	UTSW	4	140748222	missense	probably damaging	1.00
R8546:Padi4	UTSW	4	140757530	missense	probably damaging	0.98
R8697:Padi4	UTSW	4	140757919	frame shift	probably null
R8857:Padi4	UTSW	4	140774161	missense	probably damaging	0.99
R9060:Padi4	UTSW	4	140750642	missense	probably damaging	1.00
R9261:Padi4	UTSW	4	140752615	missense	probably damaging	1.00
R9453:Padi4	UTSW	4	140752639	missense	probably benign	0.15
RF004:Padi4	UTSW	4	140759958	missense	probably damaging	1.00
X0028:Padi4	UTSW	4	140746124	makesense	probably null
Z1177:Padi4	UTSW	4	140756447	missense	possibly damaging	0.77

Predicted Primers

PCR Primer
(F):5'- GCTATGCAAGGACCATTTGAGGACAC -3'
(R):5'- AGAACCAGTCTTAGTCCAGAGACCTG -3'

Sequencing Primer
(F):5'- ACATGTCACAGCAGGGAC -3'
(R):5'- AGGTGAACATGCTGGTCC -3'

Posted On

2014-05-23