Mutagenetix > Incidental Mutation

Incidental Mutation 'R1741:Rassf4'

200347

Institutional Source

Beutler Lab

Gene Symbol

Rassf4

Ensembl Gene

ENSMUSG00000042129

Gene Name

Ras association (RalGDS/AF-6) domain family member 4

Synonyms

3830411C14Rik

MMRRC Submission

039773-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.075) question?

Stock #

R1741 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

116609969-116650797 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 116616450 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 287 (E287G)

Ref Sequence

ENSEMBL: ENSMUSP00000144786 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035842] [ENSMUST00000203029]

AlphaFold

Q8CB96

Predicted Effect

probably damaging
Transcript: ENSMUST00000035842
AA Change: E287G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000048267
Gene: ENSMUSG00000042129
AA Change: E287G

Domain	Start	End	E-Value	Type
low complexity region	6	16	N/A	INTRINSIC
low complexity region	46	57	N/A	INTRINSIC
RA	173	263	1.36e-15	SMART
Pfam:Nore1-SARAH	276	315	1.7e-15	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000203029
AA Change: E287G

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000144786
Gene: ENSMUSG00000042129
AA Change: E287G

Domain	Start	End	E-Value	Type
low complexity region	6	16	N/A	INTRINSIC
low complexity region	46	57	N/A	INTRINSIC
RA	173	263	8.7e-18	SMART
Pfam:Nore1-SARAH	276	303	1.6e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203477

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204313

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.5%
20x: 92.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The function of this gene has not yet been determined but may involve a role in tumor suppression. Alternative splicing of this gene results in several transcript variants; however, most of the variants have not been fully described. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700034E13Rik	A	G	18: 52,793,578 (GRCm39)	N37S	probably damaging	Het
Acad10	T	C	5: 121,785,899 (GRCm39)	K230R	probably damaging	Het
Actl7a	A	G	4: 56,744,252 (GRCm39)	N260D	probably benign	Het
Adam24	T	C	8: 41,132,642 (GRCm39)	Y37H	probably benign	Het
Ahcy	G	A	2: 154,906,154 (GRCm39)	A229V	probably benign	Het
Ap3b2	A	G	7: 81,117,347 (GRCm39)	V563A	possibly damaging	Het
Bcl9l	T	A	9: 44,420,986 (GRCm39)	M1427K	probably damaging	Het
Btf3	C	T	13: 98,452,804 (GRCm39)	M1I	probably null	Het
Btg4	A	T	9: 51,027,910 (GRCm39)	I27L	probably benign	Het
Ccdc171	A	G	4: 83,539,076 (GRCm39)	Y366C	probably damaging	Het
Chd3	A	G	11: 69,246,480 (GRCm39)	Y1085H	probably damaging	Het
Cnot10	T	C	9: 114,426,892 (GRCm39)	D616G	possibly damaging	Het
Crlf1	C	A	8: 70,953,556 (GRCm39)	D243E	probably damaging	Het
Cyp2b23	A	G	7: 26,372,502 (GRCm39)	V371A	possibly damaging	Het
Dennd2a	A	G	6: 39,470,091 (GRCm39)	S534P	probably damaging	Het
Eln	A	G	5: 134,758,038 (GRCm39)	V185A	unknown	Het
Epor	C	T	9: 21,871,067 (GRCm39)	G301D	probably damaging	Het
Fam83f	T	G	15: 80,576,468 (GRCm39)	V373G	possibly damaging	Het
Fbxl21	A	T	13: 56,684,915 (GRCm39)	T340S	probably benign	Het
Fcgbpl1	G	T	7: 27,857,279 (GRCm39)	C2209F	probably damaging	Het
Fez1	T	A	9: 36,755,029 (GRCm39)	D9E	probably damaging	Het
Fsip2	T	C	2: 82,820,256 (GRCm39)	F5330L	probably benign	Het
Glis1	G	A	4: 107,425,544 (GRCm39)	R197Q	probably damaging	Het
Gm10277	TC	T	11: 77,676,828 (GRCm39)		probably null	Het
Gpr158	A	G	2: 21,832,359 (GRCm39)	N1153S	probably benign	Het
Gramd4	T	C	15: 85,975,730 (GRCm39)		probably null	Het
Hhatl	T	A	9: 121,618,125 (GRCm39)	Y210F	possibly damaging	Het
Hltf	T	C	3: 20,140,352 (GRCm39)	W422R	probably damaging	Het
Hspa5	T	C	2: 34,662,704 (GRCm39)	S87P	possibly damaging	Het
Il21	T	C	3: 37,281,811 (GRCm39)	H111R	probably benign	Het
Ip6k1	G	A	9: 107,918,183 (GRCm39)	G73S	probably benign	Het
Kdm5b	A	G	1: 134,545,755 (GRCm39)	D972G	possibly damaging	Het
Kif21b	C	T	1: 136,083,880 (GRCm39)	A709V	probably damaging	Het
Kmt2d	T	C	15: 98,743,115 (GRCm39)		probably benign	Het
Lrrc14b	A	G	13: 74,511,705 (GRCm39)	L125P	probably damaging	Het
Mapk8ip3	A	G	17: 25,118,828 (GRCm39)	S1169P	probably damaging	Het
Me3	A	T	7: 89,501,041 (GRCm39)	Y584F	probably damaging	Het
Mxra7	T	G	11: 116,707,070 (GRCm39)		probably null	Het
Nf1	T	C	11: 79,334,757 (GRCm39)	S870P	probably benign	Het
Npr2	G	A	4: 43,643,350 (GRCm39)	G525S	probably damaging	Het
Nyap1	A	T	5: 137,731,387 (GRCm39)	S726T	probably damaging	Het
Padi4	A	G	4: 140,473,481 (GRCm39)	V652A	probably damaging	Het
Pclo	A	G	5: 14,726,524 (GRCm39)		probably benign	Het
Pgm1	G	A	4: 99,822,062 (GRCm39)		probably null	Het
Piezo2	A	G	18: 63,154,244 (GRCm39)	S2512P	probably damaging	Het
Ptbp3	A	T	4: 59,482,624 (GRCm39)	D386E	probably damaging	Het
Ptk2	A	G	15: 73,114,255 (GRCm39)	V701A	possibly damaging	Het
Ptpn3	A	G	4: 57,254,922 (GRCm39)	V154A	probably damaging	Het
Rnh1	C	T	7: 140,743,936 (GRCm39)	R174H	probably benign	Het
Scn9a	T	A	2: 66,317,938 (GRCm39)	I1517F	probably damaging	Het
Sftpb	C	A	6: 72,282,797 (GRCm39)	A90E	probably benign	Het
Slc39a14	T	C	14: 70,556,193 (GRCm39)	K61R	probably damaging	Het
Tmem132d	A	C	5: 127,861,922 (GRCm39)	M733R	probably benign	Het
Tmem248	A	G	5: 130,265,664 (GRCm39)	I156V	probably benign	Het
Traf2	T	C	2: 25,414,495 (GRCm39)	D339G	probably damaging	Het
Trappc11	A	G	8: 47,982,362 (GRCm39)		probably null	Het
Tuba8	T	A	6: 121,199,727 (GRCm39)	I137N	possibly damaging	Het
Txlnb	A	G	10: 17,714,695 (GRCm39)	T376A	probably damaging	Het
Usp34	A	G	11: 23,314,103 (GRCm39)	T663A	probably benign	Het
Vmn2r26	T	A	6: 124,038,431 (GRCm39)	F669I	probably damaging	Het
Wdr95	G	A	5: 149,518,861 (GRCm39)		probably null	Het
Wfdc8	T	G	2: 164,450,789 (GRCm39)		probably benign	Het
Zfp64	A	C	2: 168,768,238 (GRCm39)	V458G	probably benign	Het
Zfp868	C	T	8: 70,064,519 (GRCm39)	G272D	probably damaging	Het

Other mutations in Rassf4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00482:Rassf4	APN	6	116,622,089 (GRCm39)	missense	possibly damaging	0.47
IGL01132:Rassf4	APN	6	116,636,568 (GRCm39)	splice site	probably benign
IGL01637:Rassf4	APN	6	116,618,651 (GRCm39)	missense	probably damaging	1.00
IGL02000:Rassf4	APN	6	116,622,933 (GRCm39)	missense	probably benign	0.20
IGL02748:Rassf4	APN	6	116,616,418 (GRCm39)	missense	possibly damaging	0.93
IGL02976:Rassf4	APN	6	116,615,209 (GRCm39)	missense	probably damaging	0.96
IGL03394:Rassf4	APN	6	116,618,708 (GRCm39)	missense	probably damaging	1.00
R0573:Rassf4	UTSW	6	116,624,516 (GRCm39)	splice site	probably benign
R0599:Rassf4	UTSW	6	116,622,897 (GRCm39)	missense	probably damaging	1.00
R1750:Rassf4	UTSW	6	116,617,228 (GRCm39)	missense	probably damaging	1.00
R2117:Rassf4	UTSW	6	116,622,088 (GRCm39)	missense	possibly damaging	0.86
R2369:Rassf4	UTSW	6	116,615,258 (GRCm39)	missense	probably damaging	0.97
R2916:Rassf4	UTSW	6	116,618,701 (GRCm39)	missense	probably damaging	1.00
R2918:Rassf4	UTSW	6	116,618,701 (GRCm39)	missense	probably damaging	1.00
R4829:Rassf4	UTSW	6	116,622,103 (GRCm39)	missense	possibly damaging	0.80
R5716:Rassf4	UTSW	6	116,638,828 (GRCm39)	missense	probably benign	0.01
R6769:Rassf4	UTSW	6	116,618,433 (GRCm39)	missense	possibly damaging	0.95
R7304:Rassf4	UTSW	6	116,617,278 (GRCm39)	missense	probably damaging	0.99
R7981:Rassf4	UTSW	6	116,617,218 (GRCm39)	missense	probably damaging	1.00
R8890:Rassf4	UTSW	6	116,617,305 (GRCm39)	missense	probably damaging	1.00
R8921:Rassf4	UTSW	6	116,638,897 (GRCm39)	splice site	probably benign
R9459:Rassf4	UTSW	6	116,618,749 (GRCm39)	critical splice acceptor site	probably null
R9516:Rassf4	UTSW	6	116,617,265 (GRCm39)	missense	possibly damaging	0.89
R9698:Rassf4	UTSW	6	116,618,662 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGCTAACACCCCAGCTTGCTATC -3'
(R):5'- TTTCCTCCAGTGGATGAAGGTTGC -3'

Sequencing Primer
(F):5'- ATCGGTACTAATCAGTGGGGTAG -3'
(R):5'- GCCTTTGAGATAAGAGTAGTCCCTC -3'

Posted On

2014-05-23