Mutagenetix > Incidental Mutation

Incidental Mutation 'R1744:Tnfsf13b'

200591

Institutional Source

Beutler Lab

Gene Symbol

Tnfsf13b

Ensembl Gene

ENSMUSG00000031497

Gene Name

tumor necrosis factor (ligand) superfamily, member 13b

Synonyms

BLyS, TALL-1, zTNF4, D8Ertd387e, BAFF

MMRRC Submission

039776-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.081) question?

Stock #

R1744 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

10056229-10086000 bp(+) (GRCm39)

Type of Mutation

splice site (5 bp from exon)

DNA Base Change (assembly)

G to A at 10081661 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000146694 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033892] [ENSMUST00000033892] [ENSMUST00000207792] [ENSMUST00000207792] [ENSMUST00000208683]

AlphaFold

Q9WU72

Predicted Effect

probably null
Transcript: ENSMUST00000033892

SMART Domains

Protein: ENSMUSP00000033892
Gene: ENSMUSG00000031497

Domain	Start	End	E-Value	Type
low complexity region	48	67	N/A	INTRINSIC
TNF	169	308	1.88e-2	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000033892

SMART Domains

Protein: ENSMUSP00000033892
Gene: ENSMUSG00000031497

Domain	Start	End	E-Value	Type
low complexity region	48	67	N/A	INTRINSIC
TNF	169	308	1.88e-2	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000207792

Predicted Effect

probably null
Transcript: ENSMUST00000207792

Predicted Effect

probably benign
Transcript: ENSMUST00000208683

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208770

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.1%
20x: 91.8%

Validation Efficiency

98% (59/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a cytokine that belongs to the tumor necrosis factor (TNF) ligand family. This cytokine is a ligand for receptors TNFRSF13B/TACI, TNFRSF17/BCMA, and TNFRSF13C/BAFFR. This cytokine is expressed in B cell lineage cells, and acts as a potent B cell activator. It has been also shown to play an important role in the proliferation and differentiation of B cells. Alternatively spliced transcript variants encoding distinct isoforms have been identified. [provided by RefSeq, Mar 2011]
PHENOTYPE: Homozygous null mice have reduced number of B cells and reduced levels of immunoglobulins. [provided by MGI curators]

Allele List at MGI

All alleles(3) : Targeted, knock-out(1) Targeted, other(2)

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrl3	A	G	5: 81,942,267 (GRCm39)	E1247G	probably damaging	Het
Bcl2l15	T	A	3: 103,745,856 (GRCm39)	L165Q	probably damaging	Het
Cd163	C	A	6: 124,283,987 (GRCm39)	A53E	possibly damaging	Het
Cemip2	C	A	19: 21,809,501 (GRCm39)	Y960*	probably null	Het
Ces4a	G	A	8: 105,864,729 (GRCm39)	G69S	probably damaging	Het
Clca3a1	G	T	3: 144,452,596 (GRCm39)	A629D	probably damaging	Het
Csde1	T	A	3: 102,957,631 (GRCm39)	S463R	probably benign	Het
Cth	C	G	3: 157,611,905 (GRCm39)	R304P	probably damaging	Het
D7Ertd443e	A	G	7: 133,951,142 (GRCm39)	V177A	probably benign	Het
Ddx56	G	A	11: 6,216,396 (GRCm39)	R189W	probably damaging	Het
Dennd2a	A	T	6: 39,457,185 (GRCm39)	F752L	probably benign	Het
Gabrp	A	T	11: 33,522,462 (GRCm39)	V28E	probably benign	Het
Gpam	T	C	19: 55,063,023 (GRCm39)	E763G	probably damaging	Het
Hars1	G	A	18: 36,903,885 (GRCm39)	R266C	probably benign	Het
Klf7	C	A	1: 64,118,372 (GRCm39)	R75L	possibly damaging	Het
Kmt2d	T	C	15: 98,762,928 (GRCm39)	K281E	probably damaging	Het
Lbx1	T	C	19: 45,222,652 (GRCm39)	K124E	probably damaging	Het
Lcp2	T	C	11: 34,019,911 (GRCm39)		probably null	Het
Mab21l2	T	C	3: 86,454,211 (GRCm39)	E263G	possibly damaging	Het
Macf1	A	T	4: 123,369,646 (GRCm39)	I140K	probably damaging	Het
Mcemp1	G	A	8: 3,716,054 (GRCm39)	A20T	probably damaging	Het
Met	T	C	6: 17,540,645 (GRCm39)	V137A	possibly damaging	Het
Mgat5	T	C	1: 127,407,206 (GRCm39)	F624S	probably damaging	Het
Nutm2	T	C	13: 50,623,390 (GRCm39)	I29T	probably benign	Het
Ociad1	T	C	5: 73,458,062 (GRCm39)		probably null	Het
Ogfod2	G	A	5: 124,252,219 (GRCm39)		probably null	Het
Or6c69	A	C	10: 129,747,262 (GRCm39)	V295G	probably damaging	Het
Or8g4	A	C	9: 39,661,711 (GRCm39)	T10P	probably benign	Het
Otoa	G	A	7: 120,726,999 (GRCm39)		probably benign	Het
Otud3	A	C	4: 138,623,059 (GRCm39)	L394R	probably damaging	Het
Pde5a	T	C	3: 122,541,546 (GRCm39)	V12A	probably damaging	Het
Plec	C	T	15: 76,070,418 (GRCm39)	V931M	probably damaging	Het
Prr27	A	G	5: 87,990,906 (GRCm39)	I173V	possibly damaging	Het
Psg29	T	C	7: 16,944,278 (GRCm39)	C263R	probably damaging	Het
Ptprm	T	C	17: 66,996,361 (GRCm39)	Y1242C	probably damaging	Het
Retsat	C	T	6: 72,583,558 (GRCm39)	R84*	probably null	Het
Rif1	G	A	2: 52,002,404 (GRCm39)	V1953I	possibly damaging	Het
Ros1	A	T	10: 51,999,475 (GRCm39)	N1137K	probably damaging	Het
Scn1a	T	C	2: 66,152,620 (GRCm39)	H787R	probably benign	Het
Sec16a	T	C	2: 26,329,198 (GRCm39)	E939G	probably damaging	Het
Sh2d4a	G	A	8: 68,783,807 (GRCm39)	G247D	possibly damaging	Het
Siglec1	A	G	2: 130,923,219 (GRCm39)	S509P	probably damaging	Het
Slc25a30	A	G	14: 76,000,770 (GRCm39)	I278T	probably damaging	Het
Slc6a20a	C	T	9: 123,492,058 (GRCm39)	V104I	probably benign	Het
Sp110	G	C	1: 85,522,093 (GRCm39)	T70S	probably benign	Het
Sphkap	G	A	1: 83,255,236 (GRCm39)	R838*	probably null	Het
Stxbp1	A	G	2: 32,696,731 (GRCm39)		probably null	Het
Tmem132b	T	C	5: 125,855,908 (GRCm39)		probably null	Het
Trappc6a	A	G	7: 19,248,154 (GRCm39)	E38G	probably damaging	Het
Trps1	T	C	15: 50,524,609 (GRCm39)	D857G	probably damaging	Het
Tspear	T	A	10: 77,700,718 (GRCm39)		probably null	Het
Vmn1r23	A	T	6: 57,902,910 (GRCm39)	N289K	possibly damaging	Het
Zcchc8	G	A	5: 123,838,436 (GRCm39)	Q701*	probably null	Het
Zfp618	A	T	4: 63,004,871 (GRCm39)		probably benign	Het

Other mutations in Tnfsf13b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01016:Tnfsf13b	APN	8	10,081,612 (GRCm39)	missense	probably damaging	1.00
IGL01383:Tnfsf13b	APN	8	10,081,528 (GRCm39)	missense	probably damaging	0.98
IGL01650:Tnfsf13b	APN	8	10,081,411 (GRCm39)	missense	probably damaging	1.00
Applecrisp	UTSW	8	10,081,534 (GRCm39)	missense	probably damaging	1.00
arrested	UTSW	8	10,081,545 (GRCm39)	missense	possibly damaging	0.48
Frozen	UTSW	8	10,081,661 (GRCm39)	splice site	probably null
F5493:Tnfsf13b	UTSW	8	10,056,916 (GRCm39)	missense	probably damaging	1.00
R0610:Tnfsf13b	UTSW	8	10,081,661 (GRCm39)	splice site	probably null
R0723:Tnfsf13b	UTSW	8	10,057,166 (GRCm39)	splice site	probably null
R1435:Tnfsf13b	UTSW	8	10,085,358 (GRCm39)	missense	probably benign	0.06
R1648:Tnfsf13b	UTSW	8	10,081,534 (GRCm39)	missense	probably damaging	1.00
R2266:Tnfsf13b	UTSW	8	10,057,306 (GRCm39)	missense	probably benign	0.23
R3723:Tnfsf13b	UTSW	8	10,081,545 (GRCm39)	missense	possibly damaging	0.48
R5230:Tnfsf13b	UTSW	8	10,081,608 (GRCm39)	missense	possibly damaging	0.80
R5913:Tnfsf13b	UTSW	8	10,056,988 (GRCm39)	missense	probably damaging	1.00
R6741:Tnfsf13b	UTSW	8	10,057,314 (GRCm39)	missense	possibly damaging	0.66
R7310:Tnfsf13b	UTSW	8	10,081,651 (GRCm39)	nonsense	probably null
R7882:Tnfsf13b	UTSW	8	10,057,078 (GRCm39)	missense	not run
R8420:Tnfsf13b	UTSW	8	10,056,795 (GRCm39)	start gained	probably benign
R9124:Tnfsf13b	UTSW	8	10,056,966 (GRCm39)	missense	probably benign
R9374:Tnfsf13b	UTSW	8	10,085,391 (GRCm39)	missense	possibly damaging	0.74
R9474:Tnfsf13b	UTSW	8	10,081,648 (GRCm39)	missense	probably damaging	1.00
Z1177:Tnfsf13b	UTSW	8	10,085,427 (GRCm39)	missense	probably benign	0.26

Predicted Primers

PCR Primer
(F):5'- CTATACACGGACCCCATCTTTGCTATG -3'
(R):5'- TGCTCCAATGTCAAATTCTGTGACCC -3'

Sequencing Primer
(F):5'- CTATGGGTCATGTCATCCAGAG -3'
(R):5'- actgcctctccatcccc -3'

Posted On

2014-05-23