Mutagenetix > Incidental Mutation

Incidental Mutation 'R1466:Lrrc27'

201185

Institutional Source

Beutler Lab

Gene Symbol

Lrrc27

Ensembl Gene

ENSMUSG00000015980

Gene Name

leucine rich repeat containing 27

Synonyms

1700071K18Rik, 2310044E02Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.055) question?

Stock #

R1466 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

139212988-139242979 bp(+) (GRCm38)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to G at 139230308 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000101710 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000016124] [ENSMUST00000106104]

AlphaFold

Q80YS5

Predicted Effect

probably benign
Transcript: ENSMUST00000016124

SMART Domains

Protein: ENSMUSP00000016124
Gene: ENSMUSG00000015980

Domain	Start	End	E-Value	Type
low complexity region	8	32	N/A	INTRINSIC
LRR_TYP	75	98	1.03e-2	SMART
LRR_TYP	99	122	3.69e-4	SMART
LRR	123	145	7.38e1	SMART
low complexity region	271	283	N/A	INTRINSIC
coiled coil region	336	370	N/A	INTRINSIC
coiled coil region	463	491	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000106104

SMART Domains

Protein: ENSMUSP00000101710
Gene: ENSMUSG00000015980

Domain	Start	End	E-Value	Type
low complexity region	8	32	N/A	INTRINSIC
LRR_TYP	75	98	1.03e-2	SMART
LRR_TYP	99	122	3.69e-4	SMART
LRR	123	145	7.38e1	SMART
low complexity region	271	283	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126199

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126213

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130248

Coding Region Coverage

1x: 97.4%
3x: 96.7%
10x: 94.7%
20x: 90.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 134 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110012J17Rik	T	A	17: 66,380,435 (GRCm38)	D492V	probably damaging	Het
Abca13	T	C	11: 9,570,536 (GRCm38)		probably benign	Het
Abcg8	G	C	17: 84,686,727 (GRCm38)		probably benign	Het
Abhd15	C	T	11: 77,515,410 (GRCm38)	A71V	probably damaging	Het
AC167973.1	A	T	9: 43,265,352 (GRCm38)		noncoding transcript	Het
Adamts12	T	C	15: 11,311,359 (GRCm38)	F1234S	probably benign	Het
Ahnak	A	G	19: 9,015,875 (GRCm38)	D4841G	probably damaging	Het
Akap13	T	C	7: 75,729,049 (GRCm38)	S2095P	possibly damaging	Het
Ampd2	T	C	3: 108,080,337 (GRCm38)		probably null	Het
Arhgef17	G	T	7: 100,929,659 (GRCm38)	P694Q	possibly damaging	Het
Arrdc1	T	C	2: 24,925,795 (GRCm38)	I398V	probably benign	Het
Ash1l	T	C	3: 89,052,065 (GRCm38)	Y2250H	probably damaging	Het
Aspg	A	G	12: 112,121,852 (GRCm38)	N385D	probably benign	Het
Atxn3	G	A	12: 101,926,499 (GRCm38)	R319C	possibly damaging	Het
BC005561	T	A	5: 104,518,257 (GRCm38)	I215N	probably damaging	Het
Brca2	G	A	5: 150,552,258 (GRCm38)	A2478T	probably damaging	Het
Btrc	T	A	19: 45,513,382 (GRCm38)		probably benign	Het
C1s1	C	T	6: 124,531,131 (GRCm38)	C633Y	probably damaging	Het
C8g	C	T	2: 25,500,216 (GRCm38)	A6T	probably benign	Het
Capza2	T	C	6: 17,657,159 (GRCm38)		probably benign	Het
Cbl	A	T	9: 44,154,244 (GRCm38)	V706E	probably benign	Het
Ccdc84	A	T	9: 44,413,680 (GRCm38)		probably benign	Het
Cfhr1	C	T	1: 139,557,574 (GRCm38)	E45K	probably benign	Het
Chd7	G	A	4: 8,840,561 (GRCm38)		probably null	Het
Chek1	G	T	9: 36,725,857 (GRCm38)	A2E	probably damaging	Het
Clcn2	G	A	16: 20,712,552 (GRCm38)		probably benign	Het
Cndp2	G	A	18: 84,677,315 (GRCm38)		probably benign	Het
Cntnap1	C	A	11: 101,180,360 (GRCm38)	F366L	probably damaging	Het
Col5a1	G	T	2: 28,003,846 (GRCm38)		probably benign	Het
Corin	C	T	5: 72,302,790 (GRCm38)		probably null	Het
Crb2	T	C	2: 37,783,388 (GRCm38)	Y99H	probably damaging	Het
Csf3r	T	A	4: 126,031,932 (GRCm38)		probably benign	Het
Ctdspl2	G	A	2: 122,003,929 (GRCm38)	R332K	probably benign	Het
Ctnnbl1	C	T	2: 157,799,417 (GRCm38)		probably benign	Het
Cym	G	A	3: 107,213,458 (GRCm38)	T277I	probably damaging	Het
Cyp2d11	C	T	15: 82,391,735 (GRCm38)	C215Y	probably benign	Het
Dido1	G	A	2: 180,662,328 (GRCm38)	P1261L	probably damaging	Het
Dnah10	T	A	5: 124,763,096 (GRCm38)	Y1265N	probably benign	Het
Dtx3l	G	A	16: 35,932,728 (GRCm38)	L503F	probably damaging	Het
Eda	T	A	X: 100,392,392 (GRCm38)		probably benign	Homo
Efhb	A	G	17: 53,437,178 (GRCm38)	F462L	probably damaging	Het
Enpep	T	A	3: 129,319,448 (GRCm38)	T203S	probably damaging	Het
Exd1	G	A	2: 119,520,734 (GRCm38)		probably benign	Het
Fam184b	G	A	5: 45,580,509 (GRCm38)		probably benign	Het
Fam20b	T	C	1: 156,686,188 (GRCm38)		probably benign	Het
Fat3	A	C	9: 16,375,482 (GRCm38)	V915G	probably damaging	Het
Fbln7	A	G	2: 128,877,429 (GRCm38)	T49A	probably benign	Het
Fcho1	C	T	8: 71,712,560 (GRCm38)	A418T	probably benign	Het
Fgf14	T	A	14: 124,676,539 (GRCm38)	K60M	probably benign	Het
Galnt4	A	G	10: 99,108,709 (GRCm38)	R99G	probably benign	Het
Gimap4	C	A	6: 48,691,282 (GRCm38)	Q196K	probably benign	Het
Glcci1	C	T	6: 8,537,964 (GRCm38)	T6I	probably damaging	Het
Gm10110	A	T	14: 89,898,075 (GRCm38)		noncoding transcript	Het
Gm4884	A	G	7: 41,043,128 (GRCm38)	K174E	probably damaging	Het
Gm6583	C	T	5: 112,354,764 (GRCm38)	G358D	probably benign	Het
Grip2	A	T	6: 91,788,443 (GRCm38)	D19E	probably damaging	Het
Grk4	T	C	5: 34,694,750 (GRCm38)	S113P	probably benign	Het
Hectd3	G	A	4: 116,996,566 (GRCm38)	E220K	probably damaging	Het
Helz2	G	A	2: 181,236,297 (GRCm38)	P903S	probably damaging	Het
Hydin	T	A	8: 110,532,953 (GRCm38)	V2519E	possibly damaging	Het
Igf2r	A	T	17: 12,717,269 (GRCm38)		probably benign	Het
Ints11	G	A	4: 155,888,110 (GRCm38)		probably null	Het
Kif1a	A	G	1: 93,054,929 (GRCm38)	W718R	possibly damaging	Het
Kif1b	A	T	4: 149,223,252 (GRCm38)	Y839N	probably damaging	Het
Kif20b	T	A	19: 34,950,599 (GRCm38)	V1047D	probably benign	Het
Klhl23	T	C	2: 69,833,888 (GRCm38)	I527T	probably damaging	Het
Klra10	T	A	6: 130,279,315 (GRCm38)	R125S	probably damaging	Het
Klra10	T	C	6: 130,279,431 (GRCm38)	N87D	probably damaging	Het
Lars	G	A	18: 42,210,050 (GRCm38)	R1101C	probably damaging	Het
Lcn4	G	A	2: 26,668,576 (GRCm38)	P166L	probably damaging	Het
Letmd1	T	A	15: 100,472,542 (GRCm38)		probably null	Het
Map4k2	G	T	19: 6,341,917 (GRCm38)	W87L	probably damaging	Het
Mccc1	A	G	3: 35,974,286 (GRCm38)	V457A	probably benign	Het
Mdn1	T	A	4: 32,730,788 (GRCm38)	S2886T	probably benign	Het
Mgat4a	A	T	1: 37,464,406 (GRCm38)		probably benign	Het
Mmp1b	A	T	9: 7,384,779 (GRCm38)		probably benign	Het
Mroh2b	G	T	15: 4,925,684 (GRCm38)	D720Y	probably damaging	Het
Mrpl24	T	A	3: 87,921,928 (GRCm38)	Y21*	probably null	Het
Mrps35	C	T	6: 147,055,984 (GRCm38)	T169M	probably damaging	Het
Muc2	A	G	7: 141,748,974 (GRCm38)	Y457C	probably damaging	Het
Muc4	G	A	16: 32,753,595 (GRCm38)	G1157D	probably benign	Het
Myg1	T	A	15: 102,337,390 (GRCm38)	L275Q	probably damaging	Het
Naga	T	A	15: 82,334,788 (GRCm38)	M237L	probably null	Het
Nek1	C	T	8: 61,125,136 (GRCm38)		probably benign	Het
Oc90	T	A	15: 65,897,720 (GRCm38)	Y96F	probably damaging	Het
Olfr1029	T	A	2: 85,975,995 (GRCm38)	F251I	probably damaging	Het
Olfr103	A	T	17: 37,336,956 (GRCm38)	L92H	probably benign	Het
Olfr1253	C	T	2: 89,752,267 (GRCm38)	C187Y	probably damaging	Het
Olfr46	A	G	7: 140,610,969 (GRCm38)	I268V	probably benign	Het
Olfr522	A	G	7: 140,162,203 (GRCm38)	V249A	probably damaging	Het
Orc4	A	T	2: 48,909,494 (GRCm38)	C324S	possibly damaging	Het
Pald1	T	C	10: 61,348,525 (GRCm38)		probably benign	Het
Paox	A	G	7: 140,129,281 (GRCm38)		probably benign	Het
Pcdh10	T	G	3: 45,379,974 (GRCm38)	L241R	probably damaging	Het
Pdzrn4	T	C	15: 92,770,537 (GRCm38)	S857P	probably benign	Het
Plec	C	T	15: 76,185,908 (GRCm38)	E1000K	possibly damaging	Het
Plvap	A	T	8: 71,508,481 (GRCm38)	V149D	probably benign	Het
Ppef1	C	A	X: 160,625,674 (GRCm38)		probably null	Homo
Prkaa1	C	A	15: 5,178,798 (GRCm38)	P507T	probably benign	Het
Psmd2	A	G	16: 20,657,965 (GRCm38)		probably benign	Het
Ptch1	A	G	13: 63,524,969 (GRCm38)	Y804H	probably benign	Het
R3hdm2	A	G	10: 127,476,690 (GRCm38)	I434V	probably benign	Het
Rbm28	G	A	6: 29,155,017 (GRCm38)		probably benign	Het
Rfx5	T	A	3: 94,956,303 (GRCm38)	Y88N	probably damaging	Het
Rnase2b	A	T	14: 51,162,839 (GRCm38)	K126*	probably null	Het
Rpl3l	A	G	17: 24,730,871 (GRCm38)	I15V	probably benign	Het
Saal1	G	T	7: 46,702,545 (GRCm38)		probably null	Het
Sbpl	A	C	17: 23,953,254 (GRCm38)	D230E	unknown	Het
Scn10a	T	C	9: 119,666,490 (GRCm38)	Y322C	probably damaging	Het
Sec16a	A	T	2: 26,431,157 (GRCm38)	Y1308N	probably damaging	Het
Sis	A	T	3: 72,932,060 (GRCm38)	D824E	possibly damaging	Het
Slc25a36	A	G	9: 97,080,355 (GRCm38)	F194L	probably damaging	Het
Slc27a4	T	A	2: 29,811,190 (GRCm38)	V331E	probably damaging	Het
Slc7a11	G	T	3: 50,381,073 (GRCm38)		probably null	Het
Slco4c1	A	T	1: 96,841,172 (GRCm38)	S322T	probably damaging	Het
Smarcc2	A	T	10: 128,474,245 (GRCm38)	T376S	probably damaging	Het
Srebf1	C	T	11: 60,200,702 (GRCm38)	R999H	probably benign	Het
St3gal3	A	C	4: 118,107,662 (GRCm38)	M1R	probably null	Het
Syp	A	T	X: 7,648,705 (GRCm38)		probably benign	Homo
Tas1r2	A	G	4: 139,669,411 (GRCm38)	D687G	probably damaging	Het
Tekt4	A	T	17: 25,472,074 (GRCm38)	Q118L	probably benign	Het
Tph2	T	C	10: 115,079,695 (GRCm38)	N480S	probably benign	Het
Tsc2	A	T	17: 24,608,973 (GRCm38)	M839K	probably damaging	Het
Ttc22	T	C	4: 106,622,780 (GRCm38)	F77S	probably damaging	Het
Uaca	C	T	9: 60,854,321 (GRCm38)	A205V	possibly damaging	Het
Ubp1	T	G	9: 113,944,835 (GRCm38)		probably benign	Het
Uhmk1	A	T	1: 170,208,653 (GRCm38)		probably null	Het
Usp17lc	A	G	7: 103,418,941 (GRCm38)	H481R	possibly damaging	Het
Vwa3a	A	G	7: 120,768,165 (GRCm38)	Y181C	probably damaging	Het
Wdr26	C	T	1: 181,185,934 (GRCm38)		probably benign	Het
Wfikkn2	G	A	11: 94,238,895 (GRCm38)	T140I	probably damaging	Het
Zfp704	G	T	3: 9,447,348 (GRCm38)	T288N	possibly damaging	Het
Zfp93	T	C	7: 24,276,096 (GRCm38)	V502A	probably damaging	Het
Zzef1	C	T	11: 72,924,679 (GRCm38)	P2942S	probably damaging	Het

Other mutations in Lrrc27

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01668:Lrrc27	APN	7	139,227,911 (GRCm38)	intron	probably benign
IGL02095:Lrrc27	APN	7	139,230,253 (GRCm38)	missense	probably benign	0.04
IGL02489:Lrrc27	APN	7	139,226,061 (GRCm38)	missense	probably benign	0.01
IGL03080:Lrrc27	APN	7	139,230,237 (GRCm38)	missense	probably benign	0.03
R0372:Lrrc27	UTSW	7	139,226,187 (GRCm38)	missense	probably benign	0.17
R2401:Lrrc27	UTSW	7	139,223,613 (GRCm38)	missense	probably damaging	1.00
R2876:Lrrc27	UTSW	7	139,228,684 (GRCm38)	intron	probably benign
R3113:Lrrc27	UTSW	7	139,218,307 (GRCm38)	missense	probably damaging	1.00
R4214:Lrrc27	UTSW	7	139,223,693 (GRCm38)	missense	probably damaging	1.00
R4707:Lrrc27	UTSW	7	139,242,698 (GRCm38)	missense	probably benign	0.02
R4784:Lrrc27	UTSW	7	139,242,698 (GRCm38)	missense	probably benign	0.02
R5070:Lrrc27	UTSW	7	139,214,799 (GRCm38)	missense	probably damaging	0.99
R5855:Lrrc27	UTSW	7	139,218,335 (GRCm38)	unclassified	probably benign
R6408:Lrrc27	UTSW	7	139,218,268 (GRCm38)	missense	probably benign	0.14
R6993:Lrrc27	UTSW	7	139,242,624 (GRCm38)	missense	probably damaging	0.99
R7332:Lrrc27	UTSW	7	139,242,745 (GRCm38)	missense	probably damaging	1.00
R7350:Lrrc27	UTSW	7	139,226,106 (GRCm38)	missense	probably benign	0.01
R7460:Lrrc27	UTSW	7	139,223,658 (GRCm38)	missense	probably damaging	1.00
R7502:Lrrc27	UTSW	7	139,214,832 (GRCm38)	missense	probably benign
R8020:Lrrc27	UTSW	7	139,236,877 (GRCm38)	missense	probably damaging	1.00
R8071:Lrrc27	UTSW	7	139,236,986 (GRCm38)	missense	probably benign	0.01
R8518:Lrrc27	UTSW	7	139,228,774 (GRCm38)	missense	probably benign	0.01
R8728:Lrrc27	UTSW	7	139,242,639 (GRCm38)	missense	probably damaging	1.00
R8734:Lrrc27	UTSW	7	139,216,599 (GRCm38)	unclassified	probably benign
R9141:Lrrc27	UTSW	7	139,227,945 (GRCm38)	missense	probably benign	0.03
R9355:Lrrc27	UTSW	7	139,242,732 (GRCm38)	missense	probably damaging	0.98
R9387:Lrrc27	UTSW	7	139,227,921 (GRCm38)	nonsense	probably null
R9627:Lrrc27	UTSW	7	139,228,666 (GRCm38)	intron	probably benign
R9742:Lrrc27	UTSW	7	139,226,313 (GRCm38)	missense	probably benign	0.39
R9779:Lrrc27	UTSW	7	139,236,970 (GRCm38)	missense	possibly damaging	0.95
R9800:Lrrc27	UTSW	7	139,227,997 (GRCm38)	missense	probably benign	0.16
RF018:Lrrc27	UTSW	7	139,226,100 (GRCm38)	missense	probably benign	0.03
X0065:Lrrc27	UTSW	7	139,230,246 (GRCm38)	missense	probably benign	0.00
X0065:Lrrc27	UTSW	7	139,230,245 (GRCm38)	missense	probably benign	0.00
Z1176:Lrrc27	UTSW	7	139,242,720 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

Posted On

2014-05-23