Mutagenetix > Incidental Mutation

Incidental Mutation 'R0058:Sugct'

201432

Institutional Source

Beutler Lab

Gene Symbol

Sugct

Ensembl Gene

ENSMUSG00000055137

Gene Name

succinyl-CoA glutarate-CoA transferase

Synonyms

5033411D12Rik

MMRRC Submission

038352-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.137) question?

Stock #

R0058 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

16857472-17695553 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 17672581 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 39 (L39Q)

Ref Sequence

ENSEMBL: ENSMUSP00000070759 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000068545] [ENSMUST00000221598]

AlphaFold

Q7TNE1

Predicted Effect

probably damaging
Transcript: ENSMUST00000068545
AA Change: L39Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000070759
Gene: ENSMUSG00000055137
AA Change: L39Q

Domain	Start	End	E-Value	Type
low complexity region	12	28	N/A	INTRINSIC
Pfam:CoA_transf_3	39	406	3.4e-127	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000221598

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.0%
20x: 94.8%

Validation Efficiency

100% (74/74)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is similar to members of the CaiB/baiF CoA-transferase protein family. Mutations in this gene are associated with glutaric aciduria type III. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jul 2010]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ache	T	G	5: 137,290,842	V270G	probably damaging	Het
Acss1	A	T	2: 150,628,539	W394R	probably damaging	Het
Adgrv1	A	G	13: 81,182,672	V6088A	possibly damaging	Het
Ankrd36	A	G	11: 5,630,691		probably benign	Het
Anxa1	A	T	19: 20,383,777	Y84N	probably damaging	Het
Arnt2	G	A	7: 84,347,530	R63C	probably damaging	Het
Avpr1b	A	G	1: 131,599,786	T16A	probably benign	Het
Bpifb1	G	A	2: 154,206,540	R165H	possibly damaging	Het
Cables1	A	G	18: 11,923,413	E316G	possibly damaging	Het
Cadm1	A	T	9: 47,850,331	I427L	probably damaging	Het
Ccdc97	T	C	7: 25,715,980	D86G	probably benign	Het
Cgnl1	C	A	9: 71,641,397	D1081Y	probably damaging	Het
Cgnl1	T	A	9: 71,724,840	R410W	probably damaging	Het
Cntnap4	G	A	8: 112,785,784	E593K	probably damaging	Het
Dazap1	T	C	10: 80,261,581		probably benign	Het
Dip2b	A	G	15: 100,215,240	E1512G	probably benign	Het
Dock1	G	A	7: 135,108,761	V1171M	possibly damaging	Het
Dock5	A	T	14: 67,781,036	F1230Y	probably benign	Het
Dym	G	A	18: 75,043,172	E15K	possibly damaging	Het
Ednra	C	A	8: 77,667,322		probably null	Het
Faf1	A	G	4: 109,736,624	Q133R	probably benign	Het
Fbxw28	A	G	9: 109,328,211	I323T	probably benign	Het
Fcer2a	T	C	8: 3,688,111		probably benign	Het
Fmo2	A	T	1: 162,886,324	S204R	probably benign	Het
Frmd4b	A	G	6: 97,423,499	V63A	probably damaging	Het
Fzd8	G	A	18: 9,213,985	A356T	possibly damaging	Het
Ghitm	A	G	14: 37,131,592	L97P	probably damaging	Het
Gins4	A	G	8: 23,229,510		probably benign	Het
Golga3	T	A	5: 110,202,777	F766Y	possibly damaging	Het
Hapln1	T	C	13: 89,607,878	I267T	probably benign	Het
Helz	A	T	11: 107,672,558		probably benign	Het
Herc2	T	C	7: 56,170,483	V2851A	possibly damaging	Het
Igkv8-18	G	A	6: 70,356,121		probably benign	Het
Igll1	A	T	16: 16,863,876	V5E	probably benign	Het
Irx3	T	C	8: 91,800,540	T179A	possibly damaging	Het
Kif16b	A	G	2: 142,857,305		probably null	Het
Limk1	A	T	5: 134,659,871	W507R	probably damaging	Het
Marf1	C	T	16: 14,142,534	A549T	probably damaging	Het
Mtif3	C	A	5: 146,956,921	V159F	probably benign	Het
Myh6	C	T	14: 54,963,404	R169Q	probably damaging	Het
Ncoa7	T	A	10: 30,647,541	D887V	probably damaging	Het
Obox7	C	T	7: 14,664,388	P76S	probably benign	Het
Olfr1335	A	G	4: 118,809,480	M128T	probably benign	Het
Olfr323	A	T	11: 58,625,668	I126N	probably damaging	Het
Pitpnm2	G	A	5: 124,124,030	A862V	probably damaging	Het
Pkd1	G	C	17: 24,564,703	A162P	probably benign	Het
Plce1	A	G	19: 38,525,184	D309G	possibly damaging	Het
Plk4	T	C	3: 40,805,872	V401A	probably benign	Het
Prdx3	T	C	19: 60,874,512		probably benign	Het
Prrc2c	C	T	1: 162,698,884	V253I	unknown	Het
Ranbp2	T	A	10: 58,480,531	S2358T	probably damaging	Het
Setd2	T	A	9: 110,594,426	V2183E	probably damaging	Het
Sgsm1	T	A	5: 113,285,087	S232C	probably damaging	Het
Skint6	A	T	4: 113,046,815		probably benign	Het
Slc15a2	A	G	16: 36,754,547	I531T	probably benign	Het
Slc36a1	C	T	11: 55,221,994		probably benign	Het
Sorbs2	T	A	8: 45,785,254		probably null	Het
Sorbs2	C	A	8: 45,796,263	D831E	probably damaging	Het
Sptan1	T	C	2: 29,993,696		probably null	Het
Stam	T	C	2: 14,138,141	C336R	probably damaging	Het
Stil	G	T	4: 115,041,298	A1042S	probably damaging	Het
Stxbp5l	T	A	16: 37,142,374	D773V	possibly damaging	Het
Tep1	A	G	14: 50,834,065	V2041A	possibly damaging	Het
Tex15	C	T	8: 33,581,502		probably benign	Het
Tlr9	T	G	9: 106,224,965	L485R	possibly damaging	Het
Tmem207	A	G	16: 26,524,829		probably benign	Het
Triml2	T	C	8: 43,185,269		probably benign	Het
Trip6	A	G	5: 137,310,845		probably benign	Het
Tspear	T	C	10: 77,869,631	F288L	probably benign	Het
Vmn1r179	C	T	7: 23,929,167	T261I	possibly damaging	Het
Zfp644	A	T	5: 106,637,003	S559R	possibly damaging	Het

Other mutations in Sugct

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00725:Sugct	APN	13	17662772	missense	probably damaging	1.00
IGL00917:Sugct	APN	13	16857918	nonsense	probably null
IGL02118:Sugct	APN	13	17452520	nonsense	probably null
IGL02267:Sugct	APN	13	17644865	missense	possibly damaging	0.94
IGL02285:Sugct	APN	13	17672596	missense	possibly damaging	0.51
IGL02412:Sugct	APN	13	17662801	missense	probably damaging	1.00
IGL02420:Sugct	APN	13	17452468	missense	probably damaging	1.00
IGL02703:Sugct	APN	13	17452540	missense	possibly damaging	0.94
IGL03098:Sugct	UTSW	13	17671736	missense	probably damaging	1.00
R0024:Sugct	UTSW	13	16857869	missense	probably benign	0.01
R0024:Sugct	UTSW	13	16857869	missense	probably benign	0.01
R1472:Sugct	UTSW	13	17452546	missense	probably benign	0.26
R1709:Sugct	UTSW	13	17672566	missense	probably damaging	0.99
R1780:Sugct	UTSW	13	17452454	splice site	probably null
R2189:Sugct	UTSW	13	17662266	missense	probably benign	0.09
R4420:Sugct	UTSW	13	17452545	missense	probably damaging	1.00
R4763:Sugct	UTSW	13	17662787	missense	probably damaging	1.00
R5197:Sugct	UTSW	13	17323276	missense	probably damaging	0.99
R5310:Sugct	UTSW	13	17252560	nonsense	probably null
R5401:Sugct	UTSW	13	16857870	missense	probably damaging	1.00
R6695:Sugct	UTSW	13	17323230	missense	possibly damaging	0.94
R6962:Sugct	UTSW	13	16858021	splice site	probably null
R6991:Sugct	UTSW	13	17554380	missense	probably benign	0.23
R7135:Sugct	UTSW	13	17302009	missense	probably benign	0.00
R7141:Sugct	UTSW	13	17644787	missense	possibly damaging	0.76
R7367:Sugct	UTSW	13	17644814	missense	probably damaging	0.97
R7753:Sugct	UTSW	13	17577519	missense	possibly damaging	0.79
R8053:Sugct	UTSW	13	17301969	missense	probably damaging	1.00
R8234:Sugct	UTSW	13	16857874	missense	probably benign	0.01
R8336:Sugct	UTSW	13	16857919	missense	probably benign	0.30
R8351:Sugct	UTSW	13	17252558	missense	probably damaging	1.00
R8451:Sugct	UTSW	13	17252558	missense	probably damaging	1.00
R8826:Sugct	UTSW	13	17252595	critical splice acceptor site	probably null
R9102:Sugct	UTSW	13	17323248	missense	probably benign	0.15
R9231:Sugct	UTSW	13	17452486	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- ACCTGGTCTTTCAACTTTTATAACTTCTGCTC -3'
(R):5'- GCCTCCCTTATCTTGGTCTCTGTGTTTC -3'

Sequencing Primer
(F):5'- gtggcagaggcaggcag -3'
(R):5'- GAATGAGACAGGCCAAACTTTTC -3'

Posted On

2014-06-10