Mutagenetix > Incidental Mutation

Incidental Mutation 'R1791:Farp1'

201772

Institutional Source

Beutler Lab

Gene Symbol

Farp1

Ensembl Gene

ENSMUSG00000025555

Gene Name

FERM, ARH/RhoGEF and pleckstrin domain protein 1

Synonyms

Cdep

MMRRC Submission

039821-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1791 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

121272612-121521156 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 121494157 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 546 (I546T)

Ref Sequence

ENSEMBL: ENSMUSP00000026635 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026635]

AlphaFold

F8VPU2

Predicted Effect

probably damaging
Transcript: ENSMUST00000026635
AA Change: I546T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000026635
Gene: ENSMUSG00000025555
AA Change: I546T

Domain	Start	End	E-Value	Type
B41	36	230	3.27e-68	SMART
FERM_C	234	324	3.87e-32	SMART
FA	328	374	6.07e-16	SMART
RhoGEF	546	732	2.07e-47	SMART
PH	763	861	1.05e-16	SMART
PH	936	1034	1.55e-19	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130256

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000137971

Meta Mutation Damage Score

0.5823

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.0%
20x: 91.6%

Validation Efficiency

95% (104/110)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein containing a FERM (4.2, exrin, radixin, moesin) domain, a Dbl homology domain, and two pleckstrin homology domains. These domains are found in guanine nucleotide exchange factors and proteins that link the cytoskeleton to the cell membrane. The encoded protein functions in neurons to promote dendritic growth. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Nov 2013]

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	C	A	6: 121,631,571 (GRCm39)	L623M	probably benign	Het
Adrm1b	T	A	3: 92,335,538 (GRCm39)	D388V	probably damaging	Het
Akap13	T	G	7: 75,260,783 (GRCm39)	C333G	probably benign	Het
Akap6	T	C	12: 53,115,908 (GRCm39)	S1004P	probably damaging	Het
Akap7	T	C	10: 25,115,583 (GRCm39)	T181A	probably benign	Het
Ap3b1	A	G	13: 94,545,305 (GRCm39)	E186G	possibly damaging	Het
Arhgap17	T	C	7: 122,885,925 (GRCm39)	T736A	probably benign	Het
Bltp3a	T	A	17: 28,113,720 (GRCm39)	D1297E	probably damaging	Het
Bmp8a	G	T	4: 123,218,378 (GRCm39)	R214S	possibly damaging	Het
Cacna1f	T	C	X: 7,486,678 (GRCm39)	S890P	probably damaging	Het
Cd96	A	T	16: 45,938,362 (GRCm39)	Y34*	probably null	Het
Cdc42ep4	A	G	11: 113,620,163 (GRCm39)	L76P	probably damaging	Het
Cdh23	A	G	10: 60,227,505 (GRCm39)	V1195A	possibly damaging	Het
Cfap57	G	A	4: 118,428,921 (GRCm39)	T1015M	possibly damaging	Het
Chrm3	C	A	13: 9,927,452 (GRCm39)	G528V	probably damaging	Het
Cimap1c	A	T	9: 56,759,027 (GRCm39)	F43I	possibly damaging	Het
Clip4	T	C	17: 72,108,937 (GRCm39)		probably benign	Het
Col9a1	A	T	1: 24,224,386 (GRCm39)	R189S	unknown	Het
Cul4b	A	T	X: 37,636,728 (GRCm39)	I481N	probably damaging	Het
Cyp26b1	A	G	6: 84,561,441 (GRCm39)	S74P	probably benign	Het
Cyp3a57	A	G	5: 145,307,820 (GRCm39)	N192S	probably benign	Het
Dcbld1	A	G	10: 52,195,572 (GRCm39)	D260G	probably damaging	Het
Dhrs7	T	C	12: 72,699,939 (GRCm39)	N231S	probably benign	Het
Disp3	G	A	4: 148,325,975 (GRCm39)	P1261L	probably damaging	Het
Dnaaf4	T	C	9: 72,867,966 (GRCm39)	Y76H	possibly damaging	Het
Eml5	C	A	12: 98,853,315 (GRCm39)	V95F	probably benign	Het
Emsy	A	G	7: 98,297,087 (GRCm39)	I32T	probably damaging	Het
Esr1	A	G	10: 4,733,913 (GRCm39)	R238G	probably damaging	Het
Exosc1	T	C	19: 41,916,524 (GRCm39)	K84R	probably benign	Het
F830016B08Rik	T	A	18: 60,433,589 (GRCm39)	V224E	probably benign	Het
Fam228a	T	A	12: 4,782,748 (GRCm39)	N115I	probably damaging	Het
Fbxo30	T	A	10: 11,165,531 (GRCm39)	C84*	probably null	Het
Fbxw17	A	G	13: 50,579,810 (GRCm39)		probably benign	Het
Foxo4	G	C	X: 100,302,069 (GRCm39)	R192P	probably benign	Het
Galnt7	G	T	8: 57,995,564 (GRCm39)	T377K	probably benign	Het
Garnl3	T	C	2: 32,924,139 (GRCm39)	I248V	probably benign	Het
Glod4	A	G	11: 76,128,534 (GRCm39)	Y104H	probably damaging	Het
Glrb	T	C	3: 80,767,482 (GRCm39)	Y246C	probably damaging	Het
Gm5292	A	G	5: 44,101,752 (GRCm39)		noncoding transcript	Het
Gm5424	C	A	10: 61,908,086 (GRCm39)		noncoding transcript	Het
Gm7276	C	T	18: 77,273,431 (GRCm39)		probably benign	Het
Golga5	A	G	12: 102,458,390 (GRCm39)	N611S	possibly damaging	Het
Gucy2c	A	C	6: 136,721,025 (GRCm39)	Y391D	probably damaging	Het
H6pd	A	G	4: 150,066,130 (GRCm39)	I760T	probably damaging	Het
Hapln2	T	A	3: 87,931,712 (GRCm39)	I5F	possibly damaging	Het
Hdac11	G	T	6: 91,145,806 (GRCm39)	V169L	probably benign	Het
Hectd2	T	C	19: 36,586,816 (GRCm39)	V557A	possibly damaging	Het
Huwe1	T	A	X: 150,647,749 (GRCm39)	N747K	probably benign	Het
Ints1	A	G	5: 139,760,277 (GRCm39)	S66P	probably benign	Het
Ipo7	A	G	7: 109,626,339 (GRCm39)	D49G	probably damaging	Het
Itgb4	G	A	11: 115,879,346 (GRCm39)	C575Y	probably damaging	Het
Klhl3	A	G	13: 58,181,044 (GRCm39)	V250A	possibly damaging	Het
Klk1b24	A	G	7: 43,839,852 (GRCm39)		probably null	Het
Map3k11	T	A	19: 5,745,600 (GRCm39)	Y333*	probably null	Het
Mbp	A	G	18: 82,572,474 (GRCm39)	T57A	probably benign	Het
Myh9	A	G	15: 77,657,464 (GRCm39)		probably benign	Het
Mypn	C	T	10: 62,961,472 (GRCm39)	R1040Q	probably damaging	Het
Ncdn	A	G	4: 126,645,732 (GRCm39)		probably null	Het
Ndn	C	T	7: 61,998,256 (GRCm39)	P34L	probably benign	Het
Or10ab5	T	A	7: 108,245,571 (GRCm39)	T71S	probably benign	Het
Or11h4	AGGGATTGGG	AGGGATTGGGATTGGG	14: 50,974,144 (GRCm39)		probably benign	Het
Or4k15c	A	G	14: 50,321,499 (GRCm39)	F213S	probably benign	Het
Or51b6b	T	C	7: 103,310,005 (GRCm39)		probably null	Het
Or51f1	G	A	7: 102,505,569 (GRCm39)	Q307*	probably null	Het
Or8d2	T	A	9: 38,759,901 (GRCm39)	S164T	possibly damaging	Het
Pbx3	T	C	2: 34,114,464 (GRCm39)	T82A	possibly damaging	Het
Pi15	T	C	1: 17,672,945 (GRCm39)	F48S	probably benign	Het
Pkhd1	A	G	1: 20,655,376 (GRCm39)		probably benign	Het
Ppard	C	G	17: 28,505,348 (GRCm39)	R12G	unknown	Het
Prrc2c	G	T	1: 162,532,551 (GRCm39)		probably benign	Het
Prune1	A	G	3: 95,175,553 (GRCm39)	Y41H	possibly damaging	Het
Rcsd1	T	C	1: 165,483,541 (GRCm39)	D150G	probably damaging	Het
Rgs12	A	T	5: 35,123,456 (GRCm39)	Q413L	possibly damaging	Het
Rhox2h	A	G	X: 36,850,848 (GRCm39)	Y185H	probably damaging	Het
Rnf17	T	A	14: 56,741,464 (GRCm39)	C1306*	probably null	Het
Ros1	T	A	10: 51,976,183 (GRCm39)	M1499L	probably benign	Het
Rubcnl	T	C	14: 75,284,989 (GRCm39)	S503P	probably damaging	Het
Sap18b	A	T	8: 96,552,342 (GRCm39)	R117S	probably benign	Het
Shank2	A	G	7: 143,964,336 (GRCm39)	E858G	probably damaging	Het
Shtn1	T	C	19: 59,020,632 (GRCm39)	R197G	probably damaging	Het
Slamf8	G	A	1: 172,412,087 (GRCm39)	R163*	probably null	Het
Slc6a3	T	C	13: 73,714,411 (GRCm39)	I392T	possibly damaging	Het
Sp140	C	T	1: 85,547,772 (GRCm39)		probably benign	Het
Sp8	T	C	12: 118,812,751 (GRCm39)	V202A	possibly damaging	Het
Spata13	T	C	14: 60,946,908 (GRCm39)	V652A	probably damaging	Het
Stpg2	A	T	3: 139,023,162 (GRCm39)	T393S	probably benign	Het
Tagap	T	C	17: 8,150,299 (GRCm39)	M228T	probably damaging	Het
Tagap	A	G	17: 8,152,377 (GRCm39)	T521A	probably benign	Het
Tas2r123	T	G	6: 132,824,528 (GRCm39)	S142A	probably damaging	Het
Tat	T	A	8: 110,718,261 (GRCm39)	S49T	probably benign	Het
Tfap4	G	T	16: 4,369,933 (GRCm39)	Q41K	possibly damaging	Het
Thbs2	T	C	17: 14,906,075 (GRCm39)	N275S	probably benign	Het
Tnfsf14	T	A	17: 57,497,867 (GRCm39)	R122W	probably damaging	Het
Tnrc6a	T	C	7: 122,792,140 (GRCm39)	V1886A	possibly damaging	Het
Trim56	G	A	5: 137,143,252 (GRCm39)	A88V	probably damaging	Het
Trio	A	G	15: 27,841,842 (GRCm39)	Y1081H	probably damaging	Het
Tspear	T	A	10: 77,706,253 (GRCm39)	L341H	possibly damaging	Het
Ube2o	G	A	11: 116,432,320 (GRCm39)	T882I	probably benign	Het
Upk3a	A	G	15: 84,904,815 (GRCm39)	T188A	possibly damaging	Het
Vmn1r79	A	C	7: 11,910,358 (GRCm39)	D80A	probably damaging	Het
Wls	C	A	3: 159,617,450 (GRCm39)	T375K	probably benign	Het
Wnt5a	T	C	14: 28,233,835 (GRCm39)	M1T	probably null	Het
Zcchc4	A	G	5: 52,953,932 (GRCm39)	E204G	probably damaging	Het
Zfp513	G	A	5: 31,357,678 (GRCm39)	P232S	possibly damaging	Het

Other mutations in Farp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00584:Farp1	APN	14	121,474,561 (GRCm39)	missense	probably damaging	1.00
IGL01017:Farp1	APN	14	121,510,186 (GRCm39)	missense	possibly damaging	0.64
IGL02309:Farp1	APN	14	121,480,928 (GRCm39)	missense	probably benign
IGL02376:Farp1	APN	14	121,510,268 (GRCm39)	missense	probably damaging	0.98
IGL03018:Farp1	APN	14	121,339,581 (GRCm39)	missense	probably benign
IGL03400:Farp1	APN	14	121,444,733 (GRCm39)	missense	probably damaging	1.00
R0034:Farp1	UTSW	14	121,492,841 (GRCm39)	missense	probably benign	0.00
R0046:Farp1	UTSW	14	121,492,925 (GRCm39)	missense	probably benign	0.00
R0046:Farp1	UTSW	14	121,492,925 (GRCm39)	missense	probably benign	0.00
R0219:Farp1	UTSW	14	121,481,012 (GRCm39)	missense	possibly damaging	0.88
R0359:Farp1	UTSW	14	121,492,808 (GRCm39)	splice site	probably benign
R0616:Farp1	UTSW	14	121,514,434 (GRCm39)	missense	probably damaging	1.00
R0653:Farp1	UTSW	14	121,471,258 (GRCm39)	critical splice donor site	probably null
R0710:Farp1	UTSW	14	121,474,555 (GRCm39)	missense	probably damaging	1.00
R1391:Farp1	UTSW	14	121,495,378 (GRCm39)	nonsense	probably null
R1920:Farp1	UTSW	14	121,492,908 (GRCm39)	missense	probably benign	0.16
R1953:Farp1	UTSW	14	121,492,894 (GRCm39)	missense	probably benign
R1958:Farp1	UTSW	14	121,456,787 (GRCm39)	critical splice acceptor site	probably null
R2891:Farp1	UTSW	14	121,494,148 (GRCm39)	missense	probably damaging	1.00
R3121:Farp1	UTSW	14	121,460,138 (GRCm39)	splice site	probably benign
R4005:Farp1	UTSW	14	121,513,809 (GRCm39)	missense	probably damaging	0.99
R4257:Farp1	UTSW	14	121,492,891 (GRCm39)	missense	probably benign	0.00
R4559:Farp1	UTSW	14	121,510,213 (GRCm39)	missense	probably damaging	1.00
R4654:Farp1	UTSW	14	121,513,716 (GRCm39)	missense	possibly damaging	0.50
R4739:Farp1	UTSW	14	121,476,199 (GRCm39)	missense	probably damaging	1.00
R4831:Farp1	UTSW	14	121,514,469 (GRCm39)	missense	probably damaging	1.00
R4988:Farp1	UTSW	14	121,513,019 (GRCm39)	missense	probably damaging	1.00
R5379:Farp1	UTSW	14	121,494,169 (GRCm39)	missense	possibly damaging	0.88
R5463:Farp1	UTSW	14	121,472,489 (GRCm39)	missense	probably damaging	1.00
R5466:Farp1	UTSW	14	121,472,489 (GRCm39)	missense	probably damaging	1.00
R5467:Farp1	UTSW	14	121,472,489 (GRCm39)	missense	probably damaging	1.00
R5511:Farp1	UTSW	14	121,474,584 (GRCm39)	missense	probably damaging	0.98
R5520:Farp1	UTSW	14	121,472,489 (GRCm39)	missense	probably damaging	1.00
R5635:Farp1	UTSW	14	121,513,716 (GRCm39)	missense	possibly damaging	0.96
R5639:Farp1	UTSW	14	121,512,794 (GRCm39)	missense	probably damaging	1.00
R5954:Farp1	UTSW	14	121,460,079 (GRCm39)	missense	probably damaging	0.99
R6765:Farp1	UTSW	14	121,460,066 (GRCm39)	missense	probably benign	0.00
R7469:Farp1	UTSW	14	121,512,833 (GRCm39)	missense	probably damaging	1.00
R7549:Farp1	UTSW	14	121,472,589 (GRCm39)	missense	possibly damaging	0.89
R7660:Farp1	UTSW	14	121,514,334 (GRCm39)	missense	probably benign	0.00
R7752:Farp1	UTSW	14	121,495,359 (GRCm39)	missense	probably damaging	1.00
R7788:Farp1	UTSW	14	121,513,665 (GRCm39)	missense	probably benign	0.12
R7911:Farp1	UTSW	14	121,479,818 (GRCm39)	missense	probably damaging	1.00
R8013:Farp1	UTSW	14	121,479,813 (GRCm39)	missense	probably damaging	1.00
R8078:Farp1	UTSW	14	121,513,712 (GRCm39)	missense	probably benign	0.04
R8113:Farp1	UTSW	14	121,513,008 (GRCm39)	missense	probably benign	0.35
R8116:Farp1	UTSW	14	121,471,232 (GRCm39)	missense	probably damaging	1.00
R8716:Farp1	UTSW	14	121,479,855 (GRCm39)	missense	probably benign
R9103:Farp1	UTSW	14	121,509,104 (GRCm39)	missense	possibly damaging	0.55
R9190:Farp1	UTSW	14	121,492,988 (GRCm39)	missense	probably damaging	0.97
R9193:Farp1	UTSW	14	121,518,281 (GRCm39)	missense	probably benign	0.34
R9581:Farp1	UTSW	14	121,480,841 (GRCm39)	missense	probably benign	0.09
RF024:Farp1	UTSW	14	121,474,560 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGGCAGGAAATAGGCTTCTTTAGAC -3'
(R):5'- GTTGACTGCCATAACCCAGG -3'

Sequencing Primer
(F):5'- AGGCTTCTTTAGACTTGATAGTAGC -3'
(R):5'- CCATAACCCAGGGTCAGGATG -3'

Posted On

2014-06-23