Incidental Mutation 'R1795:Atrn'
ID 202105
Institutional Source Beutler Lab
Gene Symbol Atrn
Ensembl Gene ENSMUSG00000027312
Gene Name attractin
Synonyms Mgca
MMRRC Submission 039825-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1795 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 130906495-131030333 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) A to G at 130972288 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 718 (D718G)
Ref Sequence ENSEMBL: ENSMUSP00000028781 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028781]
AlphaFold Q9WU60
Predicted Effect probably benign
Transcript: ENSMUST00000028781
AA Change: D718G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000028781
Gene: ENSMUSG00000027312
AA Change: D718G

DomainStartEndE-ValueType
low complexity region 2 9 N/A INTRINSIC
low complexity region 51 97 N/A INTRINSIC
EGF 99 129 9.85e-5 SMART
CUB 131 247 7.85e-18 SMART
EGF 248 282 1.47e1 SMART
Pfam:Kelch_1 339 382 1.1e-7 PFAM
Pfam:Kelch_5 389 434 2.5e-7 PFAM
Pfam:Kelch_6 390 439 3.3e-8 PFAM
Pfam:Kelch_1 553 606 8.4e-8 PFAM
PSI 646 693 7.41e-7 SMART
PSI 702 747 8.64e-8 SMART
PSI 754 799 2.11e-2 SMART
CLECT 787 918 6.14e-20 SMART
PSI 931 982 1.11e-5 SMART
PSI 985 1060 1.2e-6 SMART
EGF_Lam 1062 1105 1.97e-4 SMART
EGF_like 1108 1154 3.9e0 SMART
transmembrane domain 1278 1300 N/A INTRINSIC
low complexity region 1310 1322 N/A INTRINSIC
low complexity region 1373 1385 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134964
Coding Region Coverage
  • 1x: 97.5%
  • 3x: 96.9%
  • 10x: 95.4%
  • 20x: 92.6%
Validation Efficiency
MGI Phenotype FUNCTION: This gene encodes a widely expressed transmembrane glycoprotein that plays important roles in diverse physiological processes such as regulation of hair pigmentation, monocyte-T cell interaction and control of energy homeostasis. The encoded preproprotein undergoes proteolytic processing to generate a mature, functional protein. Certain mutations in this gene are responsible for the mahogany mouse phenotype of dark brown or black coat on a normally agouti background. Mice with loss-of-function mutations in this gene exhibit black coat color, tremor, adiposity, higher basal metabolic rate, juvenile-onset hypomyelination and age-dependent spongiform neurodegeneration of the central nervous system. [provided by RefSeq, Jul 2016]
PHENOTYPE: Some mutant homozygotes exhibit decreases in phaeomelanin synthesis, body weight, and adiposity; increases in locomotion, and abnormal myelination and vacuolation of the central nervous system resulting in tremors. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 100 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931408C20Rik C A 1: 26,682,989 (GRCm38) G1037* probably null Het
Abca8a A G 11: 110,050,966 (GRCm38) I1159T probably benign Het
Abcc1 T C 16: 14,465,137 (GRCm38) V1159A possibly damaging Het
Abcg5 A G 17: 84,673,579 (GRCm38) I194T probably damaging Het
Abtb2 A G 2: 103,567,024 (GRCm38) T100A probably benign Het
Adam4 C T 12: 81,421,294 (GRCm38) M184I probably benign Het
Afap1l2 T C 19: 56,928,409 (GRCm38) D155G probably damaging Het
Ahnak T C 19: 9,002,438 (GRCm38) V362A possibly damaging Het
Ak7 C T 12: 105,726,223 (GRCm38) R179* probably null Het
Akap8 C A 17: 32,315,477 (GRCm38) G332C probably damaging Het
Akr1e1 T A 13: 4,595,072 (GRCm38) Q204L probably damaging Het
Ankrd12 T C 17: 65,986,227 (GRCm38) E737G possibly damaging Het
Bco2 A G 9: 50,541,169 (GRCm38) S200P possibly damaging Het
C030005K15Rik A T 10: 97,725,786 (GRCm38) S28T unknown Het
Cdc14a T A 3: 116,298,473 (GRCm38) Q356L possibly damaging Het
Cdk5rap3 A G 11: 96,908,828 (GRCm38) L387P probably damaging Het
Celsr1 A T 15: 86,030,323 (GRCm38) S1150T probably damaging Het
Cntfr A G 4: 41,670,841 (GRCm38) probably null Het
Cramp1l T C 17: 24,964,910 (GRCm38) N1244D probably damaging Het
Csmd3 G T 15: 47,857,920 (GRCm38) D1542E possibly damaging Het
Cyp4f17 A T 17: 32,517,969 (GRCm38) I92F probably benign Het
Dhx30 A T 9: 110,107,983 (GRCm38) probably null Het
Dlg1 T A 16: 31,743,147 (GRCm38) H120Q probably benign Het
Dmgdh A T 13: 93,706,699 (GRCm38) M348L probably benign Het
Dnmt3b G A 2: 153,683,639 (GRCm38) E741K possibly damaging Het
Dock3 T G 9: 107,025,335 (GRCm38) H292P probably damaging Het
Elmsan1 A G 12: 84,158,974 (GRCm38) probably null Het
Ercc6 T A 14: 32,517,028 (GRCm38) N24K probably benign Het
Esco2 T C 14: 65,827,277 (GRCm38) Q338R probably benign Het
Etl4 T C 2: 20,808,026 (GRCm38) probably null Het
Exoc7 A T 11: 116,292,521 (GRCm38) I498N probably damaging Het
Fap G A 2: 62,548,589 (GRCm38) S123L probably damaging Het
Foxn1 T C 11: 78,371,225 (GRCm38) E106G probably benign Het
Fscb T A 12: 64,474,401 (GRCm38) D97V probably damaging Het
Gabrg1 T C 5: 70,782,253 (GRCm38) T174A possibly damaging Het
Gan C T 8: 117,196,460 (GRCm38) A461V possibly damaging Het
Gbp2 T A 3: 142,630,523 (GRCm38) D211E possibly damaging Het
Gm10271 A T 10: 116,956,841 (GRCm38) Y47N unknown Het
Gm17333 G T 16: 77,852,823 (GRCm38) noncoding transcript Het
Gm1758 T A 16: 14,502,278 (GRCm38) noncoding transcript Het
Golga3 A G 5: 110,207,627 (GRCm38) K989R possibly damaging Het
Gucy2g C A 19: 55,199,541 (GRCm38) V1041F probably damaging Het
Guk1 A T 11: 59,186,813 (GRCm38) F25I probably benign Het
H2al1o C T X: 9,572,090 (GRCm38) E87K possibly damaging Het
Hemgn C A 4: 46,395,958 (GRCm38) C426F probably damaging Het
Hps3 A G 3: 20,012,695 (GRCm38) probably null Het
Il2rb A T 15: 78,483,987 (GRCm38) D287E probably damaging Het
Ino80 A T 2: 119,406,859 (GRCm38) V1123D probably damaging Het
Kdm2b A G 5: 122,984,460 (GRCm38) probably null Het
Kif21a A T 15: 90,972,727 (GRCm38) probably null Het
Klhl33 A T 14: 50,892,126 (GRCm38) N347K probably damaging Het
Krt2 A G 15: 101,816,426 (GRCm38) F250L possibly damaging Het
Krt82 T A 15: 101,543,384 (GRCm38) N332I possibly damaging Het
Lgi1 A G 19: 38,306,183 (GRCm38) I444V probably benign Het
Lmod1 G A 1: 135,325,124 (GRCm38) V39M probably damaging Het
Lonrf2 G A 1: 38,813,276 (GRCm38) P165S probably benign Het
Mex3d T C 10: 80,381,542 (GRCm38) T149A probably benign Het
Mlxipl A C 5: 135,107,170 (GRCm38) D83A probably damaging Het
Mroh8 T A 2: 157,269,551 (GRCm38) E161V probably benign Het
Mroh9 G A 1: 163,056,778 (GRCm38) T397I probably damaging Het
Mtss1 T C 15: 59,058,400 (GRCm38) D32G possibly damaging Het
Mus81 T C 19: 5,483,476 (GRCm38) D495G probably benign Het
Neurod1 A C 2: 79,454,329 (GRCm38) S237A probably benign Het
Npas1 G A 7: 16,474,800 (GRCm38) R51C probably damaging Het
Olfr743 T C 14: 50,533,702 (GRCm38) S97P possibly damaging Het
P2ry14 T C 3: 59,115,853 (GRCm38) N62S probably damaging Het
Pcdh15 A G 10: 74,624,255 (GRCm38) Y1308C probably damaging Het
Pcdhb14 A T 18: 37,449,535 (GRCm38) M565L probably benign Het
Pde6a A G 18: 61,257,212 (GRCm38) E502G probably damaging Het
Pde8b A G 13: 95,042,019 (GRCm38) V566A probably benign Het
Phf11b G T 14: 59,328,105 (GRCm38) Q108K probably benign Het
Pikfyve T C 1: 65,252,557 (GRCm38) Y1312H probably damaging Het
Plcb3 T C 19: 6,956,013 (GRCm38) probably benign Het
Plxna2 G A 1: 194,806,303 (GRCm38) G1629D probably damaging Het
Plxnb1 T C 9: 109,100,745 (GRCm38) V223A probably benign Het
Prkca A T 11: 108,012,692 (GRCm38) Y285N possibly damaging Het
Prl2a1 A T 13: 27,808,571 (GRCm38) N226I probably damaging Het
Pus7 A C 5: 23,741,916 (GRCm38) M636R probably damaging Het
Samd9l G A 6: 3,375,264 (GRCm38) Q666* probably null Het
Sema3d A G 5: 12,584,887 (GRCm38) D640G probably benign Het
Slc6a15 A G 10: 103,400,260 (GRCm38) I279V probably benign Het
Slk T C 19: 47,620,534 (GRCm38) V642A possibly damaging Het
Spta1 T A 1: 174,245,730 (GRCm38) M2305K probably damaging Het
Srrt T C 5: 137,303,012 (GRCm38) probably benign Het
Stfa2l1 A T 16: 36,156,858 (GRCm38) I8L probably benign Het
Tap1 T C 17: 34,194,925 (GRCm38) L638P probably benign Het
Tbccd1 A T 16: 22,822,245 (GRCm38) L461M probably benign Het
Tecta T C 9: 42,378,049 (GRCm38) T407A probably benign Het
Tmbim7 T C 5: 3,657,493 (GRCm38) probably null Het
Tnrc18 C A 5: 142,815,114 (GRCm38) V30L probably benign Het
Tomm7 A G 5: 23,844,027 (GRCm38) F16S probably damaging Het
Ugt2a2 A G 5: 87,474,456 (GRCm38) S428P probably benign Het
Vmn1r189 T C 13: 22,102,154 (GRCm38) E171G probably benign Het
Vmn1r61 T C 7: 5,611,325 (GRCm38) probably benign Het
Vmn2r120 A T 17: 57,525,038 (GRCm38) S250R probably benign Het
Vmn2r8 T C 5: 108,803,106 (GRCm38) R158G probably benign Het
Vmn2r98 A T 17: 19,066,440 (GRCm38) Y400F probably damaging Het
Vps13c C A 9: 67,893,985 (GRCm38) Y582* probably null Het
Zfp518a T A 19: 40,915,556 (GRCm38) F1310I probably benign Het
Zswim1 A G 2: 164,825,400 (GRCm38) I191V probably benign Het
Other mutations in Atrn
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00337:Atrn APN 2 130,958,079 (GRCm38) missense probably damaging 1.00
IGL00571:Atrn APN 2 130,995,048 (GRCm38) missense probably damaging 1.00
IGL01092:Atrn APN 2 130,947,636 (GRCm38) nonsense probably null
IGL01572:Atrn APN 2 131,002,795 (GRCm38) missense probably damaging 1.00
IGL01924:Atrn APN 2 130,935,565 (GRCm38) missense probably damaging 1.00
IGL02116:Atrn APN 2 130,958,089 (GRCm38) missense probably damaging 1.00
IGL02372:Atrn APN 2 131,002,754 (GRCm38) splice site probably benign
IGL02390:Atrn APN 2 131,020,977 (GRCm38) missense possibly damaging 0.82
IGL02548:Atrn APN 2 130,972,282 (GRCm38) missense probably damaging 1.00
IGL02749:Atrn APN 2 130,947,734 (GRCm38) splice site probably benign
IGL02749:Atrn APN 2 130,970,144 (GRCm38) nonsense probably null
BB010:Atrn UTSW 2 130,995,066 (GRCm38) missense probably damaging 1.00
BB020:Atrn UTSW 2 130,995,066 (GRCm38) missense probably damaging 1.00
R0026:Atrn UTSW 2 130,957,920 (GRCm38) missense probably damaging 1.00
R0403:Atrn UTSW 2 130,906,859 (GRCm38) missense probably damaging 1.00
R0479:Atrn UTSW 2 130,999,165 (GRCm38) nonsense probably null
R0544:Atrn UTSW 2 130,986,826 (GRCm38) missense probably damaging 1.00
R0570:Atrn UTSW 2 130,980,134 (GRCm38) missense probably benign 0.01
R0606:Atrn UTSW 2 130,906,856 (GRCm38) missense possibly damaging 0.90
R0617:Atrn UTSW 2 130,995,085 (GRCm38) critical splice donor site probably null
R0658:Atrn UTSW 2 130,970,227 (GRCm38) critical splice donor site probably null
R1108:Atrn UTSW 2 130,957,914 (GRCm38) missense probably damaging 1.00
R1112:Atrn UTSW 2 130,999,161 (GRCm38) missense probably benign 0.04
R1219:Atrn UTSW 2 131,021,007 (GRCm38) missense possibly damaging 0.90
R1422:Atrn UTSW 2 130,957,914 (GRCm38) missense probably damaging 1.00
R1524:Atrn UTSW 2 130,957,080 (GRCm38) missense probably benign 0.15
R1653:Atrn UTSW 2 130,935,624 (GRCm38) missense probably benign
R1807:Atrn UTSW 2 130,982,772 (GRCm38) missense possibly damaging 0.94
R1920:Atrn UTSW 2 130,995,051 (GRCm38) missense probably damaging 1.00
R1921:Atrn UTSW 2 130,995,051 (GRCm38) missense probably damaging 1.00
R1935:Atrn UTSW 2 130,958,035 (GRCm38) missense probably damaging 1.00
R1982:Atrn UTSW 2 130,970,222 (GRCm38) missense probably benign
R2000:Atrn UTSW 2 130,935,588 (GRCm38) missense probably damaging 1.00
R2143:Atrn UTSW 2 130,957,996 (GRCm38) missense probably benign 0.03
R2336:Atrn UTSW 2 130,957,954 (GRCm38) missense probably damaging 1.00
R2679:Atrn UTSW 2 130,961,675 (GRCm38) critical splice donor site probably null
R3426:Atrn UTSW 2 131,020,956 (GRCm38) missense probably benign 0.06
R3909:Atrn UTSW 2 130,994,207 (GRCm38) missense probably damaging 1.00
R4077:Atrn UTSW 2 130,964,930 (GRCm38) critical splice donor site probably null
R4162:Atrn UTSW 2 130,994,228 (GRCm38) splice site probably benign
R4195:Atrn UTSW 2 130,933,412 (GRCm38) missense probably damaging 1.00
R4364:Atrn UTSW 2 130,970,208 (GRCm38) missense probably benign 0.39
R4465:Atrn UTSW 2 130,960,468 (GRCm38) missense probably benign 0.08
R4510:Atrn UTSW 2 130,935,577 (GRCm38) nonsense probably null
R4511:Atrn UTSW 2 130,935,577 (GRCm38) nonsense probably null
R4527:Atrn UTSW 2 130,973,504 (GRCm38) missense probably benign 0.10
R4586:Atrn UTSW 2 130,982,042 (GRCm38) missense probably damaging 1.00
R4592:Atrn UTSW 2 130,999,130 (GRCm38) intron probably benign
R4658:Atrn UTSW 2 130,933,429 (GRCm38) missense probably damaging 1.00
R4735:Atrn UTSW 2 131,020,990 (GRCm38) missense probably benign 0.06
R4960:Atrn UTSW 2 130,995,047 (GRCm38) nonsense probably null
R4999:Atrn UTSW 2 130,975,954 (GRCm38) missense probably damaging 1.00
R5066:Atrn UTSW 2 130,994,193 (GRCm38) missense possibly damaging 0.60
R5080:Atrn UTSW 2 130,970,124 (GRCm38) missense possibly damaging 0.95
R5141:Atrn UTSW 2 130,999,130 (GRCm38) intron probably benign
R5256:Atrn UTSW 2 130,946,019 (GRCm38) missense probably benign 0.39
R5494:Atrn UTSW 2 131,023,075 (GRCm38) missense probably damaging 1.00
R5678:Atrn UTSW 2 130,970,016 (GRCm38) missense probably damaging 0.96
R5752:Atrn UTSW 2 130,906,544 (GRCm38) unclassified probably benign
R5931:Atrn UTSW 2 130,933,436 (GRCm38) missense possibly damaging 0.56
R6023:Atrn UTSW 2 131,020,980 (GRCm38) missense probably benign 0.25
R6176:Atrn UTSW 2 130,946,091 (GRCm38) missense probably benign 0.31
R6377:Atrn UTSW 2 130,979,969 (GRCm38) missense probably damaging 1.00
R6433:Atrn UTSW 2 131,023,027 (GRCm38) missense probably damaging 1.00
R7226:Atrn UTSW 2 130,986,744 (GRCm38) missense probably damaging 0.99
R7402:Atrn UTSW 2 130,947,600 (GRCm38) missense probably damaging 1.00
R7541:Atrn UTSW 2 130,961,571 (GRCm38) missense possibly damaging 0.46
R7587:Atrn UTSW 2 130,980,114 (GRCm38) missense probably damaging 1.00
R7872:Atrn UTSW 2 130,970,227 (GRCm38) critical splice donor site probably null
R7910:Atrn UTSW 2 130,964,887 (GRCm38) missense probably benign 0.04
R7913:Atrn UTSW 2 130,970,211 (GRCm38) missense probably damaging 1.00
R7933:Atrn UTSW 2 130,995,066 (GRCm38) missense probably damaging 1.00
R8044:Atrn UTSW 2 130,935,529 (GRCm38) missense probably damaging 1.00
R8079:Atrn UTSW 2 131,013,641 (GRCm38) missense probably null 1.00
R8093:Atrn UTSW 2 130,975,988 (GRCm38) missense probably benign 0.00
R8203:Atrn UTSW 2 130,960,549 (GRCm38) missense probably benign 0.00
R8234:Atrn UTSW 2 131,023,000 (GRCm38) critical splice acceptor site probably null
R8462:Atrn UTSW 2 130,935,584 (GRCm38) missense probably damaging 1.00
R8816:Atrn UTSW 2 131,004,574 (GRCm38) missense probably damaging 1.00
R8816:Atrn UTSW 2 130,906,878 (GRCm38) missense probably damaging 1.00
R8831:Atrn UTSW 2 130,906,601 (GRCm38) missense probably benign 0.22
R8937:Atrn UTSW 2 130,999,237 (GRCm38) missense probably benign 0.00
R9161:Atrn UTSW 2 130,935,550 (GRCm38) missense probably damaging 1.00
R9722:Atrn UTSW 2 130,961,616 (GRCm38) missense probably damaging 1.00
R9786:Atrn UTSW 2 130,944,889 (GRCm38) missense probably damaging 1.00
RF009:Atrn UTSW 2 130,906,922 (GRCm38) missense probably benign 0.12
X0024:Atrn UTSW 2 130,958,139 (GRCm38) missense probably damaging 1.00
Z1088:Atrn UTSW 2 130,973,399 (GRCm38) missense probably benign
Z1176:Atrn UTSW 2 130,946,193 (GRCm38) missense probably benign 0.27
Z1177:Atrn UTSW 2 130,946,042 (GRCm38) missense probably damaging 0.99
Predicted Primers PCR Primer
(F):5'- TTTAACCTAAACATGGCACTGC -3'
(R):5'- TCCCTTCCTAAGAGAAAACCTGAG -3'

Sequencing Primer
(F):5'- GAGCTTTCCTACCTCAGA -3'
(R):5'- CTGAGCAACAGTAGAATTCAAATCG -3'
Posted On 2014-06-23