Mutagenetix > Incidental Mutation

Incidental Mutation 'R1786:Cars1'

202816

Institutional Source

Beutler Lab

Gene Symbol

Cars1

Ensembl Gene

ENSMUSG00000010755

Gene Name

cysteinyl-tRNA synthetase 1

Synonyms

Cars, CA3

MMRRC Submission

039817-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1786 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

143110967-143153827 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 143146211 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Methionine at position 71 (R71M)

Ref Sequence

ENSEMBL: ENSMUSP00000010899 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000010899] [ENSMUST00000105909] [ENSMUST00000154022]

AlphaFold

Q9ER72

Predicted Effect

probably damaging
Transcript: ENSMUST00000010899
AA Change: R71M

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000010899
Gene: ENSMUSG00000010755
AA Change: R71M

Domain	Start	End	E-Value	Type
Pfam:tRNA-synt_1e	124	537	2.7e-128	PFAM
Blast:DALR_2	584	644	2e-13	BLAST
coiled coil region	728	768	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000105909

SMART Domains

Protein: ENSMUSP00000101529
Gene: ENSMUSG00000010755

Domain	Start	End	E-Value	Type
Pfam:tRNA-synt_1e	41	454	2e-129	PFAM
Pfam:tRNA-synt_1g	387	465	1.2e-6	PFAM
Blast:DALR_2	501	561	1e-13	BLAST
coiled coil region	645	685	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000121587

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134128

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151574

Predicted Effect

probably benign
Transcript: ENSMUST00000154022

Meta Mutation Damage Score

0.5029

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.3%
20x: 92.4%

Validation Efficiency

97% (98/101)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a class 1 aminoacyl-tRNA synthetase, cysteinyl-tRNA synthetase. Each of the twenty aminoacyl-tRNA synthetases catalyzes the aminoacylation of a specific tRNA or tRNA isoaccepting family with the cognate amino acid. This gene is one of several located near the imprinted gene domain on chromosome 11p15.5, an important tumor-suppressor gene region. Alterations in this region have been associated with Beckwith-Wiedemann syndrome, Wilms tumor, rhabdomyosarcoma, adrenocortical carcinoma, and lung, ovarian and breast cancers. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Aug 2010]

Allele List at MGI

All alleles(37) : Targeted, other(2) Gene trapped(35)

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2ml1	T	A	6: 128,553,223 (GRCm39)	N178I	probably damaging	Het
Abcc4	G	A	14: 118,790,761 (GRCm39)	R749C	probably damaging	Het
Acot11	T	C	4: 106,619,232 (GRCm39)	E201G	probably damaging	Het
Akap13	G	T	7: 75,261,182 (GRCm39)	A1269S	probably benign	Het
Aldh4a1	T	C	4: 139,371,439 (GRCm39)	V451A	probably benign	Het
Aopep	T	A	13: 63,357,963 (GRCm39)	C656S	probably benign	Het
Aox3	A	G	1: 58,209,002 (GRCm39)	H845R	probably damaging	Het
Asb6	G	A	2: 30,717,088 (GRCm39)	R46W	probably damaging	Het
Bpifb6	T	C	2: 153,748,781 (GRCm39)	F259S	probably damaging	Het
Cad	T	A	5: 31,215,416 (GRCm39)	F76I	probably damaging	Het
Camk2b	T	C	11: 5,927,880 (GRCm39)	E390G	probably benign	Het
Ccdc170	T	G	10: 4,469,043 (GRCm39)	I197S	probably benign	Het
Ccn4	G	A	15: 66,778,338 (GRCm39)	C53Y	probably damaging	Het
Cdc20b	A	T	13: 113,217,668 (GRCm39)	K362N	probably damaging	Het
Cntrl	CAGAG	CAG	2: 35,012,818 (GRCm39)		probably null	Het
Cpd	T	C	11: 76,683,624 (GRCm39)	D1045G	probably benign	Het
Crocc	T	C	4: 140,749,113 (GRCm39)	D1564G	probably damaging	Het
Csf1r	A	T	18: 61,262,149 (GRCm39)	M802L	probably damaging	Het
Dctn4	T	C	18: 60,679,407 (GRCm39)		probably null	Het
Dnah5	A	G	15: 28,313,932 (GRCm39)	Q1916R	probably damaging	Het
Dpysl2	A	G	14: 67,100,114 (GRCm39)		probably benign	Het
Dync2h1	A	G	9: 7,081,084 (GRCm39)	Y2871H	probably damaging	Het
Fam221b	T	A	4: 43,665,537 (GRCm39)	H307L	probably damaging	Het
Foxn4	C	T	5: 114,401,193 (GRCm39)	D37N	probably damaging	Het
Gemin4	G	C	11: 76,101,876 (GRCm39)	P962A	probably damaging	Het
Gm9797	T	C	10: 11,485,069 (GRCm39)		noncoding transcript	Het
Golim4	A	T	3: 75,815,456 (GRCm39)	V116D	probably damaging	Het
Gper1	C	T	5: 139,412,477 (GRCm39)	P274L	probably damaging	Het
Gpr132	A	G	12: 112,816,023 (GRCm39)	S268P	probably damaging	Het
Gtpbp2	T	C	17: 46,472,128 (GRCm39)	M21T	probably benign	Het
Hivep1	C	T	13: 42,337,262 (GRCm39)	A2447V	possibly damaging	Het
Ift20	G	A	11: 78,430,860 (GRCm39)	E68K	probably damaging	Het
Insrr	G	A	3: 87,717,879 (GRCm39)		probably null	Het
Kcnh8	T	C	17: 53,200,961 (GRCm39)	V465A	probably damaging	Het
Kif5c	T	A	2: 49,648,817 (GRCm39)		probably benign	Het
Kmt2a	G	A	9: 44,730,972 (GRCm39)		probably benign	Het
Lhx6	G	T	2: 35,977,470 (GRCm39)	C327*	probably null	Het
Lifr	A	G	15: 7,211,337 (GRCm39)	D625G	possibly damaging	Het
Llgl1	T	C	11: 60,598,066 (GRCm39)	V370A	probably benign	Het
Lman1	A	T	18: 66,124,653 (GRCm39)	M362K	probably damaging	Het
Lmtk2	C	T	5: 144,111,806 (GRCm39)	T842I	possibly damaging	Het
Lpin3	T	A	2: 160,738,729 (GRCm39)	L227*	probably null	Het
Ltv1	C	G	10: 13,058,280 (GRCm39)		probably benign	Het
Magel2	A	T	7: 62,027,486 (GRCm39)	H130L	unknown	Het
Mettl17	A	T	14: 52,126,192 (GRCm39)		probably benign	Het
Mnx1	T	A	5: 29,679,187 (GRCm39)	S299C	unknown	Het
Mov10	A	T	3: 104,725,432 (GRCm39)	I59N	possibly damaging	Het
Myo7b	T	C	18: 32,127,950 (GRCm39)	I581V	probably benign	Het
Ncdn	T	A	4: 126,639,066 (GRCm39)		probably null	Het
Ndufa4	A	T	6: 11,900,574 (GRCm39)	V37E	probably benign	Het
Nhsl1	T	G	10: 18,400,412 (GRCm39)	L546R	probably benign	Het
Nop9	T	C	14: 55,988,599 (GRCm39)	L347P	probably damaging	Het
Nrp1	A	T	8: 129,224,997 (GRCm39)	E782D	probably damaging	Het
Ntrk3	G	A	7: 78,127,683 (GRCm39)		probably benign	Het
Or1j13	A	G	2: 36,370,059 (GRCm39)	S28P	possibly damaging	Het
Or2z8	A	G	8: 72,812,280 (GRCm39)	Y252C	probably damaging	Het
Or8g53	A	T	9: 39,683,791 (GRCm39)	C102S	probably benign	Het
Osbpl6	T	A	2: 76,416,558 (GRCm39)	I546K	probably damaging	Het
Pard6g	T	C	18: 80,160,523 (GRCm39)	V212A	probably damaging	Het
Pknox2	A	G	9: 36,820,980 (GRCm39)	V294A	probably damaging	Het
Plekha1	T	C	7: 130,493,983 (GRCm39)	V106A	probably benign	Het
Plekha6	C	A	1: 133,207,103 (GRCm39)		probably null	Het
Ptgdr	A	T	14: 45,096,036 (GRCm39)	Y225*	probably null	Het
Ptpn22	A	G	3: 103,781,368 (GRCm39)	I90V	probably damaging	Het
Pygb	C	T	2: 150,658,692 (GRCm39)	T372I	probably damaging	Het
Pzp	T	C	6: 128,468,124 (GRCm39)		probably null	Het
Qrich2	C	T	11: 116,332,275 (GRCm39)	G2307D	probably damaging	Het
Rfwd3	A	T	8: 112,024,034 (GRCm39)	V96E	probably benign	Het
Senp1	T	A	15: 97,973,848 (GRCm39)	T132S	probably benign	Het
Slc9a4	T	G	1: 40,646,901 (GRCm39)		probably null	Het
Slfn9	T	A	11: 82,872,133 (GRCm39)	I868F	probably damaging	Het
St3gal6	T	C	16: 58,296,234 (GRCm39)	D137G	probably damaging	Het
Synj1	G	T	16: 90,761,405 (GRCm39)	A687D	probably damaging	Het
Syt4	A	G	18: 31,576,496 (GRCm39)		probably benign	Het
Tacc1	A	T	8: 25,654,509 (GRCm39)	N271K	probably damaging	Het
Tdrd6	T	C	17: 43,935,724 (GRCm39)	T1775A	probably benign	Het
Tecpr1	T	A	5: 144,145,463 (GRCm39)	T595S	probably benign	Het
Tjp3	T	A	10: 81,113,888 (GRCm39)	M457L	possibly damaging	Het
Tmem200a	T	A	10: 25,869,825 (GRCm39)	H148L	probably damaging	Het
Trappc8	A	G	18: 20,967,997 (GRCm39)		probably null	Het
Txk	T	A	5: 72,853,922 (GRCm39)	T472S	probably damaging	Het
Ubr4	T	A	4: 139,151,256 (GRCm39)	M1897K	probably damaging	Het
Uggt2	A	G	14: 119,298,788 (GRCm39)	L391P	probably damaging	Het
Uncx	T	C	5: 139,533,302 (GRCm39)	S456P	probably benign	Het
Vps13b	A	G	15: 35,879,937 (GRCm39)	Y3004C	probably damaging	Het
Vps35l	T	C	7: 118,393,798 (GRCm39)	Y516H	probably damaging	Het
Zbtb46	C	T	2: 181,033,224 (GRCm39)	C479Y	probably damaging	Het
Zc3h7a	A	T	16: 10,968,469 (GRCm39)	Y503*	probably null	Het
Zdhhc13	T	A	7: 48,474,392 (GRCm39)	L548Q	possibly damaging	Het
Zfp236	T	C	18: 82,639,429 (GRCm39)	M1225V	probably benign	Het
Zfp280d	T	C	9: 72,215,287 (GRCm39)	F133L	probably damaging	Het
Zfp503	A	T	14: 22,035,588 (GRCm39)	C443S	possibly damaging	Het
Zfyve26	T	A	12: 79,315,208 (GRCm39)	I1423F	possibly damaging	Het

Other mutations in Cars1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01155:Cars1	APN	7	143,123,586 (GRCm39)	missense	probably benign	0.03
IGL02192:Cars1	APN	7	143,125,325 (GRCm39)	missense	probably damaging	1.00
IGL02645:Cars1	APN	7	143,111,646 (GRCm39)	missense	probably damaging	0.97
IGL02807:Cars1	APN	7	143,123,209 (GRCm39)	missense	possibly damaging	0.87
IGL02860:Cars1	APN	7	143,140,158 (GRCm39)	missense	probably damaging	1.00
IGL03005:Cars1	APN	7	143,112,906 (GRCm39)	missense	probably damaging	1.00
Vroom	UTSW	7	143,124,385 (GRCm39)	missense	probably damaging	1.00
Zoom	UTSW	7	143,146,362 (GRCm39)	nonsense	probably null
BB001:Cars1	UTSW	7	143,123,608 (GRCm39)	missense	possibly damaging	0.88
BB011:Cars1	UTSW	7	143,123,608 (GRCm39)	missense	possibly damaging	0.88
F5493:Cars1	UTSW	7	143,123,608 (GRCm39)	missense	probably damaging	1.00
R0358:Cars1	UTSW	7	143,142,219 (GRCm39)	splice site	probably benign
R0452:Cars1	UTSW	7	143,146,362 (GRCm39)	nonsense	probably null
R0717:Cars1	UTSW	7	143,138,492 (GRCm39)	missense	probably damaging	0.98
R0930:Cars1	UTSW	7	143,124,307 (GRCm39)	missense	probably damaging	1.00
R1069:Cars1	UTSW	7	143,123,844 (GRCm39)	missense	probably benign	0.40
R1184:Cars1	UTSW	7	143,140,876 (GRCm39)	missense	probably damaging	1.00
R1503:Cars1	UTSW	7	143,122,726 (GRCm39)	missense	probably benign	0.04
R1755:Cars1	UTSW	7	143,123,194 (GRCm39)	missense	probably damaging	1.00
R1762:Cars1	UTSW	7	143,146,211 (GRCm39)	missense	probably damaging	1.00
R1783:Cars1	UTSW	7	143,146,211 (GRCm39)	missense	probably damaging	1.00
R1828:Cars1	UTSW	7	143,130,385 (GRCm39)	missense	probably damaging	0.97
R2084:Cars1	UTSW	7	143,140,919 (GRCm39)	missense	probably benign	0.03
R2132:Cars1	UTSW	7	143,146,211 (GRCm39)	missense	probably damaging	1.00
R2133:Cars1	UTSW	7	143,146,211 (GRCm39)	missense	probably damaging	1.00
R2397:Cars1	UTSW	7	143,146,244 (GRCm39)	missense	possibly damaging	0.61
R4012:Cars1	UTSW	7	143,113,411 (GRCm39)	missense	possibly damaging	0.65
R4057:Cars1	UTSW	7	143,124,385 (GRCm39)	missense	probably damaging	1.00
R4082:Cars1	UTSW	7	143,123,234 (GRCm39)	missense	probably damaging	1.00
R4118:Cars1	UTSW	7	143,113,384 (GRCm39)	critical splice donor site	probably null
R4527:Cars1	UTSW	7	143,118,786 (GRCm39)	missense	probably benign	0.22
R4663:Cars1	UTSW	7	143,129,697 (GRCm39)	missense	probably damaging	1.00
R4758:Cars1	UTSW	7	143,125,304 (GRCm39)	missense	probably benign	0.01
R4820:Cars1	UTSW	7	143,124,301 (GRCm39)	missense	probably damaging	1.00
R4921:Cars1	UTSW	7	143,123,212 (GRCm39)	missense	probably damaging	1.00
R4923:Cars1	UTSW	7	143,123,587 (GRCm39)	missense	probably damaging	0.97
R5512:Cars1	UTSW	7	143,123,870 (GRCm39)	missense	possibly damaging	0.91
R6505:Cars1	UTSW	7	143,118,744 (GRCm39)	missense	probably damaging	1.00
R7125:Cars1	UTSW	7	143,138,510 (GRCm39)	missense	probably benign	0.01
R7641:Cars1	UTSW	7	143,140,840 (GRCm39)	critical splice donor site	probably null
R7674:Cars1	UTSW	7	143,140,840 (GRCm39)	critical splice donor site	probably null
R7812:Cars1	UTSW	7	143,123,784 (GRCm39)	missense	probably damaging	1.00
R7924:Cars1	UTSW	7	143,123,608 (GRCm39)	missense	possibly damaging	0.88
R8260:Cars1	UTSW	7	143,139,446 (GRCm39)	missense	probably benign
R8447:Cars1	UTSW	7	143,123,766 (GRCm39)	missense	possibly damaging	0.67
R8905:Cars1	UTSW	7	143,140,196 (GRCm39)	missense	probably damaging	1.00
R9200:Cars1	UTSW	7	143,129,654 (GRCm39)	critical splice donor site	probably null
R9240:Cars1	UTSW	7	143,138,533 (GRCm39)	missense	probably benign	0.01
R9441:Cars1	UTSW	7	143,123,185 (GRCm39)	missense	probably benign	0.00
R9566:Cars1	UTSW	7	143,113,384 (GRCm39)	critical splice donor site	probably null
R9603:Cars1	UTSW	7	143,112,929 (GRCm39)	missense	possibly damaging	0.83
X0021:Cars1	UTSW	7	143,130,321 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- CGCTGAGCTACATGTTGGTTAC -3'
(R):5'- TTCTGAGCATTAGTGACGAGG -3'

Sequencing Primer
(F):5'- GGTTACATGACTTTATCCTACCAGAC -3'
(R):5'- CATTAGTGACGAGGCAGCC -3'

Posted On

2014-06-23