Incidental Mutation 'R1806:Vmn2r3'
ID 203443
Institutional Source Beutler Lab
Gene Symbol Vmn2r3
Ensembl Gene ENSMUSG00000091572
Gene Name vomeronasal 2, receptor 3
Synonyms EG637004
MMRRC Submission 039835-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1806 (G1)
Quality Score 225
Status Validated
Chromosome 3
Chromosomal Location 64166225-64197130 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 64194810 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Arginine at position 8 (K8R)
Ref Sequence ENSEMBL: ENSMUSP00000126165 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000170244] [ENSMUST00000176328]
AlphaFold H3BJ88
Predicted Effect possibly damaging
Transcript: ENSMUST00000170244
AA Change: K8R

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000126165
Gene: ENSMUSG00000091572
AA Change: K8R

DomainStartEndE-ValueType
Pfam:ANF_receptor 64 479 4e-64 PFAM
Pfam:NCD3G 521 574 1.1e-17 PFAM
Pfam:7tm_3 605 842 2.9e-75 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000176328
AA Change: K36R

PolyPhen 2 Score 0.355 (Sensitivity: 0.90; Specificity: 0.89)
SMART Domains Protein: ENSMUSP00000134891
Gene: ENSMUSG00000091572
AA Change: K36R

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
Pfam:ANF_receptor 92 507 9.5e-66 PFAM
Pfam:NCD3G 549 602 8.8e-17 PFAM
Pfam:7tm_3 635 869 8.5e-48 PFAM
Meta Mutation Damage Score 0.1795 question?
Coding Region Coverage
  • 1x: 97.5%
  • 3x: 96.8%
  • 10x: 94.9%
  • 20x: 91.2%
Validation Efficiency 96% (77/80)
Allele List at MGI
Other mutations in this stock
Total: 70 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl2fm3 T C 3: 59,784,571 (GRCm39) L348P probably damaging Het
Adamts15 C A 9: 30,816,111 (GRCm39) C616F probably damaging Het
Adarb1 T C 10: 77,158,099 (GRCm39) N116S probably damaging Het
Add2 C T 6: 86,095,639 (GRCm39) S437L probably damaging Het
Adra1d T A 2: 131,388,069 (GRCm39) R495S probably benign Het
Agk C T 6: 40,364,429 (GRCm39) T309I probably damaging Het
Aqr T C 2: 113,992,133 (GRCm39) Y81C probably damaging Het
Bak1 G A 17: 27,240,242 (GRCm39) Q142* probably null Het
Bckdha A G 7: 25,330,845 (GRCm39) V307A probably damaging Het
Camk2n2 C A 16: 20,438,948 (GRCm39) G72V probably benign Het
Cd276 A T 9: 58,434,845 (GRCm39) probably benign Het
Cd2ap G A 17: 43,149,649 (GRCm39) Q122* probably null Het
Cdan1 T A 2: 120,561,907 (GRCm39) probably benign Het
Cdh3 T C 8: 107,263,547 (GRCm39) S156P probably benign Het
Chil4 T A 3: 106,117,959 (GRCm39) probably benign Het
Col11a1 C T 3: 113,951,791 (GRCm39) R1074C probably damaging Het
Depp1 G A 6: 116,628,683 (GRCm39) V9M possibly damaging Het
Fcrlb T C 1: 170,735,096 (GRCm39) T344A probably benign Het
Fras1 T A 5: 96,861,829 (GRCm39) probably benign Het
Fras1 G T 5: 96,912,835 (GRCm39) V3380F possibly damaging Het
Galnt9 A G 5: 110,767,119 (GRCm39) D530G possibly damaging Het
Gja10 A T 4: 32,601,135 (GRCm39) S416R probably benign Het
Gm10549 T A 18: 33,603,841 (GRCm39) V108E unknown Het
Hook3 A T 8: 26,558,687 (GRCm39) L59Q probably damaging Het
Hpf1 T A 8: 61,353,154 (GRCm39) D178E probably benign Het
Hsd17b7 T C 1: 169,788,698 (GRCm39) N173S possibly damaging Het
Hsph1 A G 5: 149,553,454 (GRCm39) F236L probably damaging Het
Kcnk12 G T 17: 88,053,537 (GRCm39) T375K probably benign Het
Klra3 A T 6: 130,304,033 (GRCm39) S220T probably damaging Het
Lhx1 A T 11: 84,414,967 (GRCm39) L12Q probably damaging Het
Lnx1 A G 5: 74,766,710 (GRCm39) L468P probably damaging Het
Ltbp3 T A 19: 5,803,970 (GRCm39) C827* probably null Het
Mical1 C T 10: 41,354,210 (GRCm39) A53V probably damaging Het
Mmp10 A T 9: 7,506,502 (GRCm39) H326L probably benign Het
Mpl A T 4: 118,300,729 (GRCm39) M600K possibly damaging Het
Muc5b T A 7: 141,419,230 (GRCm39) D4004E possibly damaging Het
Myo5b A T 18: 74,710,680 (GRCm39) H98L possibly damaging Het
Nbeal1 A G 1: 60,323,251 (GRCm39) T2110A probably damaging Het
Nedd4l C A 18: 65,345,862 (GRCm39) R825S probably damaging Het
Ntn4 C T 10: 93,543,215 (GRCm39) R314W probably damaging Het
Or4k35 A T 2: 111,100,622 (GRCm39) I30N possibly damaging Het
Or52e19 T A 7: 102,959,432 (GRCm39) L168Q probably damaging Het
Or8k41 A T 2: 86,313,483 (GRCm39) I201N probably damaging Het
Otog A T 7: 45,940,361 (GRCm39) probably null Het
Parp2 T A 14: 51,056,836 (GRCm39) L320H probably damaging Het
Poglut3 T C 9: 53,307,150 (GRCm39) Y365H probably damaging Het
Pola2 C T 19: 5,993,250 (GRCm39) probably null Het
Poln A T 5: 34,264,494 (GRCm39) probably benign Het
Pomt1 T A 2: 32,131,680 (GRCm39) V123E probably damaging Het
Prom2 T C 2: 127,374,802 (GRCm39) Y578C probably damaging Het
Prss23 T C 7: 89,159,599 (GRCm39) T157A probably damaging Het
Sdk1 T A 5: 141,598,950 (GRCm39) V205E probably damaging Het
Sdk1 A G 5: 142,147,681 (GRCm39) K1771R probably benign Het
Sidt1 A T 16: 44,102,234 (GRCm39) S309T possibly damaging Het
Sirpa T A 2: 129,457,432 (GRCm39) F169I probably damaging Het
Slc8a1 T C 17: 81,955,916 (GRCm39) N374S probably damaging Het
Sp110 C T 1: 85,523,831 (GRCm39) probably null Het
Stard9 A G 2: 120,509,934 (GRCm39) probably null Het
Synpr A G 14: 13,563,082 (GRCm38) N105S probably damaging Het
Tbc1d16 T C 11: 119,046,927 (GRCm39) Y440C probably damaging Het
Trabd A G 15: 88,969,824 (GRCm39) I313V possibly damaging Het
Trappc10 T C 10: 78,046,610 (GRCm39) R430G probably damaging Het
Trim50 A G 5: 135,387,743 (GRCm39) E145G probably benign Het
Uba2 A T 7: 33,862,624 (GRCm39) F105I probably damaging Het
Uba3 A G 6: 97,176,230 (GRCm39) V92A possibly damaging Het
Uhmk1 T C 1: 170,038,628 (GRCm39) K153R probably damaging Het
Xpot G T 10: 121,443,543 (GRCm39) probably benign Het
Zfp128 A G 7: 12,624,949 (GRCm39) Y439C probably benign Het
Zfy1 T A Y: 725,620 (GRCm39) H715L possibly damaging Het
Zmym1 A C 4: 126,941,872 (GRCm39) L839V probably damaging Het
Other mutations in Vmn2r3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01019:Vmn2r3 APN 3 64,167,304 (GRCm39) missense probably damaging 1.00
IGL01468:Vmn2r3 APN 3 64,182,382 (GRCm39) missense possibly damaging 0.57
IGL02032:Vmn2r3 APN 3 64,182,476 (GRCm39) missense possibly damaging 0.95
IGL02405:Vmn2r3 APN 3 64,178,620 (GRCm39) splice site probably benign
IGL02640:Vmn2r3 APN 3 64,194,816 (GRCm39) missense probably benign
IGL02719:Vmn2r3 APN 3 64,183,031 (GRCm39) missense probably damaging 1.00
IGL02746:Vmn2r3 APN 3 64,167,239 (GRCm39) missense possibly damaging 0.74
IGL02952:Vmn2r3 APN 3 64,186,256 (GRCm39) missense probably damaging 1.00
IGL03390:Vmn2r3 APN 3 64,182,767 (GRCm39) missense possibly damaging 0.55
G1citation:Vmn2r3 UTSW 3 64,194,876 (GRCm39) missense probably benign 0.30
R0023:Vmn2r3 UTSW 3 64,182,787 (GRCm39) missense probably damaging 0.99
R0433:Vmn2r3 UTSW 3 64,183,054 (GRCm39) missense possibly damaging 0.51
R0647:Vmn2r3 UTSW 3 64,183,046 (GRCm39) missense probably damaging 1.00
R1071:Vmn2r3 UTSW 3 64,182,697 (GRCm39) missense possibly damaging 0.79
R1536:Vmn2r3 UTSW 3 64,182,538 (GRCm39) missense probably damaging 1.00
R1806:Vmn2r3 UTSW 3 64,182,893 (GRCm39) missense probably benign 0.03
R1852:Vmn2r3 UTSW 3 64,166,815 (GRCm39) missense probably damaging 1.00
R1868:Vmn2r3 UTSW 3 64,166,537 (GRCm39) missense probably damaging 1.00
R2072:Vmn2r3 UTSW 3 64,182,493 (GRCm39) missense possibly damaging 0.87
R2240:Vmn2r3 UTSW 3 64,166,483 (GRCm39) missense probably benign 0.44
R2446:Vmn2r3 UTSW 3 64,182,733 (GRCm39) missense probably damaging 0.98
R4133:Vmn2r3 UTSW 3 64,183,138 (GRCm39) missense probably damaging 0.99
R4159:Vmn2r3 UTSW 3 64,194,850 (GRCm39) nonsense probably null
R4494:Vmn2r3 UTSW 3 64,182,692 (GRCm39) missense probably damaging 1.00
R4860:Vmn2r3 UTSW 3 64,183,022 (GRCm39) missense probably benign 0.00
R4895:Vmn2r3 UTSW 3 64,167,182 (GRCm39) missense probably benign 0.00
R4912:Vmn2r3 UTSW 3 64,166,618 (GRCm39) missense probably damaging 1.00
R5018:Vmn2r3 UTSW 3 64,178,774 (GRCm39) missense probably benign
R5033:Vmn2r3 UTSW 3 64,167,220 (GRCm39) missense probably benign 0.09
R5126:Vmn2r3 UTSW 3 64,166,740 (GRCm39) missense probably damaging 1.00
R5148:Vmn2r3 UTSW 3 64,186,247 (GRCm39) missense probably damaging 1.00
R5414:Vmn2r3 UTSW 3 64,166,978 (GRCm39) nonsense probably null
R5785:Vmn2r3 UTSW 3 64,166,444 (GRCm39) missense possibly damaging 0.89
R5905:Vmn2r3 UTSW 3 64,182,698 (GRCm39) missense probably benign 0.19
R5992:Vmn2r3 UTSW 3 64,167,068 (GRCm39) missense probably damaging 1.00
R6028:Vmn2r3 UTSW 3 64,182,698 (GRCm39) missense probably benign 0.19
R6331:Vmn2r3 UTSW 3 64,186,182 (GRCm39) missense probably damaging 1.00
R6378:Vmn2r3 UTSW 3 64,182,517 (GRCm39) missense probably damaging 1.00
R6775:Vmn2r3 UTSW 3 64,183,039 (GRCm39) missense possibly damaging 0.88
R6822:Vmn2r3 UTSW 3 64,194,876 (GRCm39) missense probably benign 0.30
R6826:Vmn2r3 UTSW 3 64,182,327 (GRCm39) nonsense probably null
R6886:Vmn2r3 UTSW 3 64,166,927 (GRCm39) missense probably damaging 1.00
R6971:Vmn2r3 UTSW 3 64,166,668 (GRCm39) missense probably damaging 0.99
R7154:Vmn2r3 UTSW 3 64,194,732 (GRCm39) missense probably benign 0.02
R7192:Vmn2r3 UTSW 3 64,167,364 (GRCm39) missense probably benign 0.24
R7282:Vmn2r3 UTSW 3 64,168,825 (GRCm39) missense possibly damaging 0.90
R7472:Vmn2r3 UTSW 3 64,182,953 (GRCm39) missense probably benign 0.00
R7563:Vmn2r3 UTSW 3 64,182,770 (GRCm39) missense possibly damaging 0.60
R7726:Vmn2r3 UTSW 3 64,182,939 (GRCm39) nonsense probably null
R7966:Vmn2r3 UTSW 3 64,186,235 (GRCm39) missense probably damaging 0.99
R8025:Vmn2r3 UTSW 3 64,182,871 (GRCm39) missense possibly damaging 0.91
R8050:Vmn2r3 UTSW 3 64,178,714 (GRCm39) missense probably damaging 0.99
R8300:Vmn2r3 UTSW 3 64,182,347 (GRCm39) missense probably benign 0.00
R8402:Vmn2r3 UTSW 3 64,178,617 (GRCm39) splice site probably benign
R8486:Vmn2r3 UTSW 3 64,186,370 (GRCm39) missense probably damaging 1.00
R8523:Vmn2r3 UTSW 3 64,182,311 (GRCm39) missense probably benign 0.03
R8678:Vmn2r3 UTSW 3 64,166,896 (GRCm39) missense possibly damaging 0.76
R8885:Vmn2r3 UTSW 3 64,182,383 (GRCm39) missense probably benign 0.00
R8886:Vmn2r3 UTSW 3 64,194,892 (GRCm39) missense possibly damaging 0.47
R8905:Vmn2r3 UTSW 3 64,166,695 (GRCm39) missense probably damaging 0.99
R8937:Vmn2r3 UTSW 3 64,166,673 (GRCm39) missense probably damaging 1.00
R8955:Vmn2r3 UTSW 3 64,168,803 (GRCm39) missense possibly damaging 0.56
R9172:Vmn2r3 UTSW 3 64,186,403 (GRCm39) missense possibly damaging 0.79
R9485:Vmn2r3 UTSW 3 64,183,046 (GRCm39) missense probably damaging 1.00
R9575:Vmn2r3 UTSW 3 64,178,735 (GRCm39) missense probably benign 0.01
R9618:Vmn2r3 UTSW 3 64,178,724 (GRCm39) missense probably damaging 0.98
X0022:Vmn2r3 UTSW 3 64,182,389 (GRCm39) missense probably damaging 1.00
X0022:Vmn2r3 UTSW 3 64,178,669 (GRCm39) missense possibly damaging 0.62
Predicted Primers PCR Primer
(F):5'- AGGCTCCAAGGTATCCACTC -3'
(R):5'- AGGTTAGGCACTCACACACTC -3'

Sequencing Primer
(F):5'- AAGGTATCCACTCTTTTCTGGC -3'
(R):5'- ACACTCTAACACTCTATTAAGGTGC -3'
Posted On 2014-06-23