Mutagenetix > Incidental Mutation

Incidental Mutation 'R1806:Xpot'

203480

Institutional Source

Beutler Lab

Gene Symbol

Xpot

Ensembl Gene

ENSMUSG00000034667

Gene Name

exportin, tRNA (nuclear export receptor for tRNAs)

Synonyms

EXPORTIN-T, 1110004L07Rik, C79645

MMRRC Submission

039835-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.949) question?

Stock #

R1806 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

121423285-121462237 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

G to T at 121443543 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000151722 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039810] [ENSMUST00000217865] [ENSMUST00000218004]

AlphaFold

Q9CRT8

Predicted Effect

probably benign
Transcript: ENSMUST00000039810

SMART Domains

Protein: ENSMUSP00000043488
Gene: ENSMUSG00000034667

Domain	Start	End	E-Value	Type
IBN_N	21	89	1.37e-3	SMART
Pfam:Xpo1	98	248	5.1e-42	PFAM
low complexity region	386	399	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000217865

Predicted Effect

probably benign
Transcript: ENSMUST00000218004

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000218973

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 97.5%
3x: 96.8%
10x: 94.9%
20x: 91.2%

Validation Efficiency

96% (77/80)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein belonging to the RAN-GTPase exportin family that mediates export of tRNA from the nucleus to the cytoplasm. Translocation of tRNA to the cytoplasm occurs once exportin has bound both tRNA and GTP-bound RAN. [provided by RefSeq, Jul 2008]

Allele List at MGI

All alleles(22) : Targeted, other(2) Gene trapped(20)

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2fm3	T	C	3: 59,784,571 (GRCm39)	L348P	probably damaging	Het
Adamts15	C	A	9: 30,816,111 (GRCm39)	C616F	probably damaging	Het
Adarb1	T	C	10: 77,158,099 (GRCm39)	N116S	probably damaging	Het
Add2	C	T	6: 86,095,639 (GRCm39)	S437L	probably damaging	Het
Adra1d	T	A	2: 131,388,069 (GRCm39)	R495S	probably benign	Het
Agk	C	T	6: 40,364,429 (GRCm39)	T309I	probably damaging	Het
Aqr	T	C	2: 113,992,133 (GRCm39)	Y81C	probably damaging	Het
Bak1	G	A	17: 27,240,242 (GRCm39)	Q142*	probably null	Het
Bckdha	A	G	7: 25,330,845 (GRCm39)	V307A	probably damaging	Het
Camk2n2	C	A	16: 20,438,948 (GRCm39)	G72V	probably benign	Het
Cd276	A	T	9: 58,434,845 (GRCm39)		probably benign	Het
Cd2ap	G	A	17: 43,149,649 (GRCm39)	Q122*	probably null	Het
Cdan1	T	A	2: 120,561,907 (GRCm39)		probably benign	Het
Cdh3	T	C	8: 107,263,547 (GRCm39)	S156P	probably benign	Het
Chil4	T	A	3: 106,117,959 (GRCm39)		probably benign	Het
Col11a1	C	T	3: 113,951,791 (GRCm39)	R1074C	probably damaging	Het
Depp1	G	A	6: 116,628,683 (GRCm39)	V9M	possibly damaging	Het
Fcrlb	T	C	1: 170,735,096 (GRCm39)	T344A	probably benign	Het
Fras1	T	A	5: 96,861,829 (GRCm39)		probably benign	Het
Fras1	G	T	5: 96,912,835 (GRCm39)	V3380F	possibly damaging	Het
Galnt9	A	G	5: 110,767,119 (GRCm39)	D530G	possibly damaging	Het
Gja10	A	T	4: 32,601,135 (GRCm39)	S416R	probably benign	Het
Gm10549	T	A	18: 33,603,841 (GRCm39)	V108E	unknown	Het
Hook3	A	T	8: 26,558,687 (GRCm39)	L59Q	probably damaging	Het
Hpf1	T	A	8: 61,353,154 (GRCm39)	D178E	probably benign	Het
Hsd17b7	T	C	1: 169,788,698 (GRCm39)	N173S	possibly damaging	Het
Hsph1	A	G	5: 149,553,454 (GRCm39)	F236L	probably damaging	Het
Kcnk12	G	T	17: 88,053,537 (GRCm39)	T375K	probably benign	Het
Klra3	A	T	6: 130,304,033 (GRCm39)	S220T	probably damaging	Het
Lhx1	A	T	11: 84,414,967 (GRCm39)	L12Q	probably damaging	Het
Lnx1	A	G	5: 74,766,710 (GRCm39)	L468P	probably damaging	Het
Ltbp3	T	A	19: 5,803,970 (GRCm39)	C827*	probably null	Het
Mical1	C	T	10: 41,354,210 (GRCm39)	A53V	probably damaging	Het
Mmp10	A	T	9: 7,506,502 (GRCm39)	H326L	probably benign	Het
Mpl	A	T	4: 118,300,729 (GRCm39)	M600K	possibly damaging	Het
Muc5b	T	A	7: 141,419,230 (GRCm39)	D4004E	possibly damaging	Het
Myo5b	A	T	18: 74,710,680 (GRCm39)	H98L	possibly damaging	Het
Nbeal1	A	G	1: 60,323,251 (GRCm39)	T2110A	probably damaging	Het
Nedd4l	C	A	18: 65,345,862 (GRCm39)	R825S	probably damaging	Het
Ntn4	C	T	10: 93,543,215 (GRCm39)	R314W	probably damaging	Het
Or4k35	A	T	2: 111,100,622 (GRCm39)	I30N	possibly damaging	Het
Or52e19	T	A	7: 102,959,432 (GRCm39)	L168Q	probably damaging	Het
Or8k41	A	T	2: 86,313,483 (GRCm39)	I201N	probably damaging	Het
Otog	A	T	7: 45,940,361 (GRCm39)		probably null	Het
Parp2	T	A	14: 51,056,836 (GRCm39)	L320H	probably damaging	Het
Poglut3	T	C	9: 53,307,150 (GRCm39)	Y365H	probably damaging	Het
Pola2	C	T	19: 5,993,250 (GRCm39)		probably null	Het
Poln	A	T	5: 34,264,494 (GRCm39)		probably benign	Het
Pomt1	T	A	2: 32,131,680 (GRCm39)	V123E	probably damaging	Het
Prom2	T	C	2: 127,374,802 (GRCm39)	Y578C	probably damaging	Het
Prss23	T	C	7: 89,159,599 (GRCm39)	T157A	probably damaging	Het
Sdk1	T	A	5: 141,598,950 (GRCm39)	V205E	probably damaging	Het
Sdk1	A	G	5: 142,147,681 (GRCm39)	K1771R	probably benign	Het
Sidt1	A	T	16: 44,102,234 (GRCm39)	S309T	possibly damaging	Het
Sirpa	T	A	2: 129,457,432 (GRCm39)	F169I	probably damaging	Het
Slc8a1	T	C	17: 81,955,916 (GRCm39)	N374S	probably damaging	Het
Sp110	C	T	1: 85,523,831 (GRCm39)		probably null	Het
Stard9	A	G	2: 120,509,934 (GRCm39)		probably null	Het
Synpr	A	G	14: 13,563,082 (GRCm38)	N105S	probably damaging	Het
Tbc1d16	T	C	11: 119,046,927 (GRCm39)	Y440C	probably damaging	Het
Trabd	A	G	15: 88,969,824 (GRCm39)	I313V	possibly damaging	Het
Trappc10	T	C	10: 78,046,610 (GRCm39)	R430G	probably damaging	Het
Trim50	A	G	5: 135,387,743 (GRCm39)	E145G	probably benign	Het
Uba2	A	T	7: 33,862,624 (GRCm39)	F105I	probably damaging	Het
Uba3	A	G	6: 97,176,230 (GRCm39)	V92A	possibly damaging	Het
Uhmk1	T	C	1: 170,038,628 (GRCm39)	K153R	probably damaging	Het
Vmn2r3	T	C	3: 64,194,810 (GRCm39)	K8R	possibly damaging	Het
Vmn2r3	T	A	3: 64,182,893 (GRCm39)	M269L	probably benign	Het
Zfp128	A	G	7: 12,624,949 (GRCm39)	Y439C	probably benign	Het
Zfy1	T	A	Y: 725,620 (GRCm39)	H715L	possibly damaging	Het
Zmym1	A	C	4: 126,941,872 (GRCm39)	L839V	probably damaging	Het

Other mutations in Xpot

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00340:Xpot	APN	10	121,441,549 (GRCm39)	missense	probably benign
IGL01286:Xpot	APN	10	121,438,243 (GRCm39)	missense	probably benign	0.03
IGL01364:Xpot	APN	10	121,440,399 (GRCm39)	missense	probably benign	0.08
IGL01370:Xpot	APN	10	121,440,399 (GRCm39)	missense	probably benign	0.08
IGL01516:Xpot	APN	10	121,426,127 (GRCm39)	splice site	probably null
IGL01530:Xpot	APN	10	121,447,433 (GRCm39)	missense	probably damaging	0.99
IGL02047:Xpot	APN	10	121,437,267 (GRCm39)	unclassified	probably benign
IGL02207:Xpot	APN	10	121,449,485 (GRCm39)	missense	probably damaging	1.00
IGL02340:Xpot	APN	10	121,451,109 (GRCm39)	missense	probably damaging	1.00
IGL02408:Xpot	APN	10	121,439,070 (GRCm39)	missense	probably damaging	1.00
IGL03150:Xpot	APN	10	121,445,091 (GRCm39)	missense	probably benign	0.00
IGL03210:Xpot	APN	10	121,451,132 (GRCm39)	splice site	probably benign
3-1:Xpot	UTSW	10	121,449,264 (GRCm39)	missense	probably benign	0.00
R0077:Xpot	UTSW	10	121,441,544 (GRCm39)	missense	probably benign	0.09
R1750:Xpot	UTSW	10	121,438,932 (GRCm39)	critical splice donor site	probably null
R1950:Xpot	UTSW	10	121,455,053 (GRCm39)	missense	probably benign
R2227:Xpot	UTSW	10	121,458,765 (GRCm39)	missense	probably damaging	0.98
R2304:Xpot	UTSW	10	121,447,488 (GRCm39)	missense	probably benign	0.02
R3914:Xpot	UTSW	10	121,440,443 (GRCm39)	missense	possibly damaging	0.72
R4784:Xpot	UTSW	10	121,450,968 (GRCm39)	splice site	probably null
R4884:Xpot	UTSW	10	121,442,713 (GRCm39)	missense	probably damaging	1.00
R4904:Xpot	UTSW	10	121,453,083 (GRCm39)	missense	probably benign	0.00
R5218:Xpot	UTSW	10	121,455,043 (GRCm39)	missense	probably damaging	0.99
R5361:Xpot	UTSW	10	121,436,765 (GRCm39)	missense	possibly damaging	0.71
R5651:Xpot	UTSW	10	121,440,454 (GRCm39)	missense	probably damaging	0.99
R5894:Xpot	UTSW	10	121,449,551 (GRCm39)	missense	probably damaging	1.00
R5915:Xpot	UTSW	10	121,450,998 (GRCm39)	missense	probably damaging	0.97
R6139:Xpot	UTSW	10	121,447,613 (GRCm39)	missense	probably benign	0.41
R6182:Xpot	UTSW	10	121,442,163 (GRCm39)	missense	probably damaging	1.00
R6896:Xpot	UTSW	10	121,449,390 (GRCm39)	critical splice donor site	probably null
R7024:Xpot	UTSW	10	121,438,304 (GRCm39)	missense	probably benign	0.35
R7146:Xpot	UTSW	10	121,442,678 (GRCm39)	missense	probably damaging	1.00
R7272:Xpot	UTSW	10	121,453,094 (GRCm39)	critical splice acceptor site	probably null
R7556:Xpot	UTSW	10	121,449,411 (GRCm39)	missense	probably benign	0.01
R7882:Xpot	UTSW	10	121,454,996 (GRCm39)	critical splice donor site	probably null
R7916:Xpot	UTSW	10	121,458,848 (GRCm39)	start gained	probably benign
R8087:Xpot	UTSW	10	121,437,232 (GRCm39)	missense	probably benign
R8224:Xpot	UTSW	10	121,443,513 (GRCm39)	missense	probably damaging	1.00
R8303:Xpot	UTSW	10	121,447,405 (GRCm39)	nonsense	probably null
R9036:Xpot	UTSW	10	121,447,580 (GRCm39)	missense	probably damaging	1.00
R9046:Xpot	UTSW	10	121,432,149 (GRCm39)	nonsense	probably null
R9393:Xpot	UTSW	10	121,445,600 (GRCm39)	critical splice donor site	probably null
R9716:Xpot	UTSW	10	121,447,392 (GRCm39)	missense	probably benign
Z1088:Xpot	UTSW	10	121,437,228 (GRCm39)	missense	probably damaging	0.99
Z1176:Xpot	UTSW	10	121,453,079 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGCTGTTTGCAGACCCGTG -3'
(R):5'- AGTGCTGCTGAGCCGTTATG -3'

Sequencing Primer
(F):5'- CGTGAGGAGAGGTGAACAC -3'
(R):5'- TGCGTGAATGGTTGAGATAGATAG -3'

Posted On

2014-06-23