Mutagenetix > Incidental Mutation

Incidental Mutation 'R1807:Depp1'

203528

Institutional Source

Beutler Lab

Gene Symbol

Depp1

Ensembl Gene

ENSMUSG00000048489

Gene Name

DEPP1 autophagy regulator

Synonyms

8430408G22Rik, Depp

MMRRC Submission

039836-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1807 (G1)

Quality Score

134

Status

Validated

Chromosome

Chromosomal Location

116627645-116629808 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 116628683 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Methionine at position 9 (V9M)

Ref Sequence

ENSEMBL: ENSMUSP00000145125 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035842] [ENSMUST00000067354] [ENSMUST00000178241] [ENSMUST00000203029] [ENSMUST00000204203] [ENSMUST00000204555] [ENSMUST00000204576]

AlphaFold

Q8K2F3

Predicted Effect

probably benign
Transcript: ENSMUST00000035842

SMART Domains

Protein: ENSMUSP00000048267
Gene: ENSMUSG00000042129

Domain	Start	End	E-Value	Type
low complexity region	6	16	N/A	INTRINSIC
low complexity region	46	57	N/A	INTRINSIC
RA	173	263	1.36e-15	SMART
Pfam:Nore1-SARAH	276	315	1.7e-15	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000067354
AA Change: V9M

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000070203
Gene: ENSMUSG00000048489
AA Change: V9M

Domain	Start	End	E-Value	Type
Pfam:DEPP	25	205	1.1e-71	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000178241
AA Change: V9M

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000136165
Gene: ENSMUSG00000048489
AA Change: V9M

Domain	Start	End	E-Value	Type
Pfam:DEPP	25	205	5.5e-80	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000203029

SMART Domains

Protein: ENSMUSP00000144786
Gene: ENSMUSG00000042129

Domain	Start	End	E-Value	Type
low complexity region	6	16	N/A	INTRINSIC
low complexity region	46	57	N/A	INTRINSIC
RA	173	263	8.7e-18	SMART
Pfam:Nore1-SARAH	276	303	1.6e-8	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203634

Predicted Effect

probably benign
Transcript: ENSMUST00000204203

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204313

Predicted Effect

possibly damaging
Transcript: ENSMUST00000204555
AA Change: V9M

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000145125
Gene: ENSMUSG00000048489
AA Change: V9M

Domain	Start	End	E-Value	Type
Pfam:DEPP	25	70	3e-22	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000204576

SMART Domains

Protein: ENSMUSP00000145394
Gene: ENSMUSG00000042129

Domain	Start	End	E-Value	Type
low complexity region	3	15	N/A	INTRINSIC
low complexity region	31	42	N/A	INTRINSIC

Meta Mutation Damage Score

0.1760

Coding Region Coverage

1x: 97.4%
3x: 96.7%
10x: 94.7%
20x: 90.7%

Validation Efficiency

97% (77/79)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The expression of this gene is induced by fasting as well as by progesterone. The protein encoded by this gene contains a t-synaptosome-associated protein receptor (SNARE) coiled-coil homology domain and a peroxisomal targeting signal. Production of the encoded protein leads to phosphorylation and activation of the transcription factor ELK1. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-in allele are viable and fertile and display normal heart and blood vessel development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310061I04Rik	C	T	17: 36,205,961 (GRCm39)	W27*	probably null	Het
4933430I17Rik	T	A	4: 62,460,993 (GRCm39)	Y289*	probably null	Het
A3galt2	A	G	4: 128,661,394 (GRCm39)	I348V	probably benign	Het
Abca13	A	G	11: 9,241,755 (GRCm39)	Y1206C	probably damaging	Het
Adar	T	C	3: 89,642,172 (GRCm39)	S18P	probably benign	Het
Akr1cl	T	C	1: 65,061,106 (GRCm39)	D139G	possibly damaging	Het
Aldh1b1	A	G	4: 45,802,873 (GRCm39)	Y137C	possibly damaging	Het
Arsa	T	C	15: 89,359,525 (GRCm39)	M86V	possibly damaging	Het
Atg9b	C	A	5: 24,592,055 (GRCm39)	R648L	probably damaging	Het
Atrn	A	G	2: 130,824,692 (GRCm39)	N1042S	possibly damaging	Het
Ccdc6	T	A	10: 70,010,989 (GRCm39)	D325E	possibly damaging	Het
Cdk12	T	C	11: 98,101,203 (GRCm39)	S354P	unknown	Het
Chst3	T	A	10: 60,022,130 (GRCm39)	Y239F	probably benign	Het
Cilp2	C	A	8: 70,334,844 (GRCm39)	R718L	probably damaging	Het
Col27a1	A	G	4: 63,249,586 (GRCm39)		probably benign	Het
Ctbp2	T	C	7: 132,616,137 (GRCm39)	N266S	probably benign	Het
Ctnnd2	T	C	15: 30,620,017 (GRCm39)	V123A	probably damaging	Het
Cyria	G	A	12: 12,411,505 (GRCm39)	R123Q	probably benign	Het
D7Ertd443e	T	A	7: 133,895,034 (GRCm39)	E552V	probably null	Het
Dcst1	T	A	3: 89,260,848 (GRCm39)	H516L	probably damaging	Het
Drd2	C	T	9: 49,316,367 (GRCm39)	L376F	probably damaging	Het
Edn1	A	G	13: 42,460,270 (GRCm39)	N175S	probably damaging	Het
Eipr1	G	T	12: 28,816,838 (GRCm39)	G65V	probably damaging	Het
Epha4	G	A	1: 77,351,541 (GRCm39)	P905S	probably benign	Het
Erbb2	T	C	11: 98,319,680 (GRCm39)	Y591H	probably damaging	Het
Fam135b	G	A	15: 71,335,761 (GRCm39)	R478C	probably benign	Het
Fat2	T	C	11: 55,180,085 (GRCm39)	T1419A	probably damaging	Het
Flnb	C	T	14: 7,934,645 (GRCm38)	T2239I	probably benign	Het
Gm7713	T	C	15: 59,866,320 (GRCm39)		noncoding transcript	Het
Hsf5	C	T	11: 87,548,168 (GRCm39)	P617L	probably benign	Het
Kcnk12	C	A	17: 88,053,468 (GRCm39)	R398L	probably benign	Het
Kif21b	T	A	1: 136,075,531 (GRCm39)	N219K	possibly damaging	Het
Kirrel1	C	T	3: 86,996,458 (GRCm39)	M380I	probably null	Het
Klra5	A	T	6: 129,876,383 (GRCm39)	F141L	probably benign	Het
Lmtk3	C	T	7: 45,442,702 (GRCm39)	P462S	probably benign	Het
Mast2	A	G	4: 116,167,938 (GRCm39)		probably benign	Het
Me1	T	A	9: 86,532,932 (GRCm39)	T197S	probably damaging	Het
Msr1	T	A	8: 40,072,948 (GRCm39)	Q267L	probably benign	Het
Nfic	T	C	10: 81,240,819 (GRCm39)	T328A	probably benign	Het
Nphp3	G	A	9: 103,897,940 (GRCm39)	D390N	probably benign	Het
Nr2e1	T	A	10: 42,458,905 (GRCm39)		probably null	Het
Nt5el	A	T	13: 105,218,744 (GRCm39)	Q26L	probably benign	Het
Or52e19b	T	A	7: 103,032,790 (GRCm39)	N140Y	probably benign	Het
Or5t9	T	A	2: 86,659,445 (GRCm39)	F116L	probably benign	Het
Pard6b	T	C	2: 167,929,332 (GRCm39)	L46P	probably damaging	Het
Prkaa1	T	A	15: 5,173,436 (GRCm39)	L20Q	probably damaging	Het
Rapgefl1	T	C	11: 98,736,815 (GRCm39)		probably null	Het
Recql5	T	C	11: 115,785,941 (GRCm39)	K611E	possibly damaging	Het
Rexo1	A	T	10: 80,378,413 (GRCm39)	I1180N	possibly damaging	Het
Rnf26rt	A	G	6: 76,474,397 (GRCm39)	V73A	probably benign	Het
Rph3a	T	C	5: 121,083,456 (GRCm39)	N605D	probably damaging	Het
Sema6a	A	G	18: 47,409,491 (GRCm39)	V592A	possibly damaging	Het
Skint11	A	T	4: 114,051,893 (GRCm39)	R80S	probably benign	Het
Smpdl3a	C	A	10: 57,677,118 (GRCm39)	P72H	probably damaging	Het
Sobp	T	G	10: 43,036,822 (GRCm39)	M39L	possibly damaging	Het
Sparcl1	T	A	5: 104,233,627 (GRCm39)	Y574F	probably damaging	Het
Spns3	C	T	11: 72,429,166 (GRCm39)	W206*	probably null	Het
Srf	A	G	17: 46,864,685 (GRCm39)	V190A	possibly damaging	Het
Stag1	T	G	9: 100,790,719 (GRCm39)	H742Q	probably benign	Het
Strn3	A	T	12: 51,673,986 (GRCm39)	S542T	probably benign	Het
Synpo2	T	C	3: 122,873,906 (GRCm39)	E1020G	possibly damaging	Het
Tcerg1l	T	A	7: 137,996,826 (GRCm39)	H137L	probably benign	Het
Tlr12	A	T	4: 128,511,229 (GRCm39)	D340E	probably benign	Het
Tmem130	T	A	5: 144,692,174 (GRCm39)	T77S	probably benign	Het
Tmem143	C	A	7: 45,547,037 (GRCm39)	R68S	probably damaging	Het
Tnrc6a	CTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT	CTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTT	7: 122,761,669 (GRCm39)		probably benign	Het
Trem1	G	T	17: 48,548,663 (GRCm39)	G67*	probably null	Het
Tsc1	A	G	2: 28,576,125 (GRCm39)	D978G	probably benign	Het
Txndc9	A	T	1: 38,033,096 (GRCm39)	H95Q	probably damaging	Het
Yju2b	C	T	8: 84,986,936 (GRCm39)	R187Q	probably damaging	Het
Zfp35	T	A	18: 24,136,986 (GRCm39)	N443K	probably benign	Het

Other mutations in Depp1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1424:Depp1	UTSW	6	116,628,966 (GRCm39)	missense	possibly damaging	0.71
R1433:Depp1	UTSW	6	116,629,223 (GRCm39)	missense	possibly damaging	0.95
R1806:Depp1	UTSW	6	116,628,683 (GRCm39)	missense	possibly damaging	0.96
R1872:Depp1	UTSW	6	116,628,683 (GRCm39)	missense	possibly damaging	0.96
R1879:Depp1	UTSW	6	116,628,683 (GRCm39)	missense	possibly damaging	0.96
R2060:Depp1	UTSW	6	116,628,683 (GRCm39)	missense	possibly damaging	0.96
R2207:Depp1	UTSW	6	116,628,683 (GRCm39)	missense	possibly damaging	0.96
R4074:Depp1	UTSW	6	116,629,029 (GRCm39)	missense	possibly damaging	0.71
R4075:Depp1	UTSW	6	116,629,029 (GRCm39)	missense	possibly damaging	0.71
R4724:Depp1	UTSW	6	116,629,096 (GRCm39)	nonsense	probably null
R5229:Depp1	UTSW	6	116,628,992 (GRCm39)	missense	possibly damaging	0.86
R6737:Depp1	UTSW	6	116,629,058 (GRCm39)	missense	possibly damaging	0.51
R7049:Depp1	UTSW	6	116,629,254 (GRCm39)	missense	probably damaging	0.98
R7092:Depp1	UTSW	6	116,628,749 (GRCm39)	missense	probably damaging	0.97
R8729:Depp1	UTSW	6	116,628,762 (GRCm39)	missense	probably damaging	1.00
R8747:Depp1	UTSW	6	116,629,122 (GRCm39)	missense	possibly damaging	0.83

Predicted Primers

PCR Primer
(F):5'- TCTCAGATCTGCAGGTTTCTTATTG -3'
(R):5'- CTGACGCAAAGAGAGCTGTC -3'

Sequencing Primer
(F):5'- AGATCTGCAGGTTTCTTATTGTTTTC -3'
(R):5'- TTCTCTCGAGTCCAGGCTGG -3'

Posted On

2014-06-23