Mutagenetix > Incidental Mutation

Incidental Mutation 'R1862:Vmn2r2'

203999

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r2

Ensembl Gene

ENSMUSG00000043897

Gene Name

vomeronasal 2, receptor 2

Synonyms

MMRRC Submission

039885-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.111) question?

Stock #

R1862 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

64116432-64140543 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 64134521 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 258 (N258D)

Ref Sequence

ENSEMBL: ENSMUSP00000135110 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077958] [ENSMUST00000177151]

AlphaFold

L7N2E9

Predicted Effect

possibly damaging
Transcript: ENSMUST00000077958
AA Change: N174D

PolyPhen 2 Score 0.788 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000077109
Gene: ENSMUSG00000043897
AA Change: N174D

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	1	416	4.5e-80	PFAM
Pfam:NCD3G	458	511	8.3e-18	PFAM
Pfam:7tm_3	542	779	1.3e-75	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000177151
AA Change: N258D

PolyPhen 2 Score 0.788 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000135110
Gene: ENSMUSG00000043897
AA Change: N258D

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:ANF_receptor	83	500	1.6e-84	PFAM
Pfam:NCD3G	542	595	2.6e-17	PFAM
Pfam:7tm_3	628	862	1.9e-47	PFAM

Coding Region Coverage

1x: 97.5%
3x: 96.8%
10x: 94.9%
20x: 90.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acox2	T	A	14: 8,241,416	E565D	probably benign	Het
Adam30	A	T	3: 98,162,113	K421*	probably null	Het
Atp6v1b1	A	G	6: 83,749,852		probably null	Het
Cacna1a	A	T	8: 84,415,930	I96F	possibly damaging	Het
Card10	G	A	15: 78,780,514	R747W	probably damaging	Het
Cdh8	T	A	8: 99,190,394	D363V	probably damaging	Het
Cecr2	T	C	6: 120,757,941	Y685H	probably damaging	Het
Cmklr1	T	C	5: 113,614,407	T178A	probably damaging	Het
Col16a1	G	A	4: 130,092,782		probably null	Het
Col4a1	C	T	8: 11,226,439		probably benign	Het
Coro2a	T	A	4: 46,548,797	I166F	possibly damaging	Het
Cry2	T	C	2: 92,424,566	H148R	probably damaging	Het
Crygd	T	C	1: 65,061,974	Y154C	probably benign	Het
Cubn	T	C	2: 13,308,561	Y3066C	probably damaging	Het
Defb15	C	T	8: 21,929,986	E42K	possibly damaging	Het
Dnah12	A	G	14: 26,697,398	D147G	probably benign	Het
Dnah12	A	T	14: 26,709,257	Y340F	probably benign	Het
Dot1l	G	T	10: 80,783,539	R193L	probably damaging	Het
Dupd1	A	G	14: 21,686,689	V115A	probably benign	Het
Esd	A	C	14: 74,742,074	Y119S	probably damaging	Het
Esp36	A	G	17: 38,419,439		probably benign	Het
Etfbkmt	T	A	6: 149,144,151	M1K	probably null	Het
Exph5	A	G	9: 53,376,248	H1543R	probably benign	Het
Fam92a	C	T	4: 12,155,717	V306I	possibly damaging	Het
Fbxo16	A	G	14: 65,270,803	T23A	probably damaging	Het
Gm11492	A	G	11: 87,567,235	H145R	possibly damaging	Het
Gm6614	T	C	6: 142,003,423	M76V	possibly damaging	Het
Gorasp2	C	A	2: 70,679,464	H136Q	probably damaging	Het
Hdc	T	A	2: 126,597,933	I367F	probably benign	Het
Hmcn1	C	T	1: 150,638,900	V3574M	probably benign	Het
Ilvbl	A	G	10: 78,584,124	D592G	probably benign	Het
Inmt	G	A	6: 55,174,883	A34V	probably damaging	Het
Ints9	A	C	14: 65,026,413	H378P	probably benign	Het
Kcnh7	T	A	2: 62,787,754	I464L	possibly damaging	Het
Kcnt2	T	A	1: 140,425,330	V259D	probably damaging	Het
Lipo1	A	G	19: 33,784,692	F135S	probably damaging	Het
Lrba	T	C	3: 86,773,203		probably null	Het
Mapk1	T	A	16: 17,026,429	S22T	probably benign	Het
Mbd3l2	T	C	9: 18,444,921	S181P	possibly damaging	Het
Mgat5	C	T	1: 127,459,969	P554L	probably damaging	Het
Mki67	T	C	7: 135,699,361	T1315A	probably benign	Het
Mprip	C	T	11: 59,758,221	T917M	possibly damaging	Het
Mroh3	T	A	1: 136,185,988	I688F	probably benign	Het
Myo1d	A	T	11: 80,663,048	Y536N	probably damaging	Het
Neb	C	T	2: 52,162,187		probably null	Het
Noc2l	A	G	4: 156,237,708	R161G	probably benign	Het
Nup54	T	A	5: 92,419,567	I375L	possibly damaging	Het
Nup93	T	C	8: 94,306,102	F539L	probably damaging	Het
Olfr138	A	G	17: 38,275,344	E191G	probably damaging	Het
Olfr417	T	A	1: 174,369,452	H178Q	probably damaging	Het
Olfr480	A	C	7: 108,066,725	Y24*	probably null	Het
Olfr874	T	A	9: 37,746,968	M278K	probably benign	Het
Panx1	A	T	9: 15,007,428	D378E	probably damaging	Het
Papss1	T	A	3: 131,583,184	V170D	possibly damaging	Het
Pcnx	T	C	12: 81,918,732	S558P	probably damaging	Het
Pde3a	T	A	6: 141,250,353	I255N	probably damaging	Het
Pde3a	G	T	6: 141,487,513	A757S	probably damaging	Het
Pdzph1	A	G	17: 58,922,583	Y1027H	probably damaging	Het
Pkhd1	G	T	1: 20,551,020	R805S	probably benign	Het
Polr1a	G	A	6: 71,909,203	G14D	probably damaging	Het
Prg4	T	A	1: 150,460,669	D60V	probably damaging	Het
Ptprc	T	C	1: 138,112,227	S311G	probably benign	Het
Rapgefl1	G	A	11: 98,842,209	R205K	probably benign	Het
Rcan2	A	T	17: 44,037,089		probably null	Het
Rock1	A	G	18: 10,079,207	I1087T	probably damaging	Het
Sectm1b	A	G	11: 121,054,942	I191T	possibly damaging	Het
Setd1b	T	C	5: 123,147,613	S241P	unknown	Het
Srpk2	T	C	5: 23,524,150	K497R	probably benign	Het
Sspo	T	C	6: 48,491,006	S4296P	probably damaging	Het
Syne4	T	C	7: 30,316,883	V168A	probably benign	Het
Tank	T	C	2: 61,649,912	F264S	probably damaging	Het
Ticrr	T	C	7: 79,695,207	S1607P	probably damaging	Het
Trim30a	A	G	7: 104,411,198	V457A	probably damaging	Het
Trim43b	T	A	9: 89,085,571	K336N	probably damaging	Het
Trim47	T	C	11: 116,106,137	Q598R	probably damaging	Het
Tspan12	T	C	6: 21,851,023	N18S	probably damaging	Het
Ubap2	A	G	4: 41,221,607	S231P	probably benign	Het
Vit	A	G	17: 78,622,746	D380G	probably damaging	Het
Vmn2r52	C	T	7: 10,173,406	C131Y	possibly damaging	Het
Zadh2	T	C	18: 84,095,318	V373A	possibly damaging	Het
Zfp58	A	T	13: 67,491,188	F395I	probably damaging	Het
Zfp940	C	A	7: 29,845,010	G491C	probably damaging	Het

Other mutations in Vmn2r2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00326:Vmn2r2	APN	3	64133898	splice site	probably benign
IGL00980:Vmn2r2	APN	3	64117180	missense	probably benign	0.11
IGL01389:Vmn2r2	APN	3	64117009	missense	probably damaging	0.97
IGL01804:Vmn2r2	APN	3	64134256	missense	possibly damaging	0.91
IGL02750:Vmn2r2	APN	3	64117402	missense	probably damaging	1.00
IGL02829:Vmn2r2	APN	3	64118751	splice site	probably benign
IGL03036:Vmn2r2	APN	3	64116900	missense	probably benign	0.01
IGL03174:Vmn2r2	APN	3	64117123	nonsense	probably null
PIT4151001:Vmn2r2	UTSW	3	64116913	missense	possibly damaging	0.67
R0029:Vmn2r2	UTSW	3	64116944	missense	probably benign	0.00
R0310:Vmn2r2	UTSW	3	64134618	missense	probably damaging	1.00
R0357:Vmn2r2	UTSW	3	64133899	splice site	probably null
R0637:Vmn2r2	UTSW	3	64126578	missense	probably benign	0.00
R1626:Vmn2r2	UTSW	3	64134500	missense	possibly damaging	0.61
R1662:Vmn2r2	UTSW	3	64117130	missense	probably benign	0.00
R1710:Vmn2r2	UTSW	3	64117399	missense	probably benign	0.19
R1797:Vmn2r2	UTSW	3	64134707	missense	probably benign	0.00
R1971:Vmn2r2	UTSW	3	64126700	missense	probably damaging	1.00
R2051:Vmn2r2	UTSW	3	64117345	missense	possibly damaging	0.77
R2099:Vmn2r2	UTSW	3	64117053	missense	probably damaging	1.00
R2275:Vmn2r2	UTSW	3	64116509	missense	probably benign	0.00
R3078:Vmn2r2	UTSW	3	64134632	missense	probably benign	0.22
R3418:Vmn2r2	UTSW	3	64116899	missense	probably benign	0.00
R3419:Vmn2r2	UTSW	3	64116899	missense	probably benign	0.00
R3959:Vmn2r2	UTSW	3	64140526	missense	probably benign
R4230:Vmn2r2	UTSW	3	64134491	missense	probably benign	0.00
R4258:Vmn2r2	UTSW	3	64134697	missense	probably damaging	1.00
R4810:Vmn2r2	UTSW	3	64137462	missense	probably damaging	1.00
R4822:Vmn2r2	UTSW	3	64134539	missense	probably damaging	0.99
R4919:Vmn2r2	UTSW	3	64117157	missense	possibly damaging	0.56
R4925:Vmn2r2	UTSW	3	64137471	start codon destroyed	probably null	0.03
R4954:Vmn2r2	UTSW	3	64140484	missense	probably benign	0.00
R5071:Vmn2r2	UTSW	3	64116900	missense	probably benign	0.01
R5315:Vmn2r2	UTSW	3	64116956	missense	probably benign	0.37
R5450:Vmn2r2	UTSW	3	64126590	missense	probably benign
R5577:Vmn2r2	UTSW	3	64116995	missense	probably benign	0.00
R5595:Vmn2r2	UTSW	3	64126615	missense	possibly damaging	0.74
R5727:Vmn2r2	UTSW	3	64117187	missense	probably benign	0.41
R5810:Vmn2r2	UTSW	3	64117394	missense	probably damaging	1.00
R5919:Vmn2r2	UTSW	3	64137302	missense	probably benign	0.39
R6052:Vmn2r2	UTSW	3	64117361	missense	possibly damaging	0.56
R6084:Vmn2r2	UTSW	3	64117046	missense	probably benign	0.01
R6299:Vmn2r2	UTSW	3	64116653	nonsense	probably null
R6762:Vmn2r2	UTSW	3	64134449	missense	probably damaging	1.00
R6858:Vmn2r2	UTSW	3	64137494	missense	probably damaging	1.00
R6889:Vmn2r2	UTSW	3	64117267	missense	probably damaging	0.99
R6990:Vmn2r2	UTSW	3	64117187	missense	probably benign	0.02
R7195:Vmn2r2	UTSW	3	64116479	missense	probably benign	0.01
R7269:Vmn2r2	UTSW	3	64126577	missense	probably benign	0.32
R7699:Vmn2r2	UTSW	3	64117115	missense	possibly damaging	0.69
R7717:Vmn2r2	UTSW	3	64134598	missense	possibly damaging	0.95
R7798:Vmn2r2	UTSW	3	64134097	missense	possibly damaging	0.60
R7914:Vmn2r2	UTSW	3	64134105	missense	probably benign	0.20
R7974:Vmn2r2	UTSW	3	64117387	missense	probably damaging	0.99
R8394:Vmn2r2	UTSW	3	64137437	missense	probably damaging	1.00
R8478:Vmn2r2	UTSW	3	64116836	missense	possibly damaging	0.87
R8731:Vmn2r2	UTSW	3	64116983	missense	probably benign	0.16
R9035:Vmn2r2	UTSW	3	64116751	missense	probably damaging	1.00
R9182:Vmn2r2	UTSW	3	64137381	missense	probably damaging	1.00
R9225:Vmn2r2	UTSW	3	64126600	missense	probably benign	0.00
R9266:Vmn2r2	UTSW	3	64116636	missense	probably damaging	0.98
R9427:Vmn2r2	UTSW	3	64134524	missense	probably damaging	1.00
R9659:Vmn2r2	UTSW	3	64134521	missense	possibly damaging	0.79
R9666:Vmn2r2	UTSW	3	64116449	missense	probably benign	0.08
R9771:Vmn2r2	UTSW	3	64134658	missense	possibly damaging	0.88
R9788:Vmn2r2	UTSW	3	64134521	missense	possibly damaging	0.79
X0024:Vmn2r2	UTSW	3	64137286	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- CAGGCTTTGCAATGAGAGCAG -3'
(R):5'- AGTGACACATTCCAGTTTCCATC -3'

Sequencing Primer
(F):5'- CAGAGGTAATCCAGGCTTCACTG -3'
(R):5'- CCCAGTGATAAATTTCAGTCTGAGGG -3'

Posted On

2014-06-23