Mutagenetix > Incidental Mutation

Incidental Mutation 'R1862:Coro2a'

204005

Institutional Source

Beutler Lab

Gene Symbol

Coro2a

Ensembl Gene

ENSMUSG00000028337

Gene Name

coronin, actin binding protein 2A

Synonyms

9030208C03Rik, IR10, coronin 4

MMRRC Submission

039885-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.075) question?

Stock #

R1862 (G1)

Quality Score

200

Status

Not validated

Chromosome

Chromosomal Location

46536937-46601929 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 46548797 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 166 (I166F)

Ref Sequence

ENSEMBL: ENSMUSP00000103386 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030021] [ENSMUST00000107756] [ENSMUST00000107757]

AlphaFold

Q8C0P5

Predicted Effect

possibly damaging
Transcript: ENSMUST00000030021
AA Change: I147F

PolyPhen 2 Score 0.934 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000030021
Gene: ENSMUSG00000028337
AA Change: I147F

Domain	Start	End	E-Value	Type
DUF1899	5	69	3.93e-33	SMART
WD40	68	111	2.04e-5	SMART
WD40	121	161	1.58e-2	SMART
WD40	169	208	2.55e-6	SMART
DUF1900	261	397	9.15e-84	SMART
coiled coil region	488	521	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107756
AA Change: I147F

PolyPhen 2 Score 0.934 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000103385
Gene: ENSMUSG00000028337
AA Change: I147F

Domain	Start	End	E-Value	Type
DUF1899	5	69	3.93e-33	SMART
WD40	68	111	2.04e-5	SMART
WD40	121	161	1.58e-2	SMART
WD40	169	208	2.55e-6	SMART
DUF1900	261	397	9.15e-84	SMART
coiled coil region	488	521	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000107757
AA Change: I166F

PolyPhen 2 Score 0.934 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000103386
Gene: ENSMUSG00000028337
AA Change: I166F

Domain	Start	End	E-Value	Type
DUF1899	24	88	3.93e-33	SMART
WD40	87	130	2.04e-5	SMART
WD40	140	180	1.58e-2	SMART
WD40	188	227	2.55e-6	SMART
DUF1900	280	416	9.15e-84	SMART
coiled coil region	507	540	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139179

Coding Region Coverage

1x: 97.5%
3x: 96.8%
10x: 94.9%
20x: 90.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. This protein contains 5 WD repeats, and has a structural similarity with actin-binding proteins: the D. discoideum coronin and the human p57 protein, suggesting that this protein may also be an actin-binding protein that regulates cell motility. Alternative splicing of this gene generates 2 transcript variants. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acox2	T	A	14: 8,241,416 (GRCm38)	E565D	probably benign	Het
Adam30	A	T	3: 98,069,429 (GRCm39)	K421*	probably null	Het
Atp6v1b1	A	G	6: 83,726,834 (GRCm39)		probably null	Het
Cacna1a	A	T	8: 85,142,559 (GRCm39)	I96F	possibly damaging	Het
Card10	G	A	15: 78,664,714 (GRCm39)	R747W	probably damaging	Het
Cdh8	T	A	8: 99,917,026 (GRCm39)	D363V	probably damaging	Het
Cecr2	T	C	6: 120,734,902 (GRCm39)	Y685H	probably damaging	Het
Cibar1	C	T	4: 12,155,717 (GRCm39)	V306I	possibly damaging	Het
Cmklr1	T	C	5: 113,752,468 (GRCm39)	T178A	probably damaging	Het
Col16a1	G	A	4: 129,986,575 (GRCm39)		probably null	Het
Col4a1	C	T	8: 11,276,439 (GRCm39)		probably benign	Het
Cry2	T	C	2: 92,254,911 (GRCm39)	H148R	probably damaging	Het
Crygd	T	C	1: 65,101,133 (GRCm39)	Y154C	probably benign	Het
Cubn	T	C	2: 13,313,372 (GRCm39)	Y3066C	probably damaging	Het
Defb15	C	T	8: 22,420,002 (GRCm39)	E42K	possibly damaging	Het
Dnah12	A	G	14: 26,418,553 (GRCm39)	D147G	probably benign	Het
Dnah12	A	T	14: 26,430,412 (GRCm39)	Y340F	probably benign	Het
Dot1l	G	T	10: 80,619,373 (GRCm39)	R193L	probably damaging	Het
Dusp29	A	G	14: 21,736,757 (GRCm39)	V115A	probably benign	Het
Esd	A	C	14: 74,979,514 (GRCm39)	Y119S	probably damaging	Het
Esp36	A	G	17: 38,730,330 (GRCm39)		probably benign	Het
Etfbkmt	T	A	6: 149,045,649 (GRCm39)	M1K	probably null	Het
Exph5	A	G	9: 53,287,548 (GRCm39)	H1543R	probably benign	Het
Fbxo16	A	G	14: 65,508,252 (GRCm39)	T23A	probably damaging	Het
Gorasp2	C	A	2: 70,509,808 (GRCm39)	H136Q	probably damaging	Het
Hdc	T	A	2: 126,439,853 (GRCm39)	I367F	probably benign	Het
Hmcn1	C	T	1: 150,514,651 (GRCm39)	V3574M	probably benign	Het
Ilvbl	A	G	10: 78,419,958 (GRCm39)	D592G	probably benign	Het
Inmt	G	A	6: 55,151,868 (GRCm39)	A34V	probably damaging	Het
Ints9	A	C	14: 65,263,862 (GRCm39)	H378P	probably benign	Het
Kcnh7	T	A	2: 62,618,098 (GRCm39)	I464L	possibly damaging	Het
Kcnt2	T	A	1: 140,353,068 (GRCm39)	V259D	probably damaging	Het
Lipo3	A	G	19: 33,762,092 (GRCm39)	F135S	probably damaging	Het
Lrba	T	C	3: 86,680,510 (GRCm39)		probably null	Het
Mapk1	T	A	16: 16,844,293 (GRCm39)	S22T	probably benign	Het
Mbd3l2	T	C	9: 18,356,217 (GRCm39)	S181P	possibly damaging	Het
Mgat5	C	T	1: 127,387,706 (GRCm39)	P554L	probably damaging	Het
Mki67	T	C	7: 135,301,090 (GRCm39)	T1315A	probably benign	Het
Mprip	C	T	11: 59,649,047 (GRCm39)	T917M	possibly damaging	Het
Mroh3	T	A	1: 136,113,726 (GRCm39)	I688F	probably benign	Het
Myo1d	A	T	11: 80,553,874 (GRCm39)	Y536N	probably damaging	Het
Neb	C	T	2: 52,052,199 (GRCm39)		probably null	Het
Noc2l	A	G	4: 156,322,165 (GRCm39)	R161G	probably benign	Het
Nup54	T	A	5: 92,567,426 (GRCm39)	I375L	possibly damaging	Het
Nup93	T	C	8: 95,032,730 (GRCm39)	F539L	probably damaging	Het
Or10x1	T	A	1: 174,197,018 (GRCm39)	H178Q	probably damaging	Het
Or2n1e	A	G	17: 38,586,235 (GRCm39)	E191G	probably damaging	Het
Or5p57	A	C	7: 107,665,932 (GRCm39)	Y24*	probably null	Het
Or8b12	T	A	9: 37,658,264 (GRCm39)	M278K	probably benign	Het
Panx1	A	T	9: 14,918,724 (GRCm39)	D378E	probably damaging	Het
Papss1	T	A	3: 131,288,945 (GRCm39)	V170D	possibly damaging	Het
Pcnx1	T	C	12: 81,965,506 (GRCm39)	S558P	probably damaging	Het
Pde3a	G	T	6: 141,433,239 (GRCm39)	A757S	probably damaging	Het
Pde3a	T	A	6: 141,196,079 (GRCm39)	I255N	probably damaging	Het
Pdzph1	A	G	17: 59,229,578 (GRCm39)	Y1027H	probably damaging	Het
Pkhd1	G	T	1: 20,621,244 (GRCm39)	R805S	probably benign	Het
Polr1a	G	A	6: 71,886,187 (GRCm39)	G14D	probably damaging	Het
Prg4	T	A	1: 150,336,420 (GRCm39)	D60V	probably damaging	Het
Ptgr3	T	C	18: 84,113,443 (GRCm39)	V373A	possibly damaging	Het
Ptprc	T	C	1: 138,039,965 (GRCm39)	S311G	probably benign	Het
Rapgefl1	G	A	11: 98,733,035 (GRCm39)	R205K	probably benign	Het
Rcan2	A	T	17: 44,347,980 (GRCm39)		probably null	Het
Rock1	A	G	18: 10,079,207 (GRCm39)	I1087T	probably damaging	Het
Sectm1b	A	G	11: 120,945,768 (GRCm39)	I191T	possibly damaging	Het
Septin4	A	G	11: 87,458,061 (GRCm39)	H145R	possibly damaging	Het
Setd1b	T	C	5: 123,285,676 (GRCm39)	S241P	unknown	Het
Slco1a8	T	C	6: 141,949,149 (GRCm39)	M76V	possibly damaging	Het
Srpk2	T	C	5: 23,729,148 (GRCm39)	K497R	probably benign	Het
Sspo	T	C	6: 48,467,940 (GRCm39)	S4296P	probably damaging	Het
Syne4	T	C	7: 30,016,308 (GRCm39)	V168A	probably benign	Het
Tank	T	C	2: 61,480,256 (GRCm39)	F264S	probably damaging	Het
Ticrr	T	C	7: 79,344,955 (GRCm39)	S1607P	probably damaging	Het
Trim30a	A	G	7: 104,060,405 (GRCm39)	V457A	probably damaging	Het
Trim43b	T	A	9: 88,967,624 (GRCm39)	K336N	probably damaging	Het
Trim47	T	C	11: 115,996,963 (GRCm39)	Q598R	probably damaging	Het
Tspan12	T	C	6: 21,851,022 (GRCm39)	N18S	probably damaging	Het
Ubap2	A	G	4: 41,221,607 (GRCm39)	S231P	probably benign	Het
Vit	A	G	17: 78,930,175 (GRCm39)	D380G	probably damaging	Het
Vmn2r2	T	C	3: 64,041,942 (GRCm39)	N258D	possibly damaging	Het
Vmn2r52	C	T	7: 9,907,333 (GRCm39)	C131Y	possibly damaging	Het
Zfp58	A	T	13: 67,639,307 (GRCm39)	F395I	probably damaging	Het
Zfp940	C	A	7: 29,544,435 (GRCm39)	G491C	probably damaging	Het

Other mutations in Coro2a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00478:Coro2a	APN	4	46,540,455 (GRCm39)	missense	probably benign	0.06
IGL03093:Coro2a	APN	4	46,544,158 (GRCm39)	missense	possibly damaging	0.93
lonewolf	UTSW	4	46,542,255 (GRCm39)	missense	probably damaging	1.00
R1562:Coro2a	UTSW	4	46,548,917 (GRCm39)	missense	probably benign	0.02
R1931:Coro2a	UTSW	4	46,539,138 (GRCm39)	makesense	probably null
R4385:Coro2a	UTSW	4	46,541,961 (GRCm39)	missense	possibly damaging	0.93
R5171:Coro2a	UTSW	4	46,542,372 (GRCm39)	intron	probably benign
R5243:Coro2a	UTSW	4	46,545,620 (GRCm39)	missense	probably damaging	1.00
R5393:Coro2a	UTSW	4	46,542,255 (GRCm39)	missense	probably damaging	1.00
R5785:Coro2a	UTSW	4	46,564,691 (GRCm39)	missense	probably benign	0.03
R6014:Coro2a	UTSW	4	46,542,261 (GRCm39)	missense	probably damaging	1.00
R6184:Coro2a	UTSW	4	46,540,504 (GRCm39)	missense	probably benign
R6264:Coro2a	UTSW	4	46,562,912 (GRCm39)	missense	probably damaging	1.00
R6601:Coro2a	UTSW	4	46,543,421 (GRCm39)	nonsense	probably null
R6732:Coro2a	UTSW	4	46,551,374 (GRCm39)	missense	probably damaging	0.99
R6760:Coro2a	UTSW	4	46,540,572 (GRCm39)	missense	probably benign
R7499:Coro2a	UTSW	4	46,539,188 (GRCm39)	missense	probably benign	0.01
R7516:Coro2a	UTSW	4	46,562,992 (GRCm39)	missense	probably benign	0.12
R7567:Coro2a	UTSW	4	46,546,674 (GRCm39)	missense	probably damaging	0.99
R7816:Coro2a	UTSW	4	46,546,809 (GRCm39)	missense	probably benign	0.01
R8008:Coro2a	UTSW	4	46,551,349 (GRCm39)	missense	probably damaging	1.00
R8236:Coro2a	UTSW	4	46,548,796 (GRCm39)	missense	possibly damaging	0.93
R8513:Coro2a	UTSW	4	46,544,117 (GRCm39)	frame shift	probably null
R8515:Coro2a	UTSW	4	46,544,117 (GRCm39)	frame shift	probably null
R9024:Coro2a	UTSW	4	46,542,323 (GRCm39)	missense	probably benign	0.34
R9113:Coro2a	UTSW	4	46,563,047 (GRCm39)	missense
R9445:Coro2a	UTSW	4	46,540,558 (GRCm39)	missense	probably benign	0.00
R9534:Coro2a	UTSW	4	46,548,884 (GRCm39)	missense	probably benign	0.00
RF012:Coro2a	UTSW	4	46,542,336 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TCACTGCAGCCGACTAAAG -3'
(R):5'- ATAGCAACTGCCCGGAGATG -3'

Sequencing Primer
(F):5'- AGCCGACTAAAGTGTGTCCTGATC -3'
(R):5'- GATGCTCCCAGCTCACACTC -3'

Posted On

2014-06-23