Incidental Mutation 'R0112:Dner'
ID 20486
Institutional Source Beutler Lab
Gene Symbol Dner
Ensembl Gene ENSMUSG00000036766
Gene Name delta/notch-like EGF repeat containing
Synonyms BET, A930026D19Rik
MMRRC Submission 038398-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0112 (G1)
Quality Score 225
Status Validated (trace)
Chromosome 1
Chromosomal Location 84347560-84673942 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 84560774 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Serine at position 23 (A23S)
Ref Sequence ENSEMBL: ENSMUSP00000140662 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000049126] [ENSMUST00000185606] [ENSMUST00000191546]
AlphaFold Q8JZM4
Predicted Effect probably benign
Transcript: ENSMUST00000049126
AA Change: A211S

PolyPhen 2 Score 0.037 (Sensitivity: 0.94; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000042927
Gene: ENSMUSG00000036766
AA Change: A211S

DomainStartEndE-ValueType
signal peptide 1 34 N/A INTRINSIC
EGF 47 92 9.85e-5 SMART
EGF 97 133 2.33e-6 SMART
EGF 306 348 1.8e1 SMART
EGF 352 390 5e-6 SMART
EGF_CA 392 428 8.97e-8 SMART
EGF 433 466 3.54e-6 SMART
EGF 471 503 4.66e-6 SMART
EGF_CA 505 541 1.61e-9 SMART
EGF 546 579 9.7e-4 SMART
EGF_CA 581 617 4.52e-13 SMART
transmembrane domain 639 661 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000185606
AA Change: A124S

PolyPhen 2 Score 0.037 (Sensitivity: 0.94; Specificity: 0.82)
SMART Domains Protein: ENSMUSP00000140986
Gene: ENSMUSG00000036766
AA Change: A124S

DomainStartEndE-ValueType
EGF 10 46 1.1e-8 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000191306
Predicted Effect probably benign
Transcript: ENSMUST00000191546
AA Change: A23S

PolyPhen 2 Score 0.062 (Sensitivity: 0.94; Specificity: 0.84)
Meta Mutation Damage Score 0.0728 question?
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.1%
  • 10x: 96.0%
  • 20x: 91.8%
Validation Efficiency 100% (86/86)
MGI Phenotype PHENOTYPE: Homozygous null mice display delayed cerebellar development, abnormal Bergmann glial cells, abnormal Purkinje cell innervation, and impaired coordination. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930568D16Rik T A 2: 35,244,815 (GRCm39) Y179F probably benign Het
Abcd4 A G 12: 84,659,673 (GRCm39) probably benign Het
Abhd12b C T 12: 70,227,791 (GRCm39) T191M probably benign Het
Adcy5 A G 16: 34,976,548 (GRCm39) E27G possibly damaging Het
Adgb G A 10: 10,282,902 (GRCm39) probably benign Het
Afdn T C 17: 14,104,899 (GRCm39) S1186P probably damaging Het
Atf6b G T 17: 34,870,600 (GRCm39) R351L probably damaging Het
Axin2 T C 11: 108,830,223 (GRCm39) S348P possibly damaging Het
Bfsp1 A C 2: 143,669,563 (GRCm39) probably null Het
Brd1 A G 15: 88,614,586 (GRCm39) V103A probably benign Het
Ccdc13 C A 9: 121,642,547 (GRCm39) K392N probably damaging Het
Ccdc18 A G 5: 108,321,627 (GRCm39) K577R probably damaging Het
Csmd2 G T 4: 128,389,822 (GRCm39) G2186C probably damaging Het
Cyp2j5 A T 4: 96,517,760 (GRCm39) M484K probably benign Het
Defb3 T A 8: 19,343,423 (GRCm39) L12Q probably null Het
Defb7 G T 8: 19,545,186 (GRCm39) probably null Het
Dhx35 T A 2: 158,682,540 (GRCm39) M491K probably damaging Het
Dnah17 T C 11: 117,965,260 (GRCm39) S2261G possibly damaging Het
Dnah5 A C 15: 28,263,825 (GRCm39) E853D probably benign Het
Dock5 A C 14: 68,057,090 (GRCm39) S539A probably benign Het
Dsg2 T A 18: 20,716,099 (GRCm39) F317I probably benign Het
Enox1 A T 14: 77,936,638 (GRCm39) I539F possibly damaging Het
Eogt G A 6: 97,112,245 (GRCm39) probably benign Het
Fbxo22 A G 9: 55,130,630 (GRCm39) T300A probably benign Het
Fes T C 7: 80,033,753 (GRCm39) D166G probably damaging Het
Fn1 A G 1: 71,648,812 (GRCm39) S1366P probably damaging Het
Fndc3a A T 14: 72,777,935 (GRCm39) probably benign Het
Foxh1 T C 15: 76,553,210 (GRCm39) H168R probably benign Het
Galnt14 T G 17: 73,881,979 (GRCm39) probably benign Het
Gdf6 A G 4: 9,844,482 (GRCm39) D2G probably damaging Het
Gp6 C A 7: 4,373,183 (GRCm39) A247S probably benign Het
Gp6 G C 7: 4,374,626 (GRCm39) P232A probably benign Het
Grin2c A G 11: 115,141,960 (GRCm39) Y820H probably damaging Het
Gtf2h4 T C 17: 35,981,340 (GRCm39) T198A possibly damaging Het
Helz T C 11: 107,563,774 (GRCm39) probably benign Het
Htr1d A G 4: 136,170,311 (GRCm39) E180G probably benign Het
Igsf10 A G 3: 59,233,429 (GRCm39) V1768A probably benign Het
Ints10 A T 8: 69,279,954 (GRCm39) T694S probably damaging Het
Krt81 C A 15: 101,361,508 (GRCm39) R24L possibly damaging Het
Lipc T A 9: 70,727,709 (GRCm39) Y131F probably damaging Het
Litaf G T 16: 10,784,375 (GRCm39) T45K probably damaging Het
Lmo7 A T 14: 102,124,629 (GRCm39) R363* probably null Het
Lrrc37a A T 11: 103,391,739 (GRCm39) Y1229N probably benign Het
Man2a2 C T 7: 80,008,024 (GRCm39) A943T probably damaging Het
Mtor A G 4: 148,565,380 (GRCm39) Y1030C probably damaging Het
Naalad2 G T 9: 18,262,743 (GRCm39) Y384* probably null Het
Nat2 C T 8: 67,954,378 (GRCm39) Q163* probably null Het
Nell2 A G 15: 95,329,562 (GRCm39) probably benign Het
Nphp3 C T 9: 103,914,547 (GRCm39) H102Y possibly damaging Het
Olr1 T C 6: 129,465,869 (GRCm39) S46G possibly damaging Het
Or2y13 A T 11: 49,414,961 (GRCm39) H137L possibly damaging Het
Or52x1 A T 7: 104,852,866 (GRCm39) M228K probably benign Het
Or5b94 C T 19: 12,652,121 (GRCm39) T184I probably benign Het
Parg C A 14: 31,924,390 (GRCm39) A63E probably damaging Het
Pik3cg A G 12: 32,245,714 (GRCm39) probably benign Het
Ripk4 A G 16: 97,544,761 (GRCm39) C629R probably benign Het
Rnf145 A G 11: 44,454,978 (GRCm39) T620A probably benign Het
Rskr T C 11: 78,182,507 (GRCm39) probably benign Het
Samd9l T G 6: 3,376,031 (GRCm39) D410A possibly damaging Het
Serpinb9f A T 13: 33,511,934 (GRCm39) probably benign Het
Slc19a1 T C 10: 76,877,999 (GRCm39) I178T probably benign Het
Slco1b2 A T 6: 141,616,837 (GRCm39) Y390F probably benign Het
Speg A G 1: 75,361,676 (GRCm39) E230G possibly damaging Het
Tbc1d9 C A 8: 83,991,466 (GRCm39) probably benign Het
Tmem131l G A 3: 83,847,894 (GRCm39) Q324* probably null Het
Trf A G 9: 103,104,155 (GRCm39) probably benign Het
Trp53 T G 11: 69,479,505 (GRCm39) Y202D probably damaging Het
Trpv1 T A 11: 73,144,098 (GRCm39) M618K probably damaging Het
Trrap C A 5: 144,759,571 (GRCm39) Y2250* probably null Het
Ttc3 A G 16: 94,186,181 (GRCm39) probably benign Het
Ubtfl1 T G 9: 18,321,083 (GRCm39) S204A probably benign Het
Uck2 A T 1: 167,055,340 (GRCm39) Y203N probably damaging Het
Utrn A T 10: 12,562,209 (GRCm39) L1280* probably null Het
Vmn1r178 A T 7: 23,593,609 (GRCm39) H146L possibly damaging Het
Vmn2r100 C A 17: 19,742,382 (GRCm39) P252Q possibly damaging Het
Vmn2r108 T C 17: 20,691,897 (GRCm39) M209V probably benign Het
Vmn2r9 G A 5: 108,990,991 (GRCm39) T790I probably damaging Het
Vmn2r94 C A 17: 18,463,866 (GRCm39) R808L probably benign Het
Zbtb7c A T 18: 76,269,962 (GRCm39) S17C probably damaging Het
Zfp811 C T 17: 33,016,738 (GRCm39) R434Q probably damaging Het
Zkscan6 A T 11: 65,705,689 (GRCm39) probably benign Het
Other mutations in Dner
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01434:Dner APN 1 84,361,731 (GRCm39) missense probably benign 0.13
IGL02251:Dner APN 1 84,361,747 (GRCm39) missense probably damaging 1.00
IGL02904:Dner APN 1 84,512,665 (GRCm39) missense probably damaging 0.96
IGL03063:Dner APN 1 84,563,059 (GRCm39) missense possibly damaging 0.90
R0013:Dner UTSW 1 84,472,614 (GRCm39) splice site probably benign
R0196:Dner UTSW 1 84,348,553 (GRCm39) missense probably damaging 1.00
R0282:Dner UTSW 1 84,423,101 (GRCm39) splice site probably benign
R0282:Dner UTSW 1 84,383,686 (GRCm39) missense probably damaging 1.00
R0942:Dner UTSW 1 84,563,030 (GRCm39) splice site probably benign
R1143:Dner UTSW 1 84,423,185 (GRCm39) missense probably damaging 1.00
R1483:Dner UTSW 1 84,563,270 (GRCm39) utr 5 prime probably benign
R1585:Dner UTSW 1 84,563,177 (GRCm39) missense probably benign 0.05
R1636:Dner UTSW 1 84,563,051 (GRCm39) missense possibly damaging 0.89
R1739:Dner UTSW 1 84,348,505 (GRCm39) missense probably damaging 0.99
R1756:Dner UTSW 1 84,423,311 (GRCm39) missense probably damaging 0.98
R1960:Dner UTSW 1 84,423,177 (GRCm39) missense probably damaging 0.98
R2061:Dner UTSW 1 84,383,710 (GRCm39) missense probably damaging 1.00
R2157:Dner UTSW 1 84,361,659 (GRCm39) missense possibly damaging 0.88
R2265:Dner UTSW 1 84,563,270 (GRCm39) utr 5 prime probably benign
R2382:Dner UTSW 1 84,348,544 (GRCm39) missense probably damaging 1.00
R2507:Dner UTSW 1 84,560,801 (GRCm39) missense probably damaging 1.00
R3053:Dner UTSW 1 84,361,747 (GRCm39) missense probably damaging 1.00
R3917:Dner UTSW 1 84,563,270 (GRCm39) utr 5 prime probably benign
R4530:Dner UTSW 1 84,560,736 (GRCm39) missense probably damaging 1.00
R4552:Dner UTSW 1 84,361,578 (GRCm39) missense probably damaging 1.00
R4579:Dner UTSW 1 84,361,537 (GRCm39) missense probably damaging 0.97
R4593:Dner UTSW 1 84,673,449 (GRCm39) start codon destroyed probably null
R4711:Dner UTSW 1 84,361,618 (GRCm39) missense possibly damaging 0.75
R5102:Dner UTSW 1 84,383,691 (GRCm39) missense probably damaging 1.00
R5314:Dner UTSW 1 84,558,460 (GRCm39) missense probably damaging 1.00
R5370:Dner UTSW 1 84,563,270 (GRCm39) utr 5 prime probably benign
R6000:Dner UTSW 1 84,361,650 (GRCm39) missense possibly damaging 0.80
R6644:Dner UTSW 1 84,373,428 (GRCm39) missense probably damaging 1.00
R6764:Dner UTSW 1 84,472,502 (GRCm39) missense probably damaging 1.00
R6948:Dner UTSW 1 84,383,738 (GRCm39) missense probably damaging 1.00
R6991:Dner UTSW 1 84,454,123 (GRCm39) nonsense probably null
R7056:Dner UTSW 1 84,558,457 (GRCm39) missense possibly damaging 0.75
R7410:Dner UTSW 1 84,563,332 (GRCm39) missense probably damaging 1.00
R7490:Dner UTSW 1 84,563,270 (GRCm39) utr 5 prime probably benign
R7869:Dner UTSW 1 84,361,602 (GRCm39) missense probably benign 0.10
R7938:Dner UTSW 1 84,673,218 (GRCm39) missense possibly damaging 0.62
R8253:Dner UTSW 1 84,512,598 (GRCm39) missense probably damaging 1.00
R9016:Dner UTSW 1 84,673,226 (GRCm39) missense probably benign 0.05
R9170:Dner UTSW 1 84,512,647 (GRCm39) missense probably damaging 1.00
R9254:Dner UTSW 1 84,673,193 (GRCm39) missense probably benign 0.03
R9763:Dner UTSW 1 84,361,656 (GRCm39) missense possibly damaging 0.75
Z1176:Dner UTSW 1 84,361,701 (GRCm39) missense possibly damaging 0.88
Z1177:Dner UTSW 1 84,423,154 (GRCm39) missense probably damaging 0.99
Z1177:Dner UTSW 1 84,423,151 (GRCm39) missense probably damaging 1.00
Z1177:Dner UTSW 1 84,383,710 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- CCTTCAAGATCCCCATTGGATTGGC -3'
(R):5'- GTCCTGACTGAAGCACCCATTCATC -3'

Sequencing Primer
(F):5'- GCCAGTGACACACCAGATG -3'
(R):5'- TTGCAGACAGCTCTCTGAAAAG -3'
Posted On 2013-04-11