Mutagenetix > Incidental Mutation

Incidental Mutation 'R1832:Cyp2a4'

204868

Institutional Source

Beutler Lab

Gene Symbol

Cyp2a4

Ensembl Gene

ENSMUSG00000074254

Gene Name

cytochrome P450, family 2, subfamily a, polypeptide 4

Synonyms

Cyp15a1, D7Ucla4, testosterone 15alpha-hydroxylase

MMRRC Submission

039859-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.092) question?

Stock #

R1832 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

26006617-26014513 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 26011635 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Aspartic acid at position 285 (E285D)

Ref Sequence

ENSEMBL: ENSMUSP00000096254 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000098657]

AlphaFold

P15392

Predicted Effect

probably damaging
Transcript: ENSMUST00000098657
AA Change: E285D

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000096254
Gene: ENSMUSG00000074254
AA Change: E285D

Domain	Start	End	E-Value	Type
transmembrane domain	5	24	N/A	INTRINSIC
Pfam:p450	34	491	8.9e-151	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000206226

Meta Mutation Damage Score

0.3001

Coding Region Coverage

1x: 97.4%
3x: 96.7%
10x: 94.6%
20x: 90.7%

Validation Efficiency

100% (82/82)

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700003H04Rik	T	A	3: 124,350,509 (GRCm39)	D143V	unknown	Het
Abca8a	A	T	11: 109,962,277 (GRCm39)	N525K	probably damaging	Het
Abhd12	T	A	2: 150,690,338 (GRCm39)	D119V	probably damaging	Het
Adamts20	A	T	15: 94,184,225 (GRCm39)	M1526K	probably benign	Het
Ankdd1a	A	T	9: 65,411,771 (GRCm39)		probably null	Het
Ankrd1	C	T	19: 36,092,378 (GRCm39)	C283Y	possibly damaging	Het
Arfgef1	G	C	1: 10,275,115 (GRCm39)	I312M	probably benign	Het
Bhlhe22	G	A	3: 18,109,139 (GRCm39)	C63Y	probably damaging	Het
Bmp8a	A	T	4: 123,218,885 (GRCm39)		probably benign	Het
Ccdc148	A	T	2: 58,891,911 (GRCm39)	S235T	probably damaging	Het
Ccdc88b	G	A	19: 6,830,900 (GRCm39)	Q681*	probably null	Het
Cep104	T	A	4: 154,087,003 (GRCm39)	V842E	probably benign	Het
Chac2	T	C	11: 30,927,568 (GRCm39)	N117S	probably benign	Het
Cimap3	C	T	3: 105,921,912 (GRCm39)	E4K	possibly damaging	Het
Cldn8	T	A	16: 88,359,746 (GRCm39)	I60F	probably benign	Het
Col16a1	G	A	4: 129,970,850 (GRCm39)		probably null	Het
Col4a1	A	G	8: 11,264,644 (GRCm39)		probably benign	Het
Cyp4a31	G	A	4: 115,426,928 (GRCm39)	G176D	probably benign	Het
Dmxl2	A	C	9: 54,368,233 (GRCm39)	Y246D	probably damaging	Het
Dync1h1	A	G	12: 110,580,493 (GRCm39)	K118R	probably damaging	Het
Dync2i1	T	A	12: 116,171,363 (GRCm39)	S958C	probably damaging	Het
Eif3h	T	C	15: 51,728,832 (GRCm39)	T8A	possibly damaging	Het
Fbh1	G	T	2: 11,772,211 (GRCm39)	L157I	probably benign	Het
Fbxo40	C	A	16: 36,789,218 (GRCm39)	G631*	probably null	Het
Gabrb1	T	A	5: 72,279,281 (GRCm39)		probably null	Het
Galc	A	G	12: 98,200,499 (GRCm39)		probably null	Het
Garin2	G	A	12: 78,762,280 (GRCm39)		probably benign	Het
H2-Q7	C	A	17: 35,658,675 (GRCm39)	S104R	probably benign	Het
Igkv13-54-1	A	T	6: 69,594,277 (GRCm39)	M31L	probably benign	Het
Lamc2	C	T	1: 153,041,933 (GRCm39)	R67Q	possibly damaging	Het
Lcn10	A	G	2: 25,575,151 (GRCm39)	D173G	probably damaging	Het
Llgl2	G	T	11: 115,741,926 (GRCm39)	R656L	probably damaging	Het
Lonrf2	G	A	1: 38,852,357 (GRCm39)	P165S	probably benign	Het
Lrrc66	G	A	5: 73,764,769 (GRCm39)	S758L	possibly damaging	Het
Ly6d	T	C	15: 74,634,615 (GRCm39)	K46E	probably damaging	Het
Map3k5	A	G	10: 19,975,306 (GRCm39)	N88D	probably damaging	Het
Mertk	A	T	2: 128,604,132 (GRCm39)	E422V	probably benign	Het
Mixl1	A	G	1: 180,522,296 (GRCm39)	V195A	probably benign	Het
Nmnat3	T	C	9: 98,281,521 (GRCm39)	V41A	probably damaging	Het
Or1r1	A	T	11: 73,875,319 (GRCm39)	N38K	probably damaging	Het
Or2a7	A	G	6: 43,151,834 (GRCm39)	R305G	probably benign	Het
Or7g34	A	G	9: 19,478,492 (GRCm39)	Y63H	possibly damaging	Het
Pappa2	T	A	1: 158,684,886 (GRCm39)	E751V	probably damaging	Het
Pcsk2	A	G	2: 143,635,189 (GRCm39)	S355G	probably damaging	Het
Pdzd2	A	G	15: 12,390,134 (GRCm39)	V821A	probably damaging	Het
Plxna4	A	C	6: 32,174,761 (GRCm39)	D1109E	probably benign	Het
Ppard	A	G	17: 28,516,084 (GRCm39)	M103V	probably benign	Het
Pramel51	T	C	12: 88,145,218 (GRCm39)	E44G	possibly damaging	Het
Ralgapa1	T	C	12: 55,804,752 (GRCm39)	T515A	probably benign	Het
Rin2	A	G	2: 145,703,091 (GRCm39)	I596V	possibly damaging	Het
Rnls	A	G	19: 33,145,895 (GRCm39)	S75P	possibly damaging	Het
Rsph10b	A	T	5: 143,903,997 (GRCm39)	Y236F	possibly damaging	Het
Runx1t1	C	T	4: 13,835,628 (GRCm39)		probably benign	Het
Sardh	A	G	2: 27,125,581 (GRCm39)	V311A	possibly damaging	Het
Sbno2	G	T	10: 79,896,439 (GRCm39)	Y889*	probably null	Het
Sclt1	A	G	3: 41,681,546 (GRCm39)	V91A	probably damaging	Het
Sema4g	T	A	19: 44,987,456 (GRCm39)	V534E	probably benign	Het
Shoc1	T	G	4: 59,066,441 (GRCm39)	I768L	probably benign	Het
Slc10a1	G	A	12: 81,000,446 (GRCm39)	S351F	probably benign	Het
Slc19a3	A	T	1: 83,000,468 (GRCm39)	V183E	probably damaging	Het
Slc25a12	A	G	2: 71,164,054 (GRCm39)	Y74H	possibly damaging	Het
Slc6a19	T	A	13: 73,841,069 (GRCm39)	I114L	probably benign	Het
Smpd2	A	T	10: 41,364,232 (GRCm39)	C189S	probably benign	Het
Spon1	T	A	7: 113,616,018 (GRCm39)	V295D	probably benign	Het
Tet3	A	G	6: 83,380,627 (GRCm39)	S514P	probably benign	Het
Tnk1	T	C	11: 69,747,754 (GRCm39)	I49M	probably damaging	Het
Trim80	A	G	11: 115,337,619 (GRCm39)	T431A	probably benign	Het
Vgf	A	T	5: 137,060,153 (GRCm39)	Q105L	possibly damaging	Het
Vmn1r37	G	T	6: 66,708,780 (GRCm39)	L135F	probably benign	Het
Vps37d	C	T	5: 135,102,594 (GRCm39)	A128T	possibly damaging	Het
Wwp1	T	C	4: 19,650,197 (GRCm39)	D323G	probably benign	Het
Zfp456	T	A	13: 67,515,482 (GRCm39)	I75L	probably benign	Het
Zfp990	A	G	4: 145,264,780 (GRCm39)	I593V	possibly damaging	Het

Other mutations in Cyp2a4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01533:Cyp2a4	APN	7	26,007,969 (GRCm39)	missense	probably damaging	1.00
IGL01609:Cyp2a4	APN	7	26,008,088 (GRCm39)	critical splice donor site	probably null
IGL01959:Cyp2a4	APN	7	26,007,133 (GRCm39)	missense	probably damaging	1.00
IGL02282:Cyp2a4	APN	7	26,008,472 (GRCm39)	missense	probably benign	0.01
IGL03053:Cyp2a4	APN	7	26,012,975 (GRCm39)	splice site	probably benign
IGL03168:Cyp2a4	APN	7	26,012,975 (GRCm39)	splice site	probably benign
R0393:Cyp2a4	UTSW	7	26,012,293 (GRCm39)	missense	possibly damaging	0.67
R0453:Cyp2a4	UTSW	7	26,012,258 (GRCm39)	missense	probably benign	0.22
R0825:Cyp2a4	UTSW	7	26,012,341 (GRCm39)	missense	probably benign	0.07
R0948:Cyp2a4	UTSW	7	26,010,213 (GRCm39)	missense	probably damaging	1.00
R1215:Cyp2a4	UTSW	7	26,014,226 (GRCm39)	missense	possibly damaging	0.75
R1222:Cyp2a4	UTSW	7	26,008,013 (GRCm39)	missense	possibly damaging	0.70
R1374:Cyp2a4	UTSW	7	26,012,348 (GRCm39)	missense	probably damaging	0.99
R1473:Cyp2a4	UTSW	7	26,014,188 (GRCm39)	missense	probably benign
R1580:Cyp2a4	UTSW	7	26,007,076 (GRCm39)	missense	possibly damaging	0.91
R1768:Cyp2a4	UTSW	7	26,012,197 (GRCm39)	missense	possibly damaging	0.94
R1911:Cyp2a4	UTSW	7	26,008,399 (GRCm39)	missense	possibly damaging	0.85
R2080:Cyp2a4	UTSW	7	26,007,962 (GRCm39)	missense	possibly damaging	0.96
R2086:Cyp2a4	UTSW	7	26,011,733 (GRCm39)	missense	probably damaging	1.00
R2259:Cyp2a4	UTSW	7	26,008,460 (GRCm39)	missense	probably damaging	0.99
R2877:Cyp2a4	UTSW	7	26,011,612 (GRCm39)	missense	possibly damaging	0.95
R2878:Cyp2a4	UTSW	7	26,011,612 (GRCm39)	missense	possibly damaging	0.95
R3732:Cyp2a4	UTSW	7	26,012,252 (GRCm39)	missense	probably damaging	1.00
R3732:Cyp2a4	UTSW	7	26,012,252 (GRCm39)	missense	probably damaging	1.00
R3733:Cyp2a4	UTSW	7	26,012,252 (GRCm39)	missense	probably damaging	1.00
R3734:Cyp2a4	UTSW	7	26,012,252 (GRCm39)	missense	probably damaging	1.00
R3741:Cyp2a4	UTSW	7	26,007,969 (GRCm39)	missense	probably damaging	1.00
R4079:Cyp2a4	UTSW	7	26,006,791 (GRCm39)	missense	probably benign	0.22
R4297:Cyp2a4	UTSW	7	26,006,793 (GRCm39)	missense	probably damaging	0.96
R4785:Cyp2a4	UTSW	7	26,012,300 (GRCm39)	missense	probably damaging	1.00
R4998:Cyp2a4	UTSW	7	26,006,786 (GRCm39)	missense	probably damaging	1.00
R5297:Cyp2a4	UTSW	7	26,011,629 (GRCm39)	missense	probably benign	0.07
R5893:Cyp2a4	UTSW	7	26,008,353 (GRCm39)	missense	probably damaging	1.00
R5942:Cyp2a4	UTSW	7	26,010,129 (GRCm39)	critical splice acceptor site	probably null
R6262:Cyp2a4	UTSW	7	26,011,655 (GRCm39)	missense	probably damaging	0.99
R6612:Cyp2a4	UTSW	7	26,008,072 (GRCm39)	missense	probably benign	0.00
R6722:Cyp2a4	UTSW	7	26,012,983 (GRCm39)	missense	probably benign	0.04
R7064:Cyp2a4	UTSW	7	26,011,732 (GRCm39)	missense	probably benign	0.02
R7419:Cyp2a4	UTSW	7	26,014,188 (GRCm39)	missense	probably benign	0.00
R7562:Cyp2a4	UTSW	7	26,012,321 (GRCm39)	missense	possibly damaging	0.88
R8231:Cyp2a4	UTSW	7	26,012,362 (GRCm39)	missense	probably benign	0.00
R8750:Cyp2a4	UTSW	7	26,012,209 (GRCm39)	missense	probably benign	0.00
R8789:Cyp2a4	UTSW	7	26,007,106 (GRCm39)	missense	probably damaging	1.00
R9129:Cyp2a4	UTSW	7	26,014,136 (GRCm39)	missense	probably benign	0.01
R9502:Cyp2a4	UTSW	7	26,008,004 (GRCm39)	missense	probably benign	0.01
R9523:Cyp2a4	UTSW	7	26,011,688 (GRCm39)	missense	probably damaging	1.00
Z1176:Cyp2a4	UTSW	7	26,010,266 (GRCm39)	missense	probably damaging	1.00
Z1176:Cyp2a4	UTSW	7	26,006,748 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ACCAGCTAAGTGATGACCGAC -3'
(R):5'- GCAGACAGTTTAGATACAAGATGC -3'

Sequencing Primer
(F):5'- GTGATGACCGACAGAAGAACATTCC -3'
(R):5'- AGAATCTGTATCCATGTCACACTC -3'

Posted On

2014-06-23