Mutagenetix > Incidental Mutation

Incidental Mutation 'R1835:Ergic2'

205163

Institutional Source

Beutler Lab

Gene Symbol

Ergic2

Ensembl Gene

ENSMUSG00000030304

Gene Name

ERGIC and golgi 2

Synonyms

MMRRC Submission

039862-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.420) question?

Stock #

R1835 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

148179079-148212374 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 148189581 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 211 (Y211F)

Ref Sequence

ENSEMBL: ENSMUSP00000120456 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032446] [ENSMUST00000130242] [ENSMUST00000136008] [ENSMUST00000143282]

AlphaFold

Q9CR89

Predicted Effect

probably benign
Transcript: ENSMUST00000032446

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126773

Predicted Effect

probably benign
Transcript: ENSMUST00000130242

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134574

Predicted Effect

possibly damaging
Transcript: ENSMUST00000136008
AA Change: Y211F

PolyPhen 2 Score 0.605 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000120456
Gene: ENSMUSG00000030304
AA Change: Y211F

Domain	Start	End	E-Value	Type
Pfam:ERGIC_N	13	101	1.6e-26	PFAM
Pfam:COPIIcoated_ERV	157	333	4.8e-51	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000140311

Predicted Effect

probably benign
Transcript: ENSMUST00000143282

SMART Domains

Protein: ENSMUSP00000145143
Gene: ENSMUSG00000030304

Domain	Start	End	E-Value	Type
Pfam:COPIIcoated_ERV	1	89	2.7e-14	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145162

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149631

Predicted Effect

unknown
Transcript: ENSMUST00000203268
AA Change: Y41F

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203993

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 94.9%
20x: 91.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ERGIC2, or PTX1, is a ubiquitously expressed nuclear protein that is downregulated in prostate carcinoma (Kwok et al., 2001 [PubMed 11445006]).[supplied by OMIM, Aug 2008]
PHENOTYPE: Mice homozygous for an ENU-induced point mutation affecting the donor splice site of intron 5 exhibit swelling of the hind feet and tail. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610507B11Rik	G	T	11: 78,287,750	V1993F	probably damaging	Het
4933425L06Rik	C	A	13: 105,082,194	A12E	unknown	Het
Acss2	T	A	2: 155,558,630	Y530N	probably damaging	Het
Adam4	T	C	12: 81,419,559	I763V	probably benign	Het
Aipl1	T	G	11: 72,030,499	K190T	possibly damaging	Het
Alms1	T	A	6: 85,678,503	S3344T	possibly damaging	Het
Alpi	A	G	1: 87,099,414	V381A	possibly damaging	Het
Ankfn1	A	T	11: 89,447,618	S365R	probably benign	Het
Aox2	G	A	1: 58,308,991	A623T	probably benign	Het
Apc	T	A	18: 34,317,077	L2308Q	probably damaging	Het
Atp9b	C	T	18: 80,778,883	V501I	probably benign	Het
Baz2b	T	C	2: 59,901,819	E1994G	probably benign	Het
Cacna1a	T	C	8: 84,581,357		probably null	Het
Cacna1h	C	A	17: 25,392,076	V583L	probably benign	Het
Cd55	T	C	1: 130,447,609		probably benign	Het
Cep192	T	A	18: 67,804,424	S75T	possibly damaging	Het
Cfap54	T	A	10: 92,962,375	D1674V	probably benign	Het
Churc1	T	C	12: 76,773,297	F27L	possibly damaging	Het
Coro1c	A	G	5: 113,848,543	I280T	probably benign	Het
Creb1	C	T	1: 64,550,950	Q32*	probably null	Het
Cyp2b9	A	G	7: 26,200,783	T339A	probably benign	Het
Dctn3	T	C	4: 41,720,813	R51G	probably damaging	Het
Ddb1	T	C	19: 10,626,593	V888A	probably damaging	Het
Disp1	A	G	1: 183,089,000	Y619H	probably damaging	Het
Dnajc9	T	C	14: 20,388,334	D96G	possibly damaging	Het
Eepd1	A	G	9: 25,482,868	T143A	possibly damaging	Het
Eps8	T	A	6: 137,522,279	K204*	probably null	Het
Ercc5	T	A	1: 44,180,875	S1102R	probably benign	Het
Fam135b	G	T	15: 71,490,711	L274M	probably damaging	Het
Fat3	G	A	9: 15,998,088	T2206I	probably damaging	Het
Fat4	A	G	3: 38,983,571	I3791V	probably benign	Het
Gemin4	A	G	11: 76,213,296	M213T	possibly damaging	Het
Gnai3	T	C	3: 108,118,407	M119V	probably benign	Het
Heatr5b	A	T	17: 78,773,563	L1420Q	probably damaging	Het
Herc2	G	T	7: 56,206,765	G3918*	probably null	Het
Ints9	A	G	14: 65,032,256	Y465C	probably damaging	Het
Ist1	A	G	8: 109,678,883	V175A	probably damaging	Het
Kcnj12	T	C	11: 61,069,557	L227P	possibly damaging	Het
Kcnq5	T	C	1: 21,466,387	S416G	probably benign	Het
Kdm3a	T	A	6: 71,613,956	T295S	probably benign	Het
Kif1c	T	A	11: 70,708,971	M479K	probably damaging	Het
Kif20b	T	C	19: 34,956,038	L83P	probably damaging	Het
Kndc1	A	G	7: 139,927,711	E1194G	probably damaging	Het
Llgl1	A	G	11: 60,704,730	M81V	probably benign	Het
Map4k5	C	A	12: 69,824,662	M495I	probably damaging	Het
Mest	C	T	6: 30,742,791	R146C	probably benign	Het
Mettl24	T	A	10: 40,737,816		probably null	Het
Mical1	T	C	10: 41,483,535	S586P	probably benign	Het
Mrgpra3	G	T	7: 47,589,946	Y77*	probably null	Het
Mss51	A	T	14: 20,483,178	C408*	probably null	Het
Myh6	T	C	14: 54,957,401	T666A	probably benign	Het
Myo10	T	C	15: 25,805,587	C1685R	possibly damaging	Het
Naip5	A	T	13: 100,223,218	Y503*	probably null	Het
Neil1	A	C	9: 57,146,604	F144C	probably damaging	Het
Nipbl	T	A	15: 8,343,517	I1082F	possibly damaging	Het
Nkiras1	T	C	14: 18,276,732	V7A	probably damaging	Het
Ntng2	G	A	2: 29,197,057	Q384*	probably null	Het
Ocrl	T	A	X: 47,962,116	I74N	probably damaging	Het
Olfr137	A	T	17: 38,305,312	S50T	probably benign	Het
Olfr1385	A	T	11: 49,494,670	I46F	probably damaging	Het
Olfr1408	A	G	1: 173,130,815	V134A	probably benign	Het
Olfr381	A	C	11: 73,486,374	V150G	probably benign	Het
Olfr535	A	G	7: 140,492,709	S24G	probably benign	Het
Olfr761	C	T	17: 37,952,385	G213E	possibly damaging	Het
Patj	A	G	4: 98,491,590	D151G	probably benign	Het
Plpbp	T	C	8: 27,049,231	V126A	probably damaging	Het
Pold2	A	G	11: 5,873,454	L325P	possibly damaging	Het
Ppp1r12c	A	C	7: 4,483,651	S480A	probably damaging	Het
Pum1	T	C	4: 130,701,048	S124P	possibly damaging	Het
Pwp2	C	G	10: 78,179,091	G353A	probably damaging	Het
Reln	C	A	5: 21,979,002	Q1666H	probably damaging	Het
Rnf19a	T	C	15: 36,265,925	I9V	probably benign	Het
Ryr2	T	C	13: 11,769,878	H1063R	probably benign	Het
Samd14	C	G	11: 95,023,600	D361E	probably damaging	Het
Samd15	A	T	12: 87,201,843	N365I	probably damaging	Het
Sec16b	A	G	1: 157,531,312	H105R	probably benign	Het
Sez6	T	C	11: 77,953,503	S51P	probably benign	Het
Sh3bp1	T	A	15: 78,905,150	L236Q	probably damaging	Het
Sspo	C	T	6: 48,457,340	T991I	probably damaging	Het
Suco	A	T	1: 161,859,500	L97*	probably null	Het
Tab1	C	A	15: 80,148,296	R35S	probably benign	Het
Tet3	C	A	6: 83,404,163	S341I	possibly damaging	Het
Tlr1	A	T	5: 64,925,700	D511E	probably benign	Het
Tmem132b	A	C	5: 125,785,899	D656A	probably damaging	Het
Tmtc4	T	A	14: 122,941,988		probably null	Het
Trmo	T	C	4: 46,380,158	T404A	probably damaging	Het
Trpm1	A	G	7: 64,230,268	K790E	probably damaging	Het
Ulk4	C	A	9: 121,168,184	R774M	probably null	Het
Ush2a	C	T	1: 188,451,818	L1440F	probably benign	Het
Usp16	A	G	16: 87,480,907	K682E	probably damaging	Het
Virma	T	C	4: 11,540,511	S1471P	probably benign	Het
Vmn1r177	A	T	7: 23,865,686	I255N	probably damaging	Het
Vmn2r61	A	T	7: 42,266,652	R230*	probably null	Het
Vps13c	T	A	9: 67,993,013	F3671L	probably benign	Het
Washc5	T	C	15: 59,359,340	N358S	possibly damaging	Het
Wdr72	A	G	9: 74,151,617	K331E	probably damaging	Het
Zfp986	A	T	4: 145,899,235	K155I	probably benign	Het

Other mutations in Ergic2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01083:Ergic2	APN	6	148195271	missense	probably benign
IGL02191:Ergic2	APN	6	148204821	missense	probably null	0.12
IGL02719:Ergic2	APN	6	148204819	missense	possibly damaging	0.82
IGL02958:Ergic2	APN	6	148181943	makesense	probably null
R0389:Ergic2	UTSW	6	148183202	missense	probably benign	0.40
R0416:Ergic2	UTSW	6	148183144	missense	probably damaging	1.00
R0727:Ergic2	UTSW	6	148199400	unclassified	probably benign
R1891:Ergic2	UTSW	6	148183079	missense	probably damaging	0.99
R1959:Ergic2	UTSW	6	148199354	critical splice donor site	probably null
R2504:Ergic2	UTSW	6	148204774	critical splice donor site	probably null
R3414:Ergic2	UTSW	6	148206681	splice site	probably benign
R3732:Ergic2	UTSW	6	148202522	missense	probably damaging	1.00
R3732:Ergic2	UTSW	6	148202522	missense	probably damaging	1.00
R3733:Ergic2	UTSW	6	148202522	missense	probably damaging	1.00
R3734:Ergic2	UTSW	6	148202522	missense	probably damaging	1.00
R5002:Ergic2	UTSW	6	148184158	missense	probably benign	0.00
R5083:Ergic2	UTSW	6	148196014	missense	probably benign	0.00
R5088:Ergic2	UTSW	6	148183123	missense	probably damaging	1.00
R5850:Ergic2	UTSW	6	148183107	missense	possibly damaging	0.93
R6541:Ergic2	UTSW	6	148183150	missense	probably damaging	1.00
R6652:Ergic2	UTSW	6	148189581	missense	probably damaging	1.00
R7073:Ergic2	UTSW	6	148195209	missense	probably damaging	1.00
R7167:Ergic2	UTSW	6	148206635	missense	probably damaging	1.00
R7275:Ergic2	UTSW	6	148195259	missense	probably damaging	1.00
R7299:Ergic2	UTSW	6	148188112	missense	probably damaging	1.00
R8732:Ergic2	UTSW	6	148201477	missense	probably damaging	1.00
R8864:Ergic2	UTSW	6	148181895	missense	probably benign	0.00
R8948:Ergic2	UTSW	6	148202507	missense	probably damaging	0.99
R9437:Ergic2	UTSW	6	148196064	missense	probably benign	0.21

Predicted Primers

PCR Primer
(F):5'- ATCTGCCACTTAGAGACTACAC -3'
(R):5'- ATCAAGAAGGTTCTATGTTTTGGGC -3'

Sequencing Primer
(F):5'- TTAGAGACTACACACAACAGTGCCG -3'
(R):5'- GAGGCAGCATTATCCTTATTGTATAC -3'

Posted On

2014-06-23