Mutagenetix > Incidental Mutation

Incidental Mutation 'R1835:Mical1'

205185

Institutional Source

Beutler Lab

Gene Symbol

Mical1

Ensembl Gene

ENSMUSG00000019823

Gene Name

microtubule associated monooxygenase, calponin and LIM domain containing 1

Synonyms

Nical

MMRRC Submission

039862-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.121) question?

Stock #

R1835 (G1)

Quality Score

180

Status

Not validated

Chromosome

Chromosomal Location

41352310-41363028 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 41359531 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 586 (S586P)

Ref Sequence

ENSEMBL: ENSMUSP00000113783 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019965] [ENSMUST00000019967] [ENSMUST00000099934] [ENSMUST00000119962] [ENSMUST00000126436] [ENSMUST00000155411]

AlphaFold

Q8VDP3

Predicted Effect

probably benign
Transcript: ENSMUST00000019965

SMART Domains

Protein: ENSMUSP00000019965
Gene: ENSMUSG00000019822

Domain	Start	End	E-Value	Type
Pfam:Exo_endo_phos	11	272	3.9e-24	PFAM
transmembrane domain	322	344	N/A	INTRINSIC
transmembrane domain	353	375	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000019967
AA Change: S586P

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000019967
Gene: ENSMUSG00000019823
AA Change: S586P

Domain	Start	End	E-Value	Type
Pfam:FAD_binding_3	84	140	5.5e-8	PFAM
Pfam:FAD_binding_2	86	125	6.1e-6	PFAM
low complexity region	160	171	N/A	INTRINSIC
CH	509	606	4.18e-13	SMART
low complexity region	649	666	N/A	INTRINSIC
LIM	682	736	2.07e-3	SMART
low complexity region	766	785	N/A	INTRINSIC
low complexity region	787	803	N/A	INTRINSIC
low complexity region	855	877	N/A	INTRINSIC
DUF3585	912	1048	3.07e-44	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000099934
AA Change: S513P

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000097519
Gene: ENSMUSG00000019823
AA Change: S513P

Domain	Start	End	E-Value	Type
PDB:2C4C\|B	1	86	5e-49	PDB
low complexity region	87	98	N/A	INTRINSIC
PDB:2C4C\|B	99	416	N/A	PDB
CH	436	533	4.18e-13	SMART
low complexity region	576	593	N/A	INTRINSIC
LIM	609	663	2.07e-3	SMART
low complexity region	693	712	N/A	INTRINSIC
low complexity region	714	730	N/A	INTRINSIC
low complexity region	782	804	N/A	INTRINSIC
DUF3585	839	975	3.07e-44	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000119962
AA Change: S586P

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000113783
Gene: ENSMUSG00000019823
AA Change: S586P

Domain	Start	End	E-Value	Type
Pfam:FAD_binding_3	84	140	7.2e-8	PFAM
Pfam:FAD_binding_2	86	125	3.8e-6	PFAM
low complexity region	160	171	N/A	INTRINSIC
CH	509	606	4.18e-13	SMART
low complexity region	649	666	N/A	INTRINSIC
LIM	682	736	2.07e-3	SMART
low complexity region	766	785	N/A	INTRINSIC
low complexity region	787	803	N/A	INTRINSIC
low complexity region	855	877	N/A	INTRINSIC
DUF3585	912	1048	3.07e-44	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122997

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123798

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125099

Predicted Effect

probably benign
Transcript: ENSMUST00000126436
AA Change: S586P

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000114969
Gene: ENSMUSG00000019823
AA Change: S586P

Domain	Start	End	E-Value	Type
Pfam:FAD_binding_3	84	140	1.1e-7	PFAM
Pfam:FAD_binding_2	86	125	3.2e-6	PFAM
low complexity region	160	171	N/A	INTRINSIC
CH	509	606	4.18e-13	SMART
low complexity region	649	666	N/A	INTRINSIC
LIM	682	736	2.07e-3	SMART
low complexity region	766	785	N/A	INTRINSIC
low complexity region	787	803	N/A	INTRINSIC
low complexity region	855	877	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143470

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126833

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000141542

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130838

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000132170

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147367

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138657

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136681

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125730

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134010

Predicted Effect

probably benign
Transcript: ENSMUST00000155411

SMART Domains

Protein: ENSMUSP00000115461
Gene: ENSMUSG00000019822

Domain	Start	End	E-Value	Type
SCOP:d2dnja_	9	81	2e-4	SMART

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 94.9%
20x: 91.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an enzyme that oxidizes methionine residues on actin, thereby promoting depolymerization of actin filaments. This protein interacts with and regulates signalling by NEDD9/CAS-L (neural precursor cell expressed, developmentally down-regulated 9). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2015]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acss2	T	A	2: 155,400,550 (GRCm39)	Y530N	probably damaging	Het
Adam4	T	C	12: 81,466,333 (GRCm39)	I763V	probably benign	Het
Aipl1	T	G	11: 71,921,325 (GRCm39)	K190T	possibly damaging	Het
Alms1	T	A	6: 85,655,485 (GRCm39)	S3344T	possibly damaging	Het
Alpi	A	G	1: 87,027,136 (GRCm39)	V381A	possibly damaging	Het
Ankfn1	A	T	11: 89,338,444 (GRCm39)	S365R	probably benign	Het
Aox1	G	A	1: 58,348,150 (GRCm39)	A623T	probably benign	Het
Apc	T	A	18: 34,450,130 (GRCm39)	L2308Q	probably damaging	Het
Atp9b	C	T	18: 80,822,098 (GRCm39)	V501I	probably benign	Het
Baz2b	T	C	2: 59,732,163 (GRCm39)	E1994G	probably benign	Het
Bltp2	G	T	11: 78,178,576 (GRCm39)	V1993F	probably damaging	Het
Cacna1a	T	C	8: 85,307,986 (GRCm39)		probably null	Het
Cacna1h	C	A	17: 25,611,050 (GRCm39)	V583L	probably benign	Het
Cd55	T	C	1: 130,375,346 (GRCm39)		probably benign	Het
Cep192	T	A	18: 67,937,494 (GRCm39)	S75T	possibly damaging	Het
Cfap54	T	A	10: 92,798,237 (GRCm39)	D1674V	probably benign	Het
Churc1	T	C	12: 76,820,071 (GRCm39)	F27L	possibly damaging	Het
Coro1c	A	G	5: 113,986,604 (GRCm39)	I280T	probably benign	Het
Creb1	C	T	1: 64,590,109 (GRCm39)	Q32*	probably null	Het
Cyp2b9	A	G	7: 25,900,208 (GRCm39)	T339A	probably benign	Het
Dctn3	T	C	4: 41,720,813 (GRCm39)	R51G	probably damaging	Het
Ddb1	T	C	19: 10,603,957 (GRCm39)	V888A	probably damaging	Het
Disp1	A	G	1: 182,870,564 (GRCm39)	Y619H	probably damaging	Het
Dnajc9	T	C	14: 20,438,402 (GRCm39)	D96G	possibly damaging	Het
Eepd1	A	G	9: 25,394,164 (GRCm39)	T143A	possibly damaging	Het
Eps8	T	A	6: 137,499,277 (GRCm39)	K204*	probably null	Het
Ercc5	T	A	1: 44,220,035 (GRCm39)	S1102R	probably benign	Het
Ergic2	T	A	6: 148,091,079 (GRCm39)	Y211F	possibly damaging	Het
Fam135b	G	T	15: 71,362,560 (GRCm39)	L274M	probably damaging	Het
Fat3	G	A	9: 15,909,384 (GRCm39)	T2206I	probably damaging	Het
Fat4	A	G	3: 39,037,720 (GRCm39)	I3791V	probably benign	Het
Gemin4	A	G	11: 76,104,122 (GRCm39)	M213T	possibly damaging	Het
Gnai3	T	C	3: 108,025,723 (GRCm39)	M119V	probably benign	Het
Heatr5b	A	T	17: 79,080,992 (GRCm39)	L1420Q	probably damaging	Het
Herc2	G	T	7: 55,856,513 (GRCm39)	G3918*	probably null	Het
Ints9	A	G	14: 65,269,705 (GRCm39)	Y465C	probably damaging	Het
Ist1	A	G	8: 110,405,515 (GRCm39)	V175A	probably damaging	Het
Kcnj12	T	C	11: 60,960,383 (GRCm39)	L227P	possibly damaging	Het
Kcnq5	T	C	1: 21,536,611 (GRCm39)	S416G	probably benign	Het
Kdm3a	T	A	6: 71,590,940 (GRCm39)	T295S	probably benign	Het
Kif1c	T	A	11: 70,599,797 (GRCm39)	M479K	probably damaging	Het
Kif20b	T	C	19: 34,933,438 (GRCm39)	L83P	probably damaging	Het
Kndc1	A	G	7: 139,507,624 (GRCm39)	E1194G	probably damaging	Het
Llgl1	A	G	11: 60,595,556 (GRCm39)	M81V	probably benign	Het
Map4k5	C	A	12: 69,871,436 (GRCm39)	M495I	probably damaging	Het
Mest	C	T	6: 30,742,790 (GRCm39)	R146C	probably benign	Het
Mettl24	T	A	10: 40,613,812 (GRCm39)		probably null	Het
Mrgpra3	G	T	7: 47,239,694 (GRCm39)	Y77*	probably null	Het
Mss51	A	T	14: 20,533,246 (GRCm39)	C408*	probably null	Het
Myh6	T	C	14: 55,194,858 (GRCm39)	T666A	probably benign	Het
Myo10	T	C	15: 25,805,673 (GRCm39)	C1685R	possibly damaging	Het
Naip5	A	T	13: 100,359,726 (GRCm39)	Y503*	probably null	Het
Neil1	A	C	9: 57,053,888 (GRCm39)	F144C	probably damaging	Het
Nipbl	T	A	15: 8,373,001 (GRCm39)	I1082F	possibly damaging	Het
Nkiras1	T	C	14: 18,276,732 (GRCm38)	V7A	probably damaging	Het
Nt5el	C	A	13: 105,218,702 (GRCm39)	A12E	unknown	Het
Ntng2	G	A	2: 29,087,069 (GRCm39)	Q384*	probably null	Het
Ocrl	T	A	X: 47,050,993 (GRCm39)	I74N	probably damaging	Het
Or10j27	A	G	1: 172,958,382 (GRCm39)	V134A	probably benign	Het
Or13a22	A	G	7: 140,072,622 (GRCm39)	S24G	probably benign	Het
Or14j8	C	T	17: 38,263,276 (GRCm39)	G213E	possibly damaging	Het
Or1e22	A	C	11: 73,377,200 (GRCm39)	V150G	probably benign	Het
Or2j3	A	T	17: 38,616,203 (GRCm39)	S50T	probably benign	Het
Or2y1	A	T	11: 49,385,497 (GRCm39)	I46F	probably damaging	Het
Patj	A	G	4: 98,379,827 (GRCm39)	D151G	probably benign	Het
Plpbp	T	C	8: 27,539,259 (GRCm39)	V126A	probably damaging	Het
Pold2	A	G	11: 5,823,454 (GRCm39)	L325P	possibly damaging	Het
Ppp1r12c	A	C	7: 4,486,650 (GRCm39)	S480A	probably damaging	Het
Pum1	T	C	4: 130,428,359 (GRCm39)	S124P	possibly damaging	Het
Pwp2	C	G	10: 78,014,925 (GRCm39)	G353A	probably damaging	Het
Reln	C	A	5: 22,184,000 (GRCm39)	Q1666H	probably damaging	Het
Rnf19a	T	C	15: 36,266,071 (GRCm39)	I9V	probably benign	Het
Ryr2	T	C	13: 11,784,764 (GRCm39)	H1063R	probably benign	Het
Samd14	C	G	11: 94,914,426 (GRCm39)	D361E	probably damaging	Het
Samd15	A	T	12: 87,248,617 (GRCm39)	N365I	probably damaging	Het
Sec16b	A	G	1: 157,358,882 (GRCm39)	H105R	probably benign	Het
Sez6	T	C	11: 77,844,329 (GRCm39)	S51P	probably benign	Het
Sh3bp1	T	A	15: 78,789,350 (GRCm39)	L236Q	probably damaging	Het
Sspo	C	T	6: 48,434,274 (GRCm39)	T991I	probably damaging	Het
Suco	A	T	1: 161,687,069 (GRCm39)	L97*	probably null	Het
Tab1	C	A	15: 80,032,497 (GRCm39)	R35S	probably benign	Het
Tet3	C	A	6: 83,381,145 (GRCm39)	S341I	possibly damaging	Het
Tlr1	A	T	5: 65,083,043 (GRCm39)	D511E	probably benign	Het
Tmem132b	A	C	5: 125,862,963 (GRCm39)	D656A	probably damaging	Het
Tmtc4	T	A	14: 123,179,400 (GRCm39)		probably null	Het
Trmo	T	C	4: 46,380,158 (GRCm39)	T404A	probably damaging	Het
Trpm1	A	G	7: 63,880,016 (GRCm39)	K790E	probably damaging	Het
Ulk4	C	A	9: 120,997,250 (GRCm39)	R774M	probably null	Het
Ush2a	C	T	1: 188,184,015 (GRCm39)	L1440F	probably benign	Het
Usp16	A	G	16: 87,277,795 (GRCm39)	K682E	probably damaging	Het
Virma	T	C	4: 11,540,511 (GRCm39)	S1471P	probably benign	Het
Vmn1r177	A	T	7: 23,565,111 (GRCm39)	I255N	probably damaging	Het
Vmn2r61	A	T	7: 41,916,076 (GRCm39)	R230*	probably null	Het
Vps13c	T	A	9: 67,900,295 (GRCm39)	F3671L	probably benign	Het
Washc5	T	C	15: 59,231,189 (GRCm39)	N358S	possibly damaging	Het
Wdr72	A	G	9: 74,058,899 (GRCm39)	K331E	probably damaging	Het
Zfp986	A	T	4: 145,625,805 (GRCm39)	K155I	probably benign	Het

Other mutations in Mical1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01455:Mical1	APN	10	41,355,065 (GRCm39)	critical splice donor site	probably null
IGL01594:Mical1	APN	10	41,356,325 (GRCm39)	missense	probably damaging	1.00
IGL02065:Mical1	APN	10	41,360,407 (GRCm39)	missense	possibly damaging	0.55
IGL02321:Mical1	APN	10	41,362,660 (GRCm39)	missense	possibly damaging	0.52
IGL02323:Mical1	APN	10	41,362,660 (GRCm39)	missense	possibly damaging	0.52
IGL02324:Mical1	APN	10	41,362,660 (GRCm39)	missense	possibly damaging	0.52
IGL02327:Mical1	APN	10	41,362,660 (GRCm39)	missense	possibly damaging	0.52
IGL02416:Mical1	APN	10	41,360,806 (GRCm39)	critical splice donor site	probably null
IGL02419:Mical1	APN	10	41,358,273 (GRCm39)	missense	possibly damaging	0.73
IGL03027:Mical1	APN	10	41,355,501 (GRCm39)	unclassified	probably benign
IGL03087:Mical1	APN	10	41,358,686 (GRCm39)	missense	probably damaging	1.00
IGL03368:Mical1	APN	10	41,355,625 (GRCm39)	missense	probably damaging	0.96
IGL03387:Mical1	APN	10	41,354,195 (GRCm39)	missense	probably damaging	1.00
PIT1430001:Mical1	UTSW	10	41,359,492 (GRCm39)	missense	possibly damaging	0.55
R0433:Mical1	UTSW	10	41,355,486 (GRCm39)	missense	probably benign	0.15
R0617:Mical1	UTSW	10	41,357,311 (GRCm39)	missense	probably damaging	0.97
R0638:Mical1	UTSW	10	41,358,235 (GRCm39)	missense	probably benign	0.01
R1535:Mical1	UTSW	10	41,361,207 (GRCm39)	missense	possibly damaging	0.55
R1623:Mical1	UTSW	10	41,357,389 (GRCm39)	critical splice donor site	probably null
R1712:Mical1	UTSW	10	41,356,359 (GRCm39)	missense	probably damaging	1.00
R1806:Mical1	UTSW	10	41,354,210 (GRCm39)	missense	probably damaging	0.96
R1866:Mical1	UTSW	10	41,361,466 (GRCm39)	missense	probably benign	0.39
R2134:Mical1	UTSW	10	41,358,708 (GRCm39)	missense	probably damaging	1.00
R2352:Mical1	UTSW	10	41,358,229 (GRCm39)	missense	probably benign	0.21
R3740:Mical1	UTSW	10	41,355,067 (GRCm39)	missense	probably benign	0.01
R4033:Mical1	UTSW	10	41,357,172 (GRCm39)	missense	probably benign	0.40
R4093:Mical1	UTSW	10	41,362,933 (GRCm39)	unclassified	probably benign
R4184:Mical1	UTSW	10	41,357,866 (GRCm39)	unclassified	probably benign
R4194:Mical1	UTSW	10	41,357,624 (GRCm39)	missense	possibly damaging	0.88
R4659:Mical1	UTSW	10	41,362,932 (GRCm39)	unclassified	probably benign
R5139:Mical1	UTSW	10	41,354,411 (GRCm39)	splice site	probably null
R5173:Mical1	UTSW	10	41,360,985 (GRCm39)	missense	probably damaging	1.00
R5340:Mical1	UTSW	10	41,359,427 (GRCm39)	splice site	probably null
R5501:Mical1	UTSW	10	41,362,075 (GRCm39)	missense	probably benign	0.01
R5560:Mical1	UTSW	10	41,354,961 (GRCm39)	missense	probably damaging	1.00
R5726:Mical1	UTSW	10	41,359,692 (GRCm39)	unclassified	probably benign
R5864:Mical1	UTSW	10	41,362,064 (GRCm39)	missense	possibly damaging	0.88
R5905:Mical1	UTSW	10	41,362,873 (GRCm39)	missense	probably benign	0.00
R6028:Mical1	UTSW	10	41,362,873 (GRCm39)	missense	probably benign	0.00
R6047:Mical1	UTSW	10	41,357,703 (GRCm39)	critical splice donor site	probably null
R6074:Mical1	UTSW	10	41,362,061 (GRCm39)	missense	probably benign	0.27
R6458:Mical1	UTSW	10	41,360,731 (GRCm39)	missense	probably benign	0.44
R6879:Mical1	UTSW	10	41,360,515 (GRCm39)	missense	probably damaging	0.99
R6966:Mical1	UTSW	10	41,355,750 (GRCm39)	missense	probably damaging	0.98
R7049:Mical1	UTSW	10	41,358,246 (GRCm39)	missense	possibly damaging	0.63
R7095:Mical1	UTSW	10	41,355,206 (GRCm39)	splice site	probably null
R7156:Mical1	UTSW	10	41,361,253 (GRCm39)	critical splice donor site	probably null
R7312:Mical1	UTSW	10	41,355,772 (GRCm39)	critical splice donor site	probably null
R8021:Mical1	UTSW	10	41,358,720 (GRCm39)	missense	probably damaging	0.97
R8056:Mical1	UTSW	10	41,357,168 (GRCm39)	missense	probably damaging	1.00
R8427:Mical1	UTSW	10	41,354,591 (GRCm39)	missense	probably damaging	1.00
R8883:Mical1	UTSW	10	41,355,636 (GRCm39)	missense
R9021:Mical1	UTSW	10	41,361,141 (GRCm39)	missense	probably benign	0.43
R9368:Mical1	UTSW	10	41,357,302 (GRCm39)	missense	possibly damaging	0.76
R9526:Mical1	UTSW	10	41,358,602 (GRCm39)	missense	probably benign
R9651:Mical1	UTSW	10	41,362,022 (GRCm39)	critical splice acceptor site	probably null
X0020:Mical1	UTSW	10	41,354,992 (GRCm39)	missense	probably damaging	1.00
Z1177:Mical1	UTSW	10	41,357,701 (GRCm39)	missense	probably null	1.00

Predicted Primers

PCR Primer
(F):5'- GACAACCTTCATGCGCTCAC -3'
(R):5'- TCTGGAGTTTGCCAAGGAAAAG -3'

Sequencing Primer
(F):5'- ATGCGCTCACTCACCCC -3'
(R):5'- AAGTATAGCACTGGGGGTTCC -3'

Posted On

2014-06-23