Mutagenetix > Incidental Mutation

Incidental Mutation 'R1835:Tab1'

205222

Institutional Source

Beutler Lab

Gene Symbol

Tab1

Ensembl Gene

ENSMUSG00000022414

Gene Name

TGF-beta activated kinase 1/MAP3K7 binding protein 1

Synonyms

2310012M03Rik, Map3k7ip1, b2b449Clo, Tak1-binding protein 1

MMRRC Submission

039862-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1835 (G1)

Quality Score

177

Status

Not validated

Chromosome

Chromosomal Location

80133127-80161707 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 80148296 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 35 (R35S)

Ref Sequence

ENSEMBL: ENSMUSP00000023050 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023050] [ENSMUST00000229320]

AlphaFold

Q8CF89

PDB Structure

Structural basis of autoactivation of p38 alpha induced by TAB1 (Monoclinic crystal form) [X-RAY DIFFRACTION]
Structural basis of autoactivation of p38 alpha induced by TAB1 (Tetragonal crystal form) [X-RAY DIFFRACTION]
Structural basis of autoactivation of p38 alpha induced by TAB1 (Tetragonal crystal form with bound sulphate) [X-RAY DIFFRACTION]

Predicted Effect

probably benign
Transcript: ENSMUST00000023050
AA Change: R35S

PolyPhen 2 Score 0.421 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000023050
Gene: ENSMUSG00000022414
AA Change: R35S

Domain	Start	End	E-Value	Type
PP2Cc	26	363	7.45e-40	SMART
low complexity region	397	408	N/A	INTRINSIC
low complexity region	438	455	N/A	INTRINSIC
PDB:4L3P\|A	466	502	6e-17	PDB

Predicted Effect

silent
Transcript: ENSMUST00000229320

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000230479

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 94.9%
20x: 91.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was identified as a regulator of the MAP kinase kinase kinase MAP3K7/TAK1, which is known to mediate various intracellular signaling pathways, such as those induced by TGF beta, interleukin 1, and WNT-1. This protein interacts and thus activates TAK1 kinase. It has been shown that the C-terminal portion of this protein is sufficient for binding and activation of TAK1, while a portion of the N-terminus acts as a dominant-negative inhibitor of TGF beta, suggesting that this protein may function as a mediator between TGF beta receptors and TAK1. This protein can also interact with and activate the mitogen-activated protein kinase 14 (MAPK14/p38alpha), and thus represents an alternative activation pathway, in addition to the MAPKK pathways, which contributes to the biological responses of MAPK14 to various stimuli. Alternatively spliced transcript variants encoding distinct isoforms have been reported. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutant fetuses exhibit edema, hemorrhaging, cardiovascular and pulmonary dysmorphogenesis, and die in the late stages of gestation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 97 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610507B11Rik	G	T	11: 78,287,750	V1993F	probably damaging	Het
4933425L06Rik	C	A	13: 105,082,194	A12E	unknown	Het
Acss2	T	A	2: 155,558,630	Y530N	probably damaging	Het
Adam4	T	C	12: 81,419,559	I763V	probably benign	Het
Aipl1	T	G	11: 72,030,499	K190T	possibly damaging	Het
Alms1	T	A	6: 85,678,503	S3344T	possibly damaging	Het
Alpi	A	G	1: 87,099,414	V381A	possibly damaging	Het
Ankfn1	A	T	11: 89,447,618	S365R	probably benign	Het
Aox2	G	A	1: 58,308,991	A623T	probably benign	Het
Apc	T	A	18: 34,317,077	L2308Q	probably damaging	Het
Atp9b	C	T	18: 80,778,883	V501I	probably benign	Het
Baz2b	T	C	2: 59,901,819	E1994G	probably benign	Het
Cacna1a	T	C	8: 84,581,357		probably null	Het
Cacna1h	C	A	17: 25,392,076	V583L	probably benign	Het
Cd55	T	C	1: 130,447,609		probably benign	Het
Cep192	T	A	18: 67,804,424	S75T	possibly damaging	Het
Cfap54	T	A	10: 92,962,375	D1674V	probably benign	Het
Churc1	T	C	12: 76,773,297	F27L	possibly damaging	Het
Coro1c	A	G	5: 113,848,543	I280T	probably benign	Het
Creb1	C	T	1: 64,550,950	Q32*	probably null	Het
Cyp2b9	A	G	7: 26,200,783	T339A	probably benign	Het
Dctn3	T	C	4: 41,720,813	R51G	probably damaging	Het
Ddb1	T	C	19: 10,626,593	V888A	probably damaging	Het
Disp1	A	G	1: 183,089,000	Y619H	probably damaging	Het
Dnajc9	T	C	14: 20,388,334	D96G	possibly damaging	Het
Eepd1	A	G	9: 25,482,868	T143A	possibly damaging	Het
Eps8	T	A	6: 137,522,279	K204*	probably null	Het
Ercc5	T	A	1: 44,180,875	S1102R	probably benign	Het
Ergic2	T	A	6: 148,189,581	Y211F	possibly damaging	Het
Fam135b	G	T	15: 71,490,711	L274M	probably damaging	Het
Fat3	G	A	9: 15,998,088	T2206I	probably damaging	Het
Fat4	A	G	3: 38,983,571	I3791V	probably benign	Het
Gemin4	A	G	11: 76,213,296	M213T	possibly damaging	Het
Gnai3	T	C	3: 108,118,407	M119V	probably benign	Het
Heatr5b	A	T	17: 78,773,563	L1420Q	probably damaging	Het
Herc2	G	T	7: 56,206,765	G3918*	probably null	Het
Ints9	A	G	14: 65,032,256	Y465C	probably damaging	Het
Ist1	A	G	8: 109,678,883	V175A	probably damaging	Het
Kcnj12	T	C	11: 61,069,557	L227P	possibly damaging	Het
Kcnq5	T	C	1: 21,466,387	S416G	probably benign	Het
Kdm3a	T	A	6: 71,613,956	T295S	probably benign	Het
Kif1c	T	A	11: 70,708,971	M479K	probably damaging	Het
Kif20b	T	C	19: 34,956,038	L83P	probably damaging	Het
Kndc1	A	G	7: 139,927,711	E1194G	probably damaging	Het
Llgl1	A	G	11: 60,704,730	M81V	probably benign	Het
Map4k5	C	A	12: 69,824,662	M495I	probably damaging	Het
Mest	C	T	6: 30,742,791	R146C	probably benign	Het
Mettl24	T	A	10: 40,737,816		probably null	Het
Mical1	T	C	10: 41,483,535	S586P	probably benign	Het
Mrgpra3	G	T	7: 47,589,946	Y77*	probably null	Het
Mss51	A	T	14: 20,483,178	C408*	probably null	Het
Myh6	T	C	14: 54,957,401	T666A	probably benign	Het
Myo10	T	C	15: 25,805,587	C1685R	possibly damaging	Het
Naip5	A	T	13: 100,223,218	Y503*	probably null	Het
Neil1	A	C	9: 57,146,604	F144C	probably damaging	Het
Nipbl	T	A	15: 8,343,517	I1082F	possibly damaging	Het
Nkiras1	T	C	14: 18,276,732	V7A	probably damaging	Het
Ntng2	G	A	2: 29,197,057	Q384*	probably null	Het
Ocrl	T	A	X: 47,962,116	I74N	probably damaging	Het
Olfr137	A	T	17: 38,305,312	S50T	probably benign	Het
Olfr1385	A	T	11: 49,494,670	I46F	probably damaging	Het
Olfr1408	A	G	1: 173,130,815	V134A	probably benign	Het
Olfr381	A	C	11: 73,486,374	V150G	probably benign	Het
Olfr535	A	G	7: 140,492,709	S24G	probably benign	Het
Olfr761	C	T	17: 37,952,385	G213E	possibly damaging	Het
Patj	A	G	4: 98,491,590	D151G	probably benign	Het
Plpbp	T	C	8: 27,049,231	V126A	probably damaging	Het
Pold2	A	G	11: 5,873,454	L325P	possibly damaging	Het
Ppp1r12c	A	C	7: 4,483,651	S480A	probably damaging	Het
Pum1	T	C	4: 130,701,048	S124P	possibly damaging	Het
Pwp2	C	G	10: 78,179,091	G353A	probably damaging	Het
Reln	C	A	5: 21,979,002	Q1666H	probably damaging	Het
Rnf19a	T	C	15: 36,265,925	I9V	probably benign	Het
Ryr2	T	C	13: 11,769,878	H1063R	probably benign	Het
Samd14	C	G	11: 95,023,600	D361E	probably damaging	Het
Samd15	A	T	12: 87,201,843	N365I	probably damaging	Het
Sec16b	A	G	1: 157,531,312	H105R	probably benign	Het
Sez6	T	C	11: 77,953,503	S51P	probably benign	Het
Sh3bp1	T	A	15: 78,905,150	L236Q	probably damaging	Het
Sspo	C	T	6: 48,457,340	T991I	probably damaging	Het
Suco	A	T	1: 161,859,500	L97*	probably null	Het
Tet3	C	A	6: 83,404,163	S341I	possibly damaging	Het
Tlr1	A	T	5: 64,925,700	D511E	probably benign	Het
Tmem132b	A	C	5: 125,785,899	D656A	probably damaging	Het
Tmtc4	T	A	14: 122,941,988		probably null	Het
Trmo	T	C	4: 46,380,158	T404A	probably damaging	Het
Trpm1	A	G	7: 64,230,268	K790E	probably damaging	Het
Ulk4	C	A	9: 121,168,184	R774M	probably null	Het
Ush2a	C	T	1: 188,451,818	L1440F	probably benign	Het
Usp16	A	G	16: 87,480,907	K682E	probably damaging	Het
Virma	T	C	4: 11,540,511	S1471P	probably benign	Het
Vmn1r177	A	T	7: 23,865,686	I255N	probably damaging	Het
Vmn2r61	A	T	7: 42,266,652	R230*	probably null	Het
Vps13c	T	A	9: 67,993,013	F3671L	probably benign	Het
Washc5	T	C	15: 59,359,340	N358S	possibly damaging	Het
Wdr72	A	G	9: 74,151,617	K331E	probably damaging	Het
Zfp986	A	T	4: 145,899,235	K155I	probably benign	Het

Other mutations in Tab1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02686:Tab1	APN	15	80148830	missense	probably benign	0.05
memento	UTSW	15	80153668	missense	probably damaging	0.96
Memoir	UTSW	15	80153740	missense	probably damaging	1.00
R0085:Tab1	UTSW	15	80155893	missense	probably benign	0.00
R1341:Tab1	UTSW	15	80160114	missense	possibly damaging	0.86
R1907:Tab1	UTSW	15	80153668	missense	probably damaging	0.96
R3113:Tab1	UTSW	15	80148260	missense	probably benign	0.23
R3943:Tab1	UTSW	15	80153740	missense	probably damaging	1.00
R3944:Tab1	UTSW	15	80153740	missense	probably damaging	1.00
R4845:Tab1	UTSW	15	80152763	missense	probably damaging	1.00
R5345:Tab1	UTSW	15	80149813	missense	possibly damaging	0.48
R5696:Tab1	UTSW	15	80148729	nonsense	probably null
R6223:Tab1	UTSW	15	80148263	missense	probably damaging	1.00
R6242:Tab1	UTSW	15	80155770	nonsense	probably null
R6561:Tab1	UTSW	15	80148830	missense	probably benign	0.05
R7239:Tab1	UTSW	15	80133171	missense	probably benign	0.15
R7422:Tab1	UTSW	15	80160244	missense	probably benign	0.00
R7810:Tab1	UTSW	15	80158798	missense	possibly damaging	0.86
R7922:Tab1	UTSW	15	80158865	missense	possibly damaging	0.52
R7951:Tab1	UTSW	15	80158857	missense	probably damaging	0.98
R8007:Tab1	UTSW	15	80158768	missense	possibly damaging	0.94
R8037:Tab1	UTSW	15	80160270	missense	probably benign	0.08
R8038:Tab1	UTSW	15	80160270	missense	probably benign	0.08
R9221:Tab1	UTSW	15	80150553	missense	probably benign	0.00
R9273:Tab1	UTSW	15	80157703	missense	probably benign	0.00
R9590:Tab1	UTSW	15	80155896	missense	probably damaging	0.97
R9762:Tab1	UTSW	15	80148742	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- TAACCATCTTGCAGGCTGC -3'
(R):5'- ACAATGACCTGCTTGCTGAATC -3'

Sequencing Primer
(F):5'- CCTTTGCCCTGTTGGAG -3'
(R):5'- AGGCGACACTTCCCATAGG -3'

Posted On

2014-06-23