Mutagenetix > Incidental Mutation

Incidental Mutation 'R1836:Capn9'

205299

Institutional Source

Beutler Lab

Gene Symbol

Capn9

Ensembl Gene

ENSMUSG00000031981

Gene Name

calpain 9

Synonyms

GC36, nCL-4

MMRRC Submission

039863-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.394) question?

Stock #

R1836 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

125302850-125345470 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to A at 125332304 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000090717 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000093033]

AlphaFold

Q9D805

Predicted Effect

probably null
Transcript: ENSMUST00000093033

SMART Domains

Protein: ENSMUSP00000090717
Gene: ENSMUSG00000031981

Domain	Start	End	E-Value	Type
CysPc	24	345	1.53e-196	SMART
calpain_III	348	494	1.91e-87	SMART
low complexity region	504	522	N/A	INTRINSIC
EFh	565	593	1.25e-2	SMART
EFh	595	623	2.64e-1	SMART

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.1%
20x: 91.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Calpains are ubiquitous, well-conserved family of calcium-dependent, cysteine proteases. The calpain proteins are heterodimers consisting of an invariant small subunit and variable large subunits. The large subunit possesses a cysteine protease domain, and both subunits possess calcium-binding domains. Calpains have been implicated in neurodegenerative processes, as their activation can be triggered by calcium influx and oxidative stress. The protein encoded by this gene is expressed predominantly in stomach and small intestine and may have specialized functions in the digestive tract. This gene is thought to be associated with gastric cancer. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased sensitivity to ethanol-induced gastric mucosa injury. [provided by MGI curators]

Allele List at MGI

All alleles(1) : Gene trapped(1)

Other mutations in this stock

Total: 108 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2210408I21Rik	A	G	13: 77,471,493 (GRCm39)	E966G	probably benign	Het
9330159F19Rik	T	C	10: 29,097,795 (GRCm39)	V64A	probably damaging	Het
Abcb5	G	T	12: 118,831,696 (GRCm39)	Q1219K	possibly damaging	Het
Acox2	A	T	14: 8,248,059 (GRCm38)	C408S	possibly damaging	Het
Acsf3	T	A	8: 123,506,922 (GRCm39)	Y72N	probably damaging	Het
Acss2	T	A	2: 155,400,550 (GRCm39)	Y530N	probably damaging	Het
Adam28	T	C	14: 68,886,870 (GRCm39)	E48G	possibly damaging	Het
Adgrv1	A	C	13: 81,652,232 (GRCm39)	M2957R	probably benign	Het
Adi1	C	A	12: 28,729,562 (GRCm39)	D138E	probably benign	Het
Alk	A	C	17: 72,198,032 (GRCm39)	L1228R	probably damaging	Het
Alms1	T	A	6: 85,655,485 (GRCm39)	S3344T	possibly damaging	Het
Aox1	G	A	1: 58,348,150 (GRCm39)	A623T	probably benign	Het
Arhgef2	C	T	3: 88,546,766 (GRCm39)	T545I	probably damaging	Het
Atp8a2	T	A	14: 60,243,815 (GRCm39)	N630I	possibly damaging	Het
Bcl9	G	T	3: 97,113,186 (GRCm39)	Q1090K	probably damaging	Het
Bdp1	A	G	13: 100,171,653 (GRCm39)	S2152P	probably benign	Het
Birc6	T	A	17: 74,921,385 (GRCm39)	S2155T	probably benign	Het
Camk2b	T	C	11: 5,922,384 (GRCm39)	E488G	probably damaging	Het
Cd209f	A	G	8: 4,154,491 (GRCm39)	S119P	probably damaging	Het
Cep78	T	C	19: 15,946,533 (GRCm39)	E433G	probably damaging	Het
Chid1	G	T	7: 141,106,409 (GRCm39)		probably null	Het
Cldnd2	T	C	7: 43,092,349 (GRCm39)	S129P	possibly damaging	Het
Cobll1	A	T	2: 64,956,580 (GRCm39)	F289Y	probably damaging	Het
Creb1	C	T	1: 64,590,109 (GRCm39)	Q32*	probably null	Het
Creb3l4	G	T	3: 90,146,210 (GRCm39)	S182Y	probably benign	Het
Dgcr2	A	T	16: 17,667,584 (GRCm39)	C292S	probably damaging	Het
Dnah8	T	C	17: 31,093,901 (GRCm39)	V4665A	possibly damaging	Het
Dnah9	A	T	11: 66,009,667 (GRCm39)	M740K	probably benign	Het
Dnmt1	G	A	9: 20,829,542 (GRCm39)	T687I	probably damaging	Het
Ece1	C	T	4: 137,685,312 (GRCm39)	R601W	probably damaging	Het
Echdc2	C	A	4: 108,022,732 (GRCm39)	R3S	probably damaging	Het
Ep400	A	T	5: 110,852,920 (GRCm39)	L1275Q	unknown	Het
Epha6	A	T	16: 60,026,108 (GRCm39)	W445R	probably damaging	Het
Ercc5	T	A	1: 44,220,035 (GRCm39)	S1102R	probably benign	Het
Fam228a	T	G	12: 4,765,620 (GRCm39)	T264P	probably damaging	Het
Fzd6	T	A	15: 38,897,315 (GRCm39)	I488N	probably damaging	Het
Gabrg3	T	G	7: 56,379,389 (GRCm39)	N338H	probably damaging	Het
Gde1	A	G	7: 118,294,357 (GRCm39)	F39L	possibly damaging	Het
Gjb3	G	A	4: 127,220,224 (GRCm39)	R103W	probably damaging	Het
Gm4781	T	A	10: 100,232,582 (GRCm39)		noncoding transcript	Het
Gm4846	T	A	1: 166,311,492 (GRCm39)	T456S	probably benign	Het
Gpx5	A	G	13: 21,471,624 (GRCm39)	I193T	probably benign	Het
H3c2	T	A	13: 23,936,715 (GRCm39)	V118D	probably damaging	Het
Herc2	A	T	7: 55,804,853 (GRCm39)	K2294*	probably null	Het
Iqgap3	T	A	3: 88,015,675 (GRCm39)	V19D	probably damaging	Het
Itga5	T	C	15: 103,254,441 (GRCm39)	I1006V	probably damaging	Het
Lamb1	C	T	12: 31,351,093 (GRCm39)	T781I	probably benign	Het
Lias	A	G	5: 65,549,686 (GRCm39)	T57A	probably benign	Het
Lin37	C	A	7: 30,256,368 (GRCm39)	R108L	probably damaging	Het
Lrrd1	A	T	5: 3,915,709 (GRCm39)	T769S	probably benign	Het
Mamstr	T	C	7: 45,294,387 (GRCm39)	W414R	probably damaging	Het
Mtmr11	T	G	3: 96,072,103 (GRCm39)	S233R	probably damaging	Het
Myh1	A	T	11: 67,095,648 (GRCm39)	I266F	probably damaging	Het
Myt1	C	A	2: 181,439,068 (GRCm39)	Q197K	probably benign	Het
Naip5	G	T	13: 100,356,195 (GRCm39)	T1140K	probably benign	Het
Ncf2	G	A	1: 152,683,822 (GRCm39)	V14M	probably damaging	Het
Ndufb11b	T	C	15: 81,865,068 (GRCm39)	V103A	probably damaging	Het
Nhsl1	G	T	10: 18,400,653 (GRCm39)	R626S	possibly damaging	Het
Nol12	T	A	15: 78,822,089 (GRCm39)	V108E	probably damaging	Het
Nr1i2	G	T	16: 38,069,644 (GRCm39)	P420Q	probably damaging	Het
Nup155	A	G	15: 8,184,464 (GRCm39)	I1286M	possibly damaging	Het
Ocrl	T	A	X: 47,050,993 (GRCm39)	I74N	probably damaging	Het
Or4c10b	A	C	2: 89,711,629 (GRCm39)	H153P	probably damaging	Het
Or51b17	A	G	7: 103,542,592 (GRCm39)	S117P	probably damaging	Het
Or5ak23	A	G	2: 85,244,749 (GRCm39)	V158A	probably benign	Het
Pard3b	C	T	1: 62,676,763 (GRCm39)	S999L	probably benign	Het
Pax9	A	G	12: 56,746,839 (GRCm39)	E225G	probably benign	Het
Pdcd4	T	G	19: 53,914,650 (GRCm39)	L335R	probably damaging	Het
Pdgfra	T	A	5: 75,343,675 (GRCm39)	M732K	possibly damaging	Het
Pkhd1	G	T	1: 20,187,293 (GRCm39)	Q3672K	probably benign	Het
Pold2	A	G	11: 5,823,454 (GRCm39)	L325P	possibly damaging	Het
Pom121l2	A	T	13: 22,167,954 (GRCm39)	T742S	probably benign	Het
Ppfia1	C	T	7: 144,073,368 (GRCm39)	E208K	probably benign	Het
Prex2	A	T	1: 11,207,004 (GRCm39)	R521W	probably damaging	Het
Prr23a4	C	A	9: 98,785,535 (GRCm39)	R67S	probably benign	Het
Rhpn2	T	C	7: 35,071,813 (GRCm39)	L226P	probably benign	Het
Rps12	C	A	10: 23,661,527 (GRCm39)	D95Y	probably damaging	Het
Sardh	T	A	2: 27,105,194 (GRCm39)	D643V	possibly damaging	Het
Sars1	T	C	3: 108,343,260 (GRCm39)	D77G	probably benign	Het
Scin	C	A	12: 40,174,697 (GRCm39)	V129F	probably damaging	Het
Semp2l1	T	G	1: 32,584,758 (GRCm39)	D384A	probably damaging	Het
Sftpa1	T	A	14: 40,854,803 (GRCm39)	M66K	possibly damaging	Het
Sgo1	T	C	17: 53,994,799 (GRCm39)	K28E	probably damaging	Het
Sim2	G	T	16: 93,924,436 (GRCm39)		probably null	Het
Srp54b	T	A	12: 55,296,945 (GRCm39)		probably null	Het
Stard7	T	C	2: 127,137,480 (GRCm39)	V310A	probably benign	Het
Tasp1	T	C	2: 139,793,477 (GRCm39)	D233G	probably damaging	Het
Tdrd6	G	T	17: 43,936,480 (GRCm39)	L1523M	probably benign	Het
Tle3	A	G	9: 61,321,305 (GRCm39)	D639G	probably damaging	Het
Tmem128	A	G	5: 38,417,750 (GRCm39)	D2G	probably damaging	Het
Tmem163	A	G	1: 127,605,246 (GRCm39)	S41P	probably benign	Het
Ttn	C	T	2: 76,559,505 (GRCm39)	S29632N	probably damaging	Het
Tuba4a	A	G	1: 75,192,754 (GRCm39)	S287P	probably benign	Het
Ubn1	G	C	16: 4,895,255 (GRCm39)	G767A	probably benign	Het
Ugdh	A	T	5: 65,577,634 (GRCm39)	C288*	probably null	Het
Upf2	T	A	2: 6,055,135 (GRCm39)		probably null	Het
Vmn1r2	T	C	4: 3,172,836 (GRCm39)	S252P	probably damaging	Het
Vmn1r28	A	C	6: 58,242,237 (GRCm39)	T27P	probably damaging	Het
Vmn1r77	T	C	7: 11,775,338 (GRCm39)	I38T	probably benign	Het
Vmn2r51	C	A	7: 9,832,090 (GRCm39)	E499*	probably null	Het
Vmn2r51	G	T	7: 9,832,091 (GRCm39)	Y498*	probably null	Het
Vmn2r53	A	T	7: 12,334,812 (GRCm39)	W283R	probably damaging	Het
Vpreb1a	T	A	16: 16,686,933 (GRCm39)	T15S	probably benign	Het
Vps13b	T	C	15: 35,910,378 (GRCm39)	S3381P	probably damaging	Het
Wnt2	A	T	6: 18,023,234 (GRCm39)	D138E	probably damaging	Het
Zdhhc22	A	G	12: 87,030,204 (GRCm39)	V248A	probably benign	Het
Zfp30	T	A	7: 29,492,805 (GRCm39)	I434N	probably damaging	Het
Zfp316	A	G	5: 143,239,178 (GRCm39)	L947P	probably damaging	Het

Other mutations in Capn9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01743:Capn9	APN	8	125,318,508 (GRCm39)	missense	probably benign
IGL01987:Capn9	APN	8	125,302,965 (GRCm39)	missense	probably benign	0.01
IGL02150:Capn9	APN	8	125,340,582 (GRCm39)	missense	probably benign	0.01
IGL02348:Capn9	APN	8	125,321,416 (GRCm39)	missense	probably damaging	1.00
IGL02720:Capn9	APN	8	125,327,236 (GRCm39)	splice site	probably benign
IGL02723:Capn9	APN	8	125,335,922 (GRCm39)	splice site	probably benign
IGL03065:Capn9	APN	8	125,332,298 (GRCm39)	missense	probably damaging	1.00
IGL03169:Capn9	APN	8	125,332,616 (GRCm39)	missense	probably damaging	1.00
A2778:Capn9	UTSW	8	125,332,217 (GRCm39)	missense	possibly damaging	0.95
R0288:Capn9	UTSW	8	125,327,230 (GRCm39)	splice site	probably benign
R1353:Capn9	UTSW	8	125,332,305 (GRCm39)	splice site	probably null
R1611:Capn9	UTSW	8	125,338,251 (GRCm39)	missense	possibly damaging	0.90
R1672:Capn9	UTSW	8	125,340,570 (GRCm39)	missense	probably benign	0.03
R1682:Capn9	UTSW	8	125,338,304 (GRCm39)	splice site	probably null
R1729:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R1739:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R1762:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R1783:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R1784:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R1785:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R1883:Capn9	UTSW	8	125,338,297 (GRCm39)	missense	probably benign
R1924:Capn9	UTSW	8	125,302,965 (GRCm39)	missense	probably benign	0.01
R2008:Capn9	UTSW	8	125,318,424 (GRCm39)	missense	probably damaging	1.00
R2049:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R2069:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R2131:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R2141:Capn9	UTSW	8	125,332,450 (GRCm39)	missense	possibly damaging	0.90
R2219:Capn9	UTSW	8	125,335,898 (GRCm39)	nonsense	probably null
R4193:Capn9	UTSW	8	125,327,225 (GRCm39)	missense	probably null	0.00
R4707:Capn9	UTSW	8	125,340,195 (GRCm39)	missense	possibly damaging	0.82
R5092:Capn9	UTSW	8	125,324,264 (GRCm39)	missense	probably damaging	1.00
R5386:Capn9	UTSW	8	125,332,279 (GRCm39)	missense	possibly damaging	0.83
R5697:Capn9	UTSW	8	125,315,810 (GRCm39)	missense	unknown
R5734:Capn9	UTSW	8	125,332,583 (GRCm39)	missense	probably damaging	1.00
R5999:Capn9	UTSW	8	125,315,817 (GRCm39)	missense	probably damaging	1.00
R6026:Capn9	UTSW	8	125,332,601 (GRCm39)	missense	probably damaging	1.00
R6298:Capn9	UTSW	8	125,344,193 (GRCm39)	missense	probably benign
R6787:Capn9	UTSW	8	125,342,924 (GRCm39)	missense	probably benign	0.00
R6856:Capn9	UTSW	8	125,324,308 (GRCm39)	missense	probably damaging	1.00
R7131:Capn9	UTSW	8	125,303,017 (GRCm39)	missense	probably damaging	1.00
R7149:Capn9	UTSW	8	125,332,448 (GRCm39)	missense	probably benign	0.00
R7975:Capn9	UTSW	8	125,325,515 (GRCm39)	missense	probably damaging	1.00
R8086:Capn9	UTSW	8	125,334,692 (GRCm39)	critical splice acceptor site	probably null
R9197:Capn9	UTSW	8	125,340,600 (GRCm39)	missense	probably damaging	0.98
R9366:Capn9	UTSW	8	125,332,280 (GRCm39)	missense	probably benign	0.24
R9415:Capn9	UTSW	8	125,332,449 (GRCm39)	missense	probably benign	0.00
R9472:Capn9	UTSW	8	125,325,534 (GRCm39)	critical splice donor site	probably null
RF015:Capn9	UTSW	8	125,345,221 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GGACATGATAGTAATCCACCCC -3'
(R):5'- ATGAACGTCTTGCTTCGGGC -3'

Sequencing Primer
(F):5'- GACATGATAGTAATCCACCCCCTTTC -3'
(R):5'- GGCATGGTACCTGAAAAAGTCCC -3'

Posted On

2014-06-23