Mutagenetix > Incidental Mutations

Incidental Mutation 'R0112:Abcd4'

20537

Institutional Source

Beutler Lab

Gene Symbol

Abcd4

Ensembl Gene

ENSMUSG00000021240

Gene Name

ATP-binding cassette, sub-family D (ALD), member 4

Synonyms

Pxmp1l, P69r

MMRRC Submission

038398-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.187) question?

Stock #

R0112 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

84601464-84617413 bp(-) (GRCm38)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 84612899 bp

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000152694 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021666] [ENSMUST00000221070] [ENSMUST00000222581] [ENSMUST00000223107]

Predicted Effect

probably benign
Transcript: ENSMUST00000021666

SMART Domains

Protein: ENSMUSP00000021666
Gene: ENSMUSG00000021240

Domain	Start	End	E-Value	Type
Pfam:ABC_membrane_2	14	294	5.4e-86	PFAM
AAA	413	604	2.05e-4	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000220553

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000220678

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000220952

Predicted Effect

probably benign
Transcript: ENSMUST00000221070

Predicted Effect

probably benign
Transcript: ENSMUST00000222581

Predicted Effect

probably benign
Transcript: ENSMUST00000222889

Predicted Effect

probably benign
Transcript: ENSMUST00000223107

Coding Region Coverage

1x: 99.0%
3x: 98.1%
10x: 96.0%
20x: 91.8%

Validation Efficiency

100% (86/86)

MGI Phenotype

FUNCTION: The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the ALD subfamily, which is involved in peroxisomal import of fatty acids and/or fatty acyl-CoAs in the organelle. All known peroxisomal ABC transporters are half transporters which require a partner half transporter molecule to form a functional homodimeric or heterodimeric transporter. The function of this peroxisomal membrane protein is unknown. However, it is speculated that the human protein may function as a heterodimer for another peroxisomal ABC transporter and, therefore, may modify the adrenoleukodystrophy phenotype. It may also play a role in the process of peroxisome biogenesis. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930568D16Rik	T	A	2: 35,354,803	Y179F	probably benign	Het
Abhd12b	C	T	12: 70,181,017	T191M	probably benign	Het
Adcy5	A	G	16: 35,156,178	E27G	possibly damaging	Het
Adgb	G	A	10: 10,407,158		probably benign	Het
Afdn	T	C	17: 13,884,637	S1186P	probably damaging	Het
Atf6b	G	T	17: 34,651,626	R351L	probably damaging	Het
Axin2	T	C	11: 108,939,397	S348P	possibly damaging	Het
BC030499	T	C	11: 78,291,681		probably benign	Het
Bfsp1	A	C	2: 143,827,643		probably null	Het
Brd1	A	G	15: 88,730,383	V103A	probably benign	Het
Ccdc13	C	A	9: 121,813,481	K392N	probably damaging	Het
Ccdc18	A	G	5: 108,173,761	K577R	probably damaging	Het
Csmd2	G	T	4: 128,496,029	G2186C	probably damaging	Het
Cyp2j5	A	T	4: 96,629,523	M484K	probably benign	Het
Defb3	T	A	8: 19,293,407	L12Q	probably null	Het
Defb7	G	T	8: 19,495,170		probably null	Het
Dhx35	T	A	2: 158,840,620	M491K	probably damaging	Het
Dnah17	T	C	11: 118,074,434	S2261G	possibly damaging	Het
Dnah5	A	C	15: 28,263,679	E853D	probably benign	Het
Dner	C	A	1: 84,583,053	A23S	probably benign	Het
Dock5	A	C	14: 67,819,641	S539A	probably benign	Het
Dsg2	T	A	18: 20,583,042	F317I	probably benign	Het
Enox1	A	T	14: 77,699,198	I539F	possibly damaging	Het
Eogt	G	A	6: 97,135,284		probably benign	Het
Fbxo22	A	G	9: 55,223,346	T300A	probably benign	Het
Fes	T	C	7: 80,384,005	D166G	probably damaging	Het
Fn1	A	G	1: 71,609,653	S1366P	probably damaging	Het
Fndc3a	A	T	14: 72,540,495		probably benign	Het
Foxh1	T	C	15: 76,669,010	H168R	probably benign	Het
Galnt14	T	G	17: 73,574,984		probably benign	Het
Gdf6	A	G	4: 9,844,482	D2G	probably damaging	Het
Gp6	C	A	7: 4,370,184	A247S	probably benign	Het
Gp6	G	C	7: 4,371,627	P232A	probably benign	Het
Grin2c	A	G	11: 115,251,134	Y820H	probably damaging	Het
Gtf2h4	T	C	17: 35,670,448	T198A	possibly damaging	Het
Helz	T	C	11: 107,672,948		probably benign	Het
Htr1d	A	G	4: 136,443,000	E180G	probably benign	Het
Igsf10	A	G	3: 59,326,008	V1768A	probably benign	Het
Ints10	A	T	8: 68,827,302	T694S	probably damaging	Het
Krt81	C	A	15: 101,463,627	R24L	possibly damaging	Het
Lipc	T	A	9: 70,820,427	Y131F	probably damaging	Het
Litaf	G	T	16: 10,966,511	T45K	probably damaging	Het
Lmo7	A	T	14: 101,887,193	R363*	probably null	Het
Lrrc37a	A	T	11: 103,500,913	Y1229N	probably benign	Het
Man2a2	C	T	7: 80,358,276	A943T	probably damaging	Het
Mtor	A	G	4: 148,480,923	Y1030C	probably damaging	Het
Naalad2	G	T	9: 18,351,447	Y384*	probably null	Het
Nat2	C	T	8: 67,501,726	Q163*	probably null	Het
Nell2	A	G	15: 95,431,681		probably benign	Het
Nphp3	C	T	9: 104,037,348	H102Y	possibly damaging	Het
Olfr1383	A	T	11: 49,524,134	H137L	possibly damaging	Het
Olfr1442	C	T	19: 12,674,757	T184I	probably benign	Het
Olfr686	A	T	7: 105,203,659	M228K	probably benign	Het
Olr1	T	C	6: 129,488,906	S46G	possibly damaging	Het
Parg	C	A	14: 32,202,433	A63E	probably damaging	Het
Pik3cg	A	G	12: 32,195,715		probably benign	Het
Ripk4	A	G	16: 97,743,561	C629R	probably benign	Het
Rnf145	A	G	11: 44,564,151	T620A	probably benign	Het
Samd9l	T	G	6: 3,376,031	D410A	possibly damaging	Het
Serpinb9f	A	T	13: 33,327,951		probably benign	Het
Slc19a1	T	C	10: 77,042,165	I178T	probably benign	Het
Slco1b2	A	T	6: 141,671,111	Y390F	probably benign	Het
Speg	A	G	1: 75,385,032	E230G	possibly damaging	Het
Tbc1d9	C	A	8: 83,264,837		probably benign	Het
Tmem131l	G	A	3: 83,940,587	Q324*	probably null	Het
Trf	A	G	9: 103,226,956		probably benign	Het
Trp53	T	G	11: 69,588,679	Y202D	probably damaging	Het
Trpv1	T	A	11: 73,253,272	M618K	probably damaging	Het
Trrap	C	A	5: 144,822,761	Y2250*	probably null	Het
Ttc3	A	G	16: 94,385,322		probably benign	Het
Ubtfl1	T	G	9: 18,409,787	S204A	probably benign	Het
Uck2	A	T	1: 167,227,771	Y203N	probably damaging	Het
Utrn	A	T	10: 12,686,465	L1280*	probably null	Het
Vmn1r178	A	T	7: 23,894,184	H146L	possibly damaging	Het
Vmn2r100	C	A	17: 19,522,120	P252Q	possibly damaging	Het
Vmn2r108	T	C	17: 20,471,635	M209V	probably benign	Het
Vmn2r9	G	A	5: 108,843,125	T790I	probably damaging	Het
Vmn2r94	C	A	17: 18,243,604	R808L	probably benign	Het
Zbtb7c	A	T	18: 76,136,891	S17C	probably damaging	Het
Zfp811	C	T	17: 32,797,764	R434Q	probably damaging	Het
Zkscan6	A	T	11: 65,814,863		probably benign	Het

Other mutations in Abcd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02075:Abcd4	APN	12	84608804	critical splice donor site	probably null
IGL02103:Abcd4	APN	12	84612364	missense	probably benign	0.00
IGL02892:Abcd4	APN	12	84604997	nonsense	probably null
R0128:Abcd4	UTSW	12	84612352	missense	possibly damaging	0.89
R0144:Abcd4	UTSW	12	84605965	critical splice acceptor site	probably null
R0866:Abcd4	UTSW	12	84611733	missense	probably damaging	1.00
R0942:Abcd4	UTSW	12	84612828	missense	probably damaging	0.96
R1770:Abcd4	UTSW	12	84615100	missense	probably benign	0.08
R1796:Abcd4	UTSW	12	84615382	missense	probably benign	0.09
R2113:Abcd4	UTSW	12	84609016	nonsense	probably null
R3713:Abcd4	UTSW	12	84611759	missense	probably benign	0.43
R3714:Abcd4	UTSW	12	84611759	missense	probably benign	0.43
R3715:Abcd4	UTSW	12	84611759	missense	probably benign	0.43
R5308:Abcd4	UTSW	12	84603293	critical splice donor site	probably null
R5572:Abcd4	UTSW	12	84606276	missense	probably benign	0.04
R5632:Abcd4	UTSW	12	84617302	missense	probably benign	0.00
R5695:Abcd4	UTSW	12	84613971	missense	probably damaging	1.00
R6111:Abcd4	UTSW	12	84615114	missense	probably damaging	1.00
R6538:Abcd4	UTSW	12	84611761	missense	probably benign	0.12
R7035:Abcd4	UTSW	12	84615349	missense	probably damaging	1.00
R7139:Abcd4	UTSW	12	84606298	missense	probably benign
R7368:Abcd4	UTSW	12	84612865	missense	possibly damaging	0.56
R7374:Abcd4	UTSW	12	84606243	nonsense	probably null
R7601:Abcd4	UTSW	12	84613945	missense	possibly damaging	0.93
R7663:Abcd4	UTSW	12	84606129	missense	probably damaging	1.00
R7990:Abcd4	UTSW	12	84604388	splice site	probably null
R8286:Abcd4	UTSW	12	84603146	missense	probably benign	0.04
R8312:Abcd4	UTSW	12	84615416	missense	probably damaging	1.00
R8331:Abcd4	UTSW	12	84603952	missense	probably damaging	1.00
R8469:Abcd4	UTSW	12	84612416	missense	probably damaging	1.00
R8486:Abcd4	UTSW	12	84603978	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAAAGATGAGCCTCCCTTGGACCC -3'
(R):5'- TGAGATTAAGGAGACCGTGTCCCTG -3'

Sequencing Primer
(F):5'- CTATGTGGGAGACTCTGGGTAAAC -3'
(R):5'- TGTGCAGAGCTGACTCAGG -3'

Posted On

2013-04-11