Mutagenetix > Incidental Mutation

Incidental Mutation 'R1838:Pgm3'

205516

Institutional Source

Beutler Lab

Gene Symbol

Pgm3

Ensembl Gene

ENSMUSG00000056131

Gene Name

phosphoglucomutase 3

Synonyms

Pgm-3, GlcNAc-P mutase, 2810473H05Rik

MMRRC Submission

039865-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.956) question?

Stock #

R1838 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

86554377-86571842 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 86569233 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 123 (V123I)

Ref Sequence

ENSEMBL: ENSMUSP00000070871 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034988] [ENSMUST00000070064] [ENSMUST00000072585] [ENSMUST00000179212] [ENSMUST00000185566]

AlphaFold

Q9CYR6

PDB Structure

Solution structure of the C-terminal domain of mouse phosphoacetylglucosamine mutase (PAGM) [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000034988

SMART Domains

Protein: ENSMUSP00000034988
Gene: ENSMUSG00000032417

Domain	Start	End	E-Value	Type
RWD	14	134	1.22e-25	SMART
Pfam:DUF1115	160	283	7.7e-30	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000070064
AA Change: V123I

PolyPhen 2 Score 0.032 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000070871
Gene: ENSMUSG00000056131
AA Change: V123I

Domain	Start	End	E-Value	Type
Pfam:PGM_PMM_I	44	102	6.5e-9	PFAM
Pfam:PGM_PMM_I	96	174	4.3e-9	PFAM
Pfam:PGM_PMM_IV	443	528	8.9e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000072585
AA Change: V123I

PolyPhen 2 Score 0.018 (Sensitivity: 0.95; Specificity: 0.80)

SMART Domains

Protein: ENSMUSP00000072390
Gene: ENSMUSG00000056131
AA Change: V123I

Domain	Start	End	E-Value	Type
Pfam:PGM_PMM_I	44	102	2.5e-10	PFAM
Pfam:PGM_PMM_I	95	175	3.6e-11	PFAM
Pfam:PGM_PMM_II	181	291	9.4e-14	PFAM
SCOP:d3pmga3	298	374	1e-8	SMART
Pfam:PGM_PMM_IV	383	487	8.1e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000179212

SMART Domains

Protein: ENSMUSP00000137392
Gene: ENSMUSG00000032417

Domain	Start	End	E-Value	Type
RWD	14	134	1.22e-25	SMART
Pfam:DUF1115	158	282	1.1e-15	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000185566

SMART Domains

Protein: ENSMUSP00000139930
Gene: ENSMUSG00000032417

Domain	Start	End	E-Value	Type
RWD	14	134	1.22e-25	SMART
Pfam:DUF1115	160	283	7.7e-30	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000186193

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187251

Coding Region Coverage

1x: 97.4%
3x: 96.9%
10x: 95.2%
20x: 92.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the phosphohexose mutase family. The encoded protein mediates both glycogen formation and utilization by catalyzing the interconversion of glucose-1-phosphate and glucose-6-phosphate. A non-synonymous single nucleotide polymorphism in this gene may play a role in resistance to diabetic nephropathy and neuropathy. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Dec 2010]
PHENOTYPE: Mice homozygous for a hypomorphic allele exhibit male infertility, anemia, leukopenia, thrombocytopenia, abnormal pancreatic and salivary gland morphology, and splenomegaly. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 88 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A630073D07Rik	T	C	6: 132,626,727	D22G	unknown	Het
Abca4	G	A	3: 122,128,305	R1170K	probably benign	Het
Adam28	T	C	14: 68,639,210	N197S	possibly damaging	Het
Adamtsl3	G	T	7: 82,493,373	R267L	probably damaging	Het
Adgrb2	A	T	4: 130,010,231	T717S	probably benign	Het
Adgrb3	A	G	1: 25,084,270	S1417P	probably damaging	Het
Afg3l2	A	T	18: 67,414,172	V561D	probably damaging	Het
Atp13a2	T	A	4: 140,994,332	Y244*	probably null	Het
BB014433	C	G	8: 15,042,629	V75L	unknown	Het
Btnl6	T	A	17: 34,515,542	D82V	probably damaging	Het
Ccdc178	A	G	18: 22,067,638	Y421H	probably damaging	Het
Cdc123	A	T	2: 5,794,891		probably null	Het
Cdhr5	C	T	7: 141,272,603	V367I	possibly damaging	Het
Celsr3	A	G	9: 108,829,906	H1196R	probably benign	Het
Chd8	T	C	14: 52,204,883	S2077G	probably benign	Het
Col6a5	G	A	9: 105,864,833	H2296Y	probably benign	Het
Ctnna2	T	C	6: 77,845,542	D26G	probably damaging	Het
Ctr9	G	T	7: 111,052,303	R910L	possibly damaging	Het
Cyp2t4	G	T	7: 27,158,416	R455L	possibly damaging	Het
Cyp3a13	A	T	5: 137,911,632		probably null	Het
Dennd3	T	C	15: 73,565,100	S1059P	probably damaging	Het
Dennd4c	A	G	4: 86,825,178	T1135A	probably benign	Het
Dnah7b	T	C	1: 46,116,177	V295A	probably benign	Het
Dnah7b	C	A	1: 46,277,105	T3126K	probably damaging	Het
Ehbp1l1	C	T	19: 5,717,691	E1195K	probably benign	Het
Exoc6b	T	A	6: 84,853,678	I447L	probably benign	Het
Glt1d1	G	A	5: 127,678,129	V202I	probably benign	Het
Grk1	T	C	8: 13,416,155	V533A	possibly damaging	Het
Gsdma3	C	T	11: 98,629,858	A105V	probably benign	Het
Gzma	T	A	13: 113,095,984	I131F	probably damaging	Het
Helq	A	T	5: 100,771,879	L35*	probably null	Het
Hnrnpll	T	C	17: 80,038,623	N403S	probably damaging	Het
Hsf5	A	G	11: 87,636,055	K518E	probably benign	Het
Ighe	T	A	12: 113,271,850	H258L	unknown	Het
Il6ra	T	C	3: 89,890,272	D96G	probably benign	Het
Ints13	C	T	6: 146,566,611	A129T	possibly damaging	Het
Ipo7	T	A	7: 110,042,109	H345Q	probably damaging	Het
Kcna2	A	T	3: 107,104,512	E136D	probably benign	Het
Kif5a	G	A	10: 127,236,815	Q702*	probably null	Het
Klhdc7a	G	T	4: 139,967,070	P189T	probably benign	Het
Krtap4-9	A	G	11: 99,785,396		probably benign	Het
Lamc3	T	C	2: 31,925,582	S1097P	possibly damaging	Het
Ldlrad2	A	T	4: 137,572,170	N114K	probably benign	Het
Lrfn1	A	T	7: 28,459,768	I371L	probably damaging	Het
Lrwd1	A	G	5: 136,132,388	V240A	probably benign	Het
Lypd1	A	T	1: 125,873,371		probably benign	Het
Magi2	A	T	5: 20,465,827	T163S	probably damaging	Het
Man2c1	A	G	9: 57,137,337	N354S	probably benign	Het
Map3k13	T	C	16: 21,914,189	Y514H	possibly damaging	Het
Med15	T	C	16: 17,653,562	D577G	probably benign	Het
Mroh4	A	T	15: 74,616,113	M320K	probably benign	Het
Ms4a10	T	A	19: 10,964,047	D186V	possibly damaging	Het
Myh7	T	C	14: 54,973,180	N1725S	possibly damaging	Het
Myo5c	A	T	9: 75,273,553	R741S	probably damaging	Het
Naip6	T	C	13: 100,316,136	D139G	probably damaging	Het
Nat6	G	A	9: 107,583,017	R37H	possibly damaging	Het
Olfr1252	A	T	2: 89,721,709	M134K	probably damaging	Het
Olfr1370	A	T	13: 21,072,425	L292*	probably null	Het
Olfr229	A	T	9: 39,909,841	I13F	possibly damaging	Het
Olfr982	A	T	9: 40,074,309	M5L	probably benign	Het
Pcdhb3	A	G	18: 37,301,317	D112G	probably benign	Het
Pdpr	C	A	8: 111,134,734	P787T	probably damaging	Het
Pms1	A	C	1: 53,192,098		probably null	Het
Prl2b1	A	G	13: 27,388,566	S14P	possibly damaging	Het
Prune2	T	A	19: 17,199,878	W212R	probably damaging	Het
Rabgef1	A	G	5: 130,213,021	E422G	probably benign	Het
Ralyl	A	G	3: 14,143,412	E204G	probably damaging	Het
Rbpms2	ACTGCTGCTGCTGCTGC	ACTGCTGCTGCTGCTGCTGC	9: 65,651,666		probably benign	Het
Rbpms2	TGCCGCCGCC	TGCCGCCGCCGCC	9: 65,651,680		probably benign	Het
Rit1	C	G	3: 88,729,170	T127S	probably damaging	Het
Slc16a7	C	T	10: 125,231,198	V191M	probably damaging	Het
Slc34a2	A	T	5: 53,058,436	H63L	probably benign	Het
Smpd4	G	A	16: 17,642,302		probably null	Het
Sp3	A	G	2: 72,938,176	S748P	possibly damaging	Het
Spata31d1b	G	A	13: 59,715,857	C273Y	probably benign	Het
Spata31d1b	G	A	13: 59,717,465	R809K	probably benign	Het
Tmco5	A	T	2: 116,880,879	E90V	probably damaging	Het
Tnxb	A	T	17: 34,678,910	D844V	probably damaging	Het
Tpi1	T	C	6: 124,814,152	T41A	probably benign	Het
Ttn	T	C	2: 76,727,192	I29853V	probably damaging	Het
Vmn2r26	C	T	6: 124,024,771	T5I	probably benign	Het
Wdr95	A	G	5: 149,599,366	D663G	probably benign	Het
Zbtb39	T	C	10: 127,742,700	F381S	probably damaging	Het
Zfp523	T	A	17: 28,194,993	I34N	probably damaging	Het
Zfp646	T	A	7: 127,879,739	Y363N	probably damaging	Het
Zfp712	A	C	13: 67,042,047	C139G	probably damaging	Het
Zfp958	A	G	8: 4,628,590	H205R	probably damaging	Het
Zfp974	G	A	7: 27,910,356	P648L	possibly damaging	Het

Other mutations in Pgm3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01296:Pgm3	APN	9	86561879	missense	probably damaging	0.96
IGL01865:Pgm3	APN	9	86555318	missense	possibly damaging	0.85
IGL02800:Pgm3	APN	9	86555378	missense	possibly damaging	0.94
R6592_Pgm3_648	UTSW	9	86559443	missense	possibly damaging	0.87
R7274_Pgm3_459	UTSW	9	86562597	missense	probably damaging	1.00
R0038:Pgm3	UTSW	9	86564673	splice site	probably benign
R0038:Pgm3	UTSW	9	86564673	splice site	probably benign
R0266:Pgm3	UTSW	9	86567533	missense	probably benign	0.00
R0536:Pgm3	UTSW	9	86567536	missense	possibly damaging	0.83
R0617:Pgm3	UTSW	9	86556190	critical splice donor site	probably null
R1499:Pgm3	UTSW	9	86570287	missense	probably benign	0.01
R1780:Pgm3	UTSW	9	86556204	missense	probably damaging	1.00
R1882:Pgm3	UTSW	9	86565690	missense	possibly damaging	0.72
R1920:Pgm3	UTSW	9	86558478	missense	possibly damaging	0.47
R2095:Pgm3	UTSW	9	86556341	missense	probably damaging	0.99
R2378:Pgm3	UTSW	9	86562667	missense	probably damaging	0.97
R2679:Pgm3	UTSW	9	86569321	missense	probably benign	0.32
R3021:Pgm3	UTSW	9	86567535	missense	possibly damaging	0.95
R3686:Pgm3	UTSW	9	86559510	missense	probably benign	0.37
R4490:Pgm3	UTSW	9	86561840	missense	probably damaging	1.00
R4651:Pgm3	UTSW	9	86558470	missense	probably benign	0.01
R4652:Pgm3	UTSW	9	86558470	missense	probably benign	0.01
R4718:Pgm3	UTSW	9	86570395	missense	probably benign	0.00
R4883:Pgm3	UTSW	9	86569325	missense	probably damaging	1.00
R4940:Pgm3	UTSW	9	86559476	missense	probably damaging	1.00
R4973:Pgm3	UTSW	9	86562679	missense	probably benign
R4990:Pgm3	UTSW	9	86558412	missense	probably damaging	0.97
R5357:Pgm3	UTSW	9	86556257	nonsense	probably null
R5870:Pgm3	UTSW	9	86570361	missense	probably damaging	0.99
R6592:Pgm3	UTSW	9	86559443	missense	possibly damaging	0.87
R6807:Pgm3	UTSW	9	86556502	splice site	probably null
R7152:Pgm3	UTSW	9	86567540	missense	probably benign	0.13
R7274:Pgm3	UTSW	9	86562597	missense	probably damaging	1.00
R8112:Pgm3	UTSW	9	86564775	missense	probably benign
R8195:Pgm3	UTSW	9	86570321	missense	probably damaging	1.00
R9115:Pgm3	UTSW	9	86565609	missense	probably damaging	0.98
R9224:Pgm3	UTSW	9	86556362	missense	probably benign	0.15
R9336:Pgm3	UTSW	9	86555360	missense	probably benign
R9422:Pgm3	UTSW	9	86561885	missense	probably damaging	0.97
R9705:Pgm3	UTSW	9	86555361	missense	probably benign
X0028:Pgm3	UTSW	9	86569355	missense	probably damaging	1.00
Z1088:Pgm3	UTSW	9	86564707	missense	probably damaging	0.96

Predicted Primers

PCR Primer
(F):5'- GCTTGAGGAGATAGAGGCTTCC -3'
(R):5'- TGAACGACAGCAAAGGTTTG -3'

Sequencing Primer
(F):5'- CGTTAAAACTGTGGGGACTCC -3'
(R):5'- CGACAGCAAAGGTTTGTTTCTC -3'

Posted On

2014-06-23