Incidental Mutation 'R1839:Chd8'
| ID |
205635 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Chd8
|
| Ensembl Gene |
ENSMUSG00000053754 |
| Gene Name |
chromodomain helicase DNA binding protein 8 |
| Synonyms |
5830451P18Rik, Duplin |
| MMRRC Submission |
045015-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R1839 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
14 |
| Chromosomal Location |
52435608-52495237 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 52442340 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Glycine
at position 2077
(S2077G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000142890
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000089752]
[ENSMUST00000149975]
[ENSMUST00000200169]
[ENSMUST00000227897]
|
| AlphaFold |
Q09XV5 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000089752
AA Change: S2077G
PolyPhen 2
Score 0.108 (Sensitivity: 0.93; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000087184
Gene: ENSMUSG00000053754
AA Change: S2077G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
255 |
272 |
N/A |
INTRINSIC |
|
low complexity region
|
340 |
374 |
N/A |
INTRINSIC |
|
low complexity region
|
404 |
437 |
N/A |
INTRINSIC |
|
low complexity region
|
463 |
477 |
N/A |
INTRINSIC |
|
low complexity region
|
497 |
534 |
N/A |
INTRINSIC |
|
low complexity region
|
588 |
607 |
N/A |
INTRINSIC |
|
CHROMO
|
642 |
708 |
1.8e-9 |
SMART |
|
CHROMO
|
724 |
782 |
1.55e-4 |
SMART |
|
DEXDc
|
809 |
1011 |
4.13e-37 |
SMART |
|
HELICc
|
1165 |
1249 |
1.01e-22 |
SMART |
|
low complexity region
|
1335 |
1345 |
N/A |
INTRINSIC |
|
low complexity region
|
1422 |
1441 |
N/A |
INTRINSIC |
|
Blast:DEXDc
|
1460 |
1505 |
4e-16 |
BLAST |
|
low complexity region
|
1579 |
1590 |
N/A |
INTRINSIC |
|
low complexity region
|
1703 |
1714 |
N/A |
INTRINSIC |
|
low complexity region
|
1770 |
1785 |
N/A |
INTRINSIC |
|
low complexity region
|
1887 |
1903 |
N/A |
INTRINSIC |
|
low complexity region
|
2063 |
2107 |
N/A |
INTRINSIC |
|
low complexity region
|
2222 |
2239 |
N/A |
INTRINSIC |
|
BRK
|
2312 |
2356 |
1.34e-19 |
SMART |
|
BRK
|
2381 |
2421 |
1.94e-2 |
SMART |
|
low complexity region
|
2452 |
2472 |
N/A |
INTRINSIC |
|
low complexity region
|
2494 |
2510 |
N/A |
INTRINSIC |
|
low complexity region
|
2514 |
2529 |
N/A |
INTRINSIC |
|
low complexity region
|
2538 |
2550 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000134329
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136528
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000145404
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147309
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147827
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000149975
AA Change: S737G
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| SMART Domains |
Protein: ENSMUSP00000122995
Gene: ENSMUSG00000053754
AA Change: S737G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
74 |
93 |
N/A |
INTRINSIC |
|
Blast:DEXDc
|
112 |
235 |
9e-40 |
BLAST |
|
low complexity region
|
239 |
250 |
N/A |
INTRINSIC |
|
low complexity region
|
363 |
374 |
N/A |
INTRINSIC |
|
low complexity region
|
430 |
445 |
N/A |
INTRINSIC |
|
Blast:SANT
|
456 |
515 |
1e-29 |
BLAST |
|
low complexity region
|
547 |
563 |
N/A |
INTRINSIC |
|
low complexity region
|
723 |
767 |
N/A |
INTRINSIC |
|
low complexity region
|
882 |
899 |
N/A |
INTRINSIC |
|
BRK
|
972 |
1016 |
1.34e-19 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000200169
AA Change: S2077G
PolyPhen 2
Score 0.108 (Sensitivity: 0.93; Specificity: 0.86)
|
| SMART Domains |
Protein: ENSMUSP00000142890
Gene: ENSMUSG00000053754
AA Change: S2077G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
255 |
272 |
N/A |
INTRINSIC |
|
low complexity region
|
340 |
374 |
N/A |
INTRINSIC |
|
low complexity region
|
404 |
437 |
N/A |
INTRINSIC |
|
low complexity region
|
463 |
477 |
N/A |
INTRINSIC |
|
low complexity region
|
497 |
534 |
N/A |
INTRINSIC |
|
low complexity region
|
588 |
607 |
N/A |
INTRINSIC |
|
CHROMO
|
642 |
708 |
1.8e-9 |
SMART |
|
CHROMO
|
724 |
782 |
1.55e-4 |
SMART |
|
DEXDc
|
809 |
1011 |
4.13e-37 |
SMART |
|
HELICc
|
1165 |
1249 |
1.01e-22 |
SMART |
|
low complexity region
|
1335 |
1345 |
N/A |
INTRINSIC |
|
low complexity region
|
1422 |
1441 |
N/A |
INTRINSIC |
|
Blast:DEXDc
|
1460 |
1505 |
4e-16 |
BLAST |
|
low complexity region
|
1579 |
1590 |
N/A |
INTRINSIC |
|
low complexity region
|
1703 |
1714 |
N/A |
INTRINSIC |
|
low complexity region
|
1770 |
1785 |
N/A |
INTRINSIC |
|
low complexity region
|
1887 |
1903 |
N/A |
INTRINSIC |
|
low complexity region
|
2063 |
2107 |
N/A |
INTRINSIC |
|
low complexity region
|
2222 |
2239 |
N/A |
INTRINSIC |
|
BRK
|
2312 |
2356 |
1.34e-19 |
SMART |
|
BRK
|
2381 |
2421 |
1.94e-2 |
SMART |
|
low complexity region
|
2452 |
2472 |
N/A |
INTRINSIC |
|
low complexity region
|
2494 |
2510 |
N/A |
INTRINSIC |
|
low complexity region
|
2514 |
2529 |
N/A |
INTRINSIC |
|
low complexity region
|
2538 |
2550 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000180857
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000175303
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227448
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000226681
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000227897
|
| Meta Mutation Damage Score |
0.0693 |
| Coding Region Coverage |
- 1x: 97.4%
- 3x: 96.7%
- 10x: 94.7%
- 20x: 90.6%
|
| Validation Efficiency |
98% (90/92) |
| MGI Phenotype |
FUNCTION: This gene encodes a member of the chromodomain-helicase-DNA binding protein family, which is characterized by a SNF2-like domain and two chromatin organization modifier domains. The encoded protein also contains brahma and kismet domains, which is common to the subfamily of chromodomain-helicase-DNA binding proteins to which this protein belongs. In mammals, this gene has been shown to function in several processes including transcriptional regulation, epigenetic remodeling, promotion of cell proliferation, and regulation of RNA synthesis. Knockout of this gene causes early embryonic lethality due to widespread apoptosis. Heterozygous loss of function mutations result in autism spectrum disorder-like behaviors that include increased anxiety, repetitive behavior, and altered social behavior. [provided by RefSeq, Dec 2016]
PHENOTYPE: Homozygous null embryos are growth retarded starting at E5.5 and exhibit developmental arrest at E6.5. Mutants develop into an egg cylinder but do not form a primitive streak or mesoderm and exhibit increased apoptosis at E7.5. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 84 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700006A11Rik |
T |
C |
3: 124,203,369 (GRCm39) |
T403A |
probably damaging |
Het |
| Acat3 |
T |
A |
17: 13,147,493 (GRCm39) |
R175* |
probably null |
Het |
| Adam1b |
C |
A |
5: 121,639,104 (GRCm39) |
C647F |
probably damaging |
Het |
| Adam28 |
T |
C |
14: 68,876,659 (GRCm39) |
N197S |
possibly damaging |
Het |
| Adcy2 |
C |
T |
13: 68,837,380 (GRCm39) |
|
probably null |
Het |
| Adcy5 |
A |
T |
16: 35,069,310 (GRCm39) |
N426I |
probably damaging |
Het |
| Adgre1 |
T |
C |
17: 57,748,299 (GRCm39) |
S500P |
probably benign |
Het |
| Aloxe3 |
A |
G |
11: 69,020,911 (GRCm39) |
Y212C |
probably damaging |
Het |
| Ap3d1 |
A |
G |
10: 80,562,942 (GRCm39) |
S180P |
probably damaging |
Het |
| Arhgap20 |
C |
T |
9: 51,760,626 (GRCm39) |
R790W |
probably damaging |
Het |
| Atp8b4 |
C |
A |
2: 126,203,702 (GRCm39) |
A757S |
possibly damaging |
Het |
| Begain |
G |
A |
12: 109,001,249 (GRCm39) |
|
probably benign |
Het |
| Ccdc141 |
T |
C |
2: 76,842,009 (GRCm39) |
E1474G |
probably benign |
Het |
| Ccdc88b |
A |
G |
19: 6,831,477 (GRCm39) |
|
probably benign |
Het |
| Ccnk |
A |
G |
12: 108,161,333 (GRCm39) |
T195A |
probably damaging |
Het |
| Cd55b |
C |
A |
1: 130,341,842 (GRCm39) |
C265F |
probably damaging |
Het |
| Celsr3 |
A |
G |
9: 108,707,105 (GRCm39) |
H1196R |
probably benign |
Het |
| Cenpt |
T |
C |
8: 106,575,646 (GRCm39) |
S190G |
possibly damaging |
Het |
| Col6a5 |
G |
A |
9: 105,742,032 (GRCm39) |
H2296Y |
probably benign |
Het |
| Cxxc4 |
C |
A |
3: 133,946,414 (GRCm39) |
H332N |
probably damaging |
Het |
| Cyp24a1 |
T |
C |
2: 170,338,661 (GRCm39) |
I12V |
probably benign |
Het |
| Cyp3a57 |
T |
A |
5: 145,318,111 (GRCm39) |
L364Q |
probably damaging |
Het |
| Ddi2 |
T |
C |
4: 141,440,837 (GRCm39) |
I47V |
probably benign |
Het |
| Ddx5 |
A |
T |
11: 106,675,723 (GRCm39) |
D322E |
probably benign |
Het |
| Dhx40 |
A |
G |
11: 86,680,123 (GRCm39) |
C405R |
possibly damaging |
Het |
| Emc1 |
T |
C |
4: 139,087,796 (GRCm39) |
F100S |
probably damaging |
Het |
| Exoc2 |
T |
C |
13: 31,090,480 (GRCm39) |
|
probably benign |
Het |
| Gm10110 |
A |
T |
14: 90,135,272 (GRCm39) |
|
noncoding transcript |
Het |
| Gm17332 |
T |
C |
11: 31,132,386 (GRCm39) |
H26R |
possibly damaging |
Het |
| Gna12 |
T |
C |
5: 140,748,367 (GRCm39) |
N183S |
probably benign |
Het |
| Gpx6 |
A |
G |
13: 21,496,497 (GRCm39) |
N24D |
probably benign |
Het |
| Gsdma3 |
C |
T |
11: 98,520,684 (GRCm39) |
A105V |
probably benign |
Het |
| Hsd3b5 |
T |
C |
3: 98,527,044 (GRCm39) |
Y134C |
probably benign |
Het |
| Ifi213 |
T |
C |
1: 173,417,166 (GRCm39) |
I415M |
probably damaging |
Het |
| Ints9 |
C |
A |
14: 65,253,979 (GRCm39) |
P278T |
probably damaging |
Het |
| Krt79 |
C |
T |
15: 101,846,373 (GRCm39) |
E192K |
possibly damaging |
Het |
| Lrrk2 |
A |
G |
15: 91,567,337 (GRCm39) |
N132S |
probably benign |
Het |
| Ltn1 |
T |
A |
16: 87,213,152 (GRCm39) |
K470* |
probably null |
Het |
| Magi2 |
A |
T |
5: 20,670,825 (GRCm39) |
T163S |
probably damaging |
Het |
| Mcm9 |
A |
G |
10: 53,417,649 (GRCm39) |
M18T |
probably damaging |
Het |
| Med12l |
A |
G |
3: 58,975,740 (GRCm39) |
T212A |
probably benign |
Het |
| Mfhas1 |
T |
C |
8: 36,058,012 (GRCm39) |
L829P |
possibly damaging |
Het |
| Mgme1 |
T |
A |
2: 144,121,407 (GRCm39) |
C288S |
probably benign |
Het |
| Muc4 |
G |
C |
16: 32,753,919 (GRCm38) |
R1265P |
probably benign |
Het |
| Myh7 |
T |
C |
14: 55,210,637 (GRCm39) |
N1725S |
possibly damaging |
Het |
| Naa80 |
G |
A |
9: 107,460,216 (GRCm39) |
R37H |
possibly damaging |
Het |
| Nme4 |
A |
T |
17: 26,311,071 (GRCm39) |
W165R |
probably damaging |
Het |
| Nup205 |
T |
A |
6: 35,196,649 (GRCm39) |
D1128E |
probably benign |
Het |
| Or2t48 |
A |
T |
11: 58,420,199 (GRCm39) |
Y204* |
probably null |
Het |
| Or5ae2 |
T |
C |
7: 84,505,756 (GRCm39) |
Y60H |
probably damaging |
Het |
| Pcdh1 |
T |
C |
18: 38,332,538 (GRCm39) |
D155G |
possibly damaging |
Het |
| Pex12 |
A |
T |
11: 83,188,648 (GRCm39) |
S116T |
probably damaging |
Het |
| Plekhh1 |
C |
T |
12: 79,125,731 (GRCm39) |
|
probably benign |
Het |
| Plekhh3 |
A |
G |
11: 101,054,426 (GRCm39) |
|
probably benign |
Het |
| Pnpt1 |
T |
C |
11: 29,104,342 (GRCm39) |
M572T |
possibly damaging |
Het |
| Ppp1r12b |
T |
C |
1: 134,765,719 (GRCm39) |
R667G |
probably benign |
Het |
| Rbpms2 |
ACTGCTGCTGCTGCTGC |
ACTGCTGCTGCTGCTGCTGC |
9: 65,558,948 (GRCm39) |
|
probably benign |
Het |
| Rgs14 |
T |
C |
13: 55,530,651 (GRCm39) |
|
probably benign |
Het |
| Rhbdf2 |
A |
T |
11: 116,491,017 (GRCm39) |
V645E |
possibly damaging |
Het |
| Robo3 |
A |
G |
9: 37,333,623 (GRCm39) |
V696A |
probably benign |
Het |
| Sall1 |
A |
G |
8: 89,755,344 (GRCm39) |
F1212L |
possibly damaging |
Het |
| Sdc4 |
T |
C |
2: 164,270,932 (GRCm39) |
E109G |
probably benign |
Het |
| Serpind1 |
G |
T |
16: 17,160,856 (GRCm39) |
R462L |
probably damaging |
Het |
| Smad9 |
CTTT |
CTT |
3: 54,696,600 (GRCm39) |
|
probably benign |
Het |
| Sstr4 |
C |
A |
2: 148,237,453 (GRCm39) |
N21K |
probably benign |
Het |
| Tap1 |
C |
T |
17: 34,407,083 (GRCm39) |
A77V |
possibly damaging |
Het |
| Thap4 |
T |
C |
1: 93,678,009 (GRCm39) |
E259G |
probably benign |
Het |
| Thra |
A |
G |
11: 98,646,969 (GRCm39) |
N30S |
probably benign |
Het |
| Tmem207 |
A |
T |
16: 26,343,571 (GRCm39) |
V27E |
possibly damaging |
Het |
| Top3a |
A |
G |
11: 60,644,714 (GRCm39) |
V305A |
probably damaging |
Het |
| Trim59 |
A |
T |
3: 68,944,971 (GRCm39) |
I123K |
probably damaging |
Het |
| Ttn |
T |
C |
2: 76,691,839 (GRCm39) |
|
probably benign |
Het |
| Ubac1 |
T |
A |
2: 25,897,750 (GRCm39) |
E290V |
possibly damaging |
Het |
| Unc13b |
T |
C |
4: 43,258,308 (GRCm39) |
|
probably benign |
Het |
| Uri1 |
A |
T |
7: 37,666,814 (GRCm39) |
D206E |
probably benign |
Het |
| Utp4 |
A |
G |
8: 107,640,086 (GRCm39) |
H465R |
probably benign |
Het |
| Uvssa |
T |
C |
5: 33,547,096 (GRCm39) |
S221P |
probably benign |
Het |
| Vmn1r39 |
T |
C |
6: 66,782,217 (GRCm39) |
|
probably null |
Het |
| Vps39 |
A |
T |
2: 120,155,878 (GRCm39) |
L514H |
probably damaging |
Het |
| Vps72 |
G |
A |
3: 95,026,529 (GRCm39) |
R158Q |
possibly damaging |
Het |
| Wdr59 |
T |
C |
8: 112,211,972 (GRCm39) |
D366G |
probably benign |
Het |
| Zfp366 |
C |
A |
13: 99,365,000 (GRCm39) |
Q54K |
probably damaging |
Het |
| Zfp523 |
T |
A |
17: 28,413,967 (GRCm39) |
I34N |
probably damaging |
Het |
| Zfp974 |
G |
A |
7: 27,609,781 (GRCm39) |
P648L |
possibly damaging |
Het |
|
| Other mutations in Chd8 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00572:Chd8
|
APN |
14 |
52,463,595 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL00694:Chd8
|
APN |
14 |
52,455,427 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01011:Chd8
|
APN |
14 |
52,468,989 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
IGL01022:Chd8
|
APN |
14 |
52,474,450 (GRCm39) |
missense |
probably benign |
|
|
IGL01066:Chd8
|
APN |
14 |
52,455,223 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01083:Chd8
|
APN |
14 |
52,458,877 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01313:Chd8
|
APN |
14 |
52,448,032 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01396:Chd8
|
APN |
14 |
52,442,044 (GRCm39) |
unclassified |
probably benign |
|
|
IGL01476:Chd8
|
APN |
14 |
52,442,947 (GRCm39) |
missense |
probably benign |
0.32 |
|
IGL01731:Chd8
|
APN |
14 |
52,450,111 (GRCm39) |
missense |
probably benign |
0.12 |
|
IGL01895:Chd8
|
APN |
14 |
52,436,551 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02090:Chd8
|
APN |
14 |
52,464,691 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02344:Chd8
|
APN |
14 |
52,439,107 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02573:Chd8
|
APN |
14 |
52,457,191 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
IGL02601:Chd8
|
APN |
14 |
52,451,757 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
IGL02617:Chd8
|
APN |
14 |
52,472,648 (GRCm39) |
missense |
probably benign |
0.34 |
|
IGL02873:Chd8
|
APN |
14 |
52,459,970 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL02974:Chd8
|
APN |
14 |
52,439,158 (GRCm39) |
splice site |
probably null |
|
|
IGL03058:Chd8
|
APN |
14 |
52,455,730 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03076:Chd8
|
APN |
14 |
52,463,619 (GRCm39) |
splice site |
probably benign |
|
|
IGL03239:Chd8
|
APN |
14 |
52,465,005 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
PIT4431001:Chd8
|
UTSW |
14 |
52,455,706 (GRCm39) |
missense |
probably damaging |
0.98 |
|
PIT4468001:Chd8
|
UTSW |
14 |
52,455,338 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
PIT4468001:Chd8
|
UTSW |
14 |
52,445,453 (GRCm39) |
missense |
probably benign |
|
|
R0006:Chd8
|
UTSW |
14 |
52,472,750 (GRCm39) |
missense |
possibly damaging |
0.51 |
|
R0006:Chd8
|
UTSW |
14 |
52,472,750 (GRCm39) |
missense |
possibly damaging |
0.51 |
|
R0022:Chd8
|
UTSW |
14 |
52,470,312 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0115:Chd8
|
UTSW |
14 |
52,474,663 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0131:Chd8
|
UTSW |
14 |
52,442,783 (GRCm39) |
missense |
probably benign |
0.15 |
|
R0131:Chd8
|
UTSW |
14 |
52,442,783 (GRCm39) |
missense |
probably benign |
0.15 |
|
R0132:Chd8
|
UTSW |
14 |
52,442,783 (GRCm39) |
missense |
probably benign |
0.15 |
|
R0419:Chd8
|
UTSW |
14 |
52,441,517 (GRCm39) |
missense |
probably benign |
0.24 |
|
R0440:Chd8
|
UTSW |
14 |
52,442,283 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R0452:Chd8
|
UTSW |
14 |
52,452,044 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0481:Chd8
|
UTSW |
14 |
52,474,663 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0624:Chd8
|
UTSW |
14 |
52,457,214 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R0650:Chd8
|
UTSW |
14 |
52,439,761 (GRCm39) |
missense |
probably benign |
0.09 |
|
R0691:Chd8
|
UTSW |
14 |
52,450,890 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0790:Chd8
|
UTSW |
14 |
52,441,482 (GRCm39) |
missense |
probably benign |
0.07 |
|
R0835:Chd8
|
UTSW |
14 |
52,441,482 (GRCm39) |
missense |
probably benign |
0.07 |
|
R1180:Chd8
|
UTSW |
14 |
52,458,565 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1411:Chd8
|
UTSW |
14 |
52,462,103 (GRCm39) |
missense |
probably benign |
|
|
R1725:Chd8
|
UTSW |
14 |
52,470,030 (GRCm39) |
missense |
probably benign |
0.08 |
|
R1838:Chd8
|
UTSW |
14 |
52,442,340 (GRCm39) |
missense |
probably benign |
0.11 |
|
R1968:Chd8
|
UTSW |
14 |
52,458,450 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R2020:Chd8
|
UTSW |
14 |
52,452,698 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2024:Chd8
|
UTSW |
14 |
52,468,950 (GRCm39) |
missense |
probably benign |
0.23 |
|
R2139:Chd8
|
UTSW |
14 |
52,474,428 (GRCm39) |
missense |
probably benign |
0.32 |
|
R2163:Chd8
|
UTSW |
14 |
52,436,275 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R2342:Chd8
|
UTSW |
14 |
52,442,674 (GRCm39) |
missense |
probably benign |
0.25 |
|
R2844:Chd8
|
UTSW |
14 |
52,441,952 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R3500:Chd8
|
UTSW |
14 |
52,443,110 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3861:Chd8
|
UTSW |
14 |
52,474,578 (GRCm39) |
missense |
probably benign |
0.13 |
|
R4154:Chd8
|
UTSW |
14 |
52,444,668 (GRCm39) |
unclassified |
probably benign |
|
|
R4445:Chd8
|
UTSW |
14 |
52,441,984 (GRCm39) |
splice site |
probably null |
|
|
R4628:Chd8
|
UTSW |
14 |
52,444,372 (GRCm39) |
missense |
probably benign |
0.03 |
|
R4779:Chd8
|
UTSW |
14 |
52,468,963 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4783:Chd8
|
UTSW |
14 |
52,442,825 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4784:Chd8
|
UTSW |
14 |
52,442,825 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5001:Chd8
|
UTSW |
14 |
52,441,372 (GRCm39) |
missense |
probably benign |
0.09 |
|
R5280:Chd8
|
UTSW |
14 |
52,442,582 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R5331:Chd8
|
UTSW |
14 |
52,439,571 (GRCm39) |
intron |
probably benign |
|
|
R5348:Chd8
|
UTSW |
14 |
52,470,155 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5375:Chd8
|
UTSW |
14 |
52,441,611 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5470:Chd8
|
UTSW |
14 |
52,450,066 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5479:Chd8
|
UTSW |
14 |
52,452,652 (GRCm39) |
missense |
probably benign |
0.15 |
|
R5488:Chd8
|
UTSW |
14 |
52,450,505 (GRCm39) |
intron |
probably benign |
|
|
R5489:Chd8
|
UTSW |
14 |
52,450,505 (GRCm39) |
intron |
probably benign |
|
|
R5499:Chd8
|
UTSW |
14 |
52,441,888 (GRCm39) |
critical splice donor site |
probably null |
|
|
R5988:Chd8
|
UTSW |
14 |
52,455,395 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6046:Chd8
|
UTSW |
14 |
52,458,528 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R6125:Chd8
|
UTSW |
14 |
52,444,491 (GRCm39) |
missense |
probably benign |
0.16 |
|
R6212:Chd8
|
UTSW |
14 |
52,439,155 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6337:Chd8
|
UTSW |
14 |
52,441,566 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6394:Chd8
|
UTSW |
14 |
52,440,042 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R6576:Chd8
|
UTSW |
14 |
52,453,533 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6590:Chd8
|
UTSW |
14 |
52,464,694 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R6690:Chd8
|
UTSW |
14 |
52,464,694 (GRCm39) |
missense |
possibly damaging |
0.60 |
|
R6786:Chd8
|
UTSW |
14 |
52,464,125 (GRCm39) |
missense |
probably benign |
0.33 |
|
R6913:Chd8
|
UTSW |
14 |
52,451,951 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7090:Chd8
|
UTSW |
14 |
52,452,677 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7107:Chd8
|
UTSW |
14 |
52,450,129 (GRCm39) |
missense |
probably benign |
0.07 |
|
R7138:Chd8
|
UTSW |
14 |
52,451,955 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R7383:Chd8
|
UTSW |
14 |
52,452,776 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7392:Chd8
|
UTSW |
14 |
52,470,312 (GRCm39) |
missense |
probably benign |
|
|
R7471:Chd8
|
UTSW |
14 |
52,441,569 (GRCm39) |
missense |
probably benign |
|
|
R7625:Chd8
|
UTSW |
14 |
52,474,534 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7790:Chd8
|
UTSW |
14 |
52,463,539 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7862:Chd8
|
UTSW |
14 |
52,451,734 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7937:Chd8
|
UTSW |
14 |
52,464,963 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8092:Chd8
|
UTSW |
14 |
52,455,184 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8237:Chd8
|
UTSW |
14 |
52,450,809 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8321:Chd8
|
UTSW |
14 |
52,470,024 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8371:Chd8
|
UTSW |
14 |
52,470,275 (GRCm39) |
missense |
probably benign |
|
|
R8425:Chd8
|
UTSW |
14 |
52,448,012 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8674:Chd8
|
UTSW |
14 |
52,450,463 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8794:Chd8
|
UTSW |
14 |
52,441,904 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8828:Chd8
|
UTSW |
14 |
52,448,037 (GRCm39) |
frame shift |
probably null |
|
|
R8909:Chd8
|
UTSW |
14 |
52,450,389 (GRCm39) |
missense |
possibly damaging |
0.82 |
|
R9194:Chd8
|
UTSW |
14 |
52,439,650 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9278:Chd8
|
UTSW |
14 |
52,472,627 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9489:Chd8
|
UTSW |
14 |
52,457,055 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9501:Chd8
|
UTSW |
14 |
52,452,045 (GRCm39) |
missense |
probably benign |
0.04 |
|
R9546:Chd8
|
UTSW |
14 |
52,453,408 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9605:Chd8
|
UTSW |
14 |
52,457,055 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9694:Chd8
|
UTSW |
14 |
52,441,341 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTATTGTGAAGTAGGCCCAATG -3'
(R):5'- CCCAATCTGGAGAGTCTGAC -3'
Sequencing Primer
(F):5'- TAGGCCCAATGAATAATAGAGGTAC -3'
(R):5'- CCAATCTGGAGAGTCTGACTTTAAAG -3'
|
| Posted On |
2014-06-23 |
Incidental Mutation