Mutagenetix > Incidental Mutation

Incidental Mutation 'R1829:Nynrin'

207155

Institutional Source

Beutler Lab

Gene Symbol

Nynrin

Ensembl Gene

ENSMUSG00000075592

Gene Name

NYN domain and retroviral integrase containing

Synonyms

MMRRC Submission

039856-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1829 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

55854010-55874736 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 55872947 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 1837 (D1837G)

Ref Sequence

ENSEMBL: ENSMUSP00000129557 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000100529] [ENSMUST00000168479]

AlphaFold

Q5DTZ0

Predicted Effect

possibly damaging
Transcript: ENSMUST00000100529
AA Change: D1837G

PolyPhen 2 Score 0.505 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000098098
Gene: ENSMUSG00000075592
AA Change: D1837G

Domain	Start	End	E-Value	Type
low complexity region	581	606	N/A	INTRINSIC
Pfam:RNase_Zc3h12a	739	890	1.6e-54	PFAM
low complexity region	938	952	N/A	INTRINSIC
low complexity region	1212	1228	N/A	INTRINSIC
low complexity region	1390	1397	N/A	INTRINSIC
PDB:3S3O\|B	1478	1706	6e-8	PDB
SCOP:d1cxqa_	1552	1646	2e-12	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000168479
AA Change: D1837G

PolyPhen 2 Score 0.505 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000129557
Gene: ENSMUSG00000075592
AA Change: D1837G

Domain	Start	End	E-Value	Type
low complexity region	581	606	N/A	INTRINSIC
Pfam:RNase_Zc3h12a	739	890	5.5e-54	PFAM
low complexity region	938	952	N/A	INTRINSIC
low complexity region	1212	1228	N/A	INTRINSIC
low complexity region	1390	1397	N/A	INTRINSIC
PDB:3S3O\|B	1478	1706	6e-8	PDB
SCOP:d1cxqa_	1552	1646	2e-12	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181218

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.1%
20x: 91.7%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 114 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
7420426K07Rik	T	A	9: 98,903,393 (GRCm38)	I37N	possibly damaging	Het
Aars	A	T	8: 111,042,706 (GRCm38)	D287V	probably damaging	Het
Abca12	A	G	1: 71,295,029 (GRCm38)	C1105R	probably benign	Het
Abca8b	T	A	11: 109,942,341 (GRCm38)	N1178Y	probably damaging	Het
Abhd12	A	G	2: 150,843,398 (GRCm38)	L189P	probably damaging	Het
Acap2	G	T	16: 31,110,934 (GRCm38)	N435K	probably damaging	Het
Adam6b	G	T	12: 113,489,925 (GRCm38)	G121C	probably damaging	Het
Adgrb1	C	A	15: 74,580,586 (GRCm38)	C200*	probably null	Het
Agbl5	T	C	5: 30,903,064 (GRCm38)	S730P	possibly damaging	Het
Ahsg	G	A	16: 22,892,328 (GRCm38)		probably benign	Het
Aldh9a1	A	T	1: 167,361,854 (GRCm38)	K390N	probably benign	Het
Alpk2	T	A	18: 65,294,094 (GRCm38)	H1857L	possibly damaging	Het
Apip	T	A	2: 103,088,662 (GRCm38)	N102K	probably benign	Het
Asxl2	T	C	12: 3,457,125 (GRCm38)	S106P	probably damaging	Het
Atp2b2	G	T	6: 113,773,368 (GRCm38)	R677S	probably damaging	Het
Barhl1	A	C	2: 28,909,845 (GRCm38)	M256R	probably damaging	Het
BC025446	T	G	15: 75,216,756 (GRCm38)		probably null	Het
BC052040	G	T	2: 115,642,692 (GRCm38)	R101L	possibly damaging	Het
Cacnb2	A	T	2: 14,985,964 (GRCm38)	Q619L	possibly damaging	Het
Ccdc137	C	T	11: 120,458,212 (GRCm38)	P23L	probably benign	Het
Cdh11	A	T	8: 102,634,641 (GRCm38)	N688K	possibly damaging	Het
Cdh18	C	T	15: 23,173,852 (GRCm38)	P51S	probably damaging	Het
Cfhr1	A	T	1: 139,553,600 (GRCm38)	Y181N	probably damaging	Het
Chmp3	A	G	6: 71,560,939 (GRCm38)	D50G	probably benign	Het
Crem	T	C	18: 3,295,037 (GRCm38)		probably null	Het
Cyb561a3	G	A	19: 10,582,393 (GRCm38)	W27*	probably null	Het
Cyp2d12	C	A	15: 82,558,056 (GRCm38)	N297K	possibly damaging	Het
Dclk2	C	T	3: 86,805,639 (GRCm38)	R503Q	possibly damaging	Het
Dnah12	T	C	14: 26,773,023 (GRCm38)	L1346P	probably damaging	Het
Dnah12	T	A	14: 26,800,075 (GRCm38)	N1948K	probably damaging	Het
Dsp	T	G	13: 38,193,195 (GRCm38)	L1652R	probably damaging	Het
Dstyk	G	A	1: 132,449,595 (GRCm38)	S66N	probably benign	Het
Ehhadh	T	C	16: 21,762,178 (GRCm38)	E688G	probably damaging	Het
Emsy	T	A	7: 98,602,729 (GRCm38)	H688L	possibly damaging	Het
Emsy	G	T	7: 98,602,730 (GRCm38)	H688N	possibly damaging	Het
Endod1	A	G	9: 14,356,926 (GRCm38)	L421P	probably damaging	Het
Fam222b	C	T	11: 78,155,035 (GRCm38)	P346L	probably damaging	Het
Fam3c	G	A	6: 22,309,437 (GRCm38)	R182W	probably damaging	Het
Gck	T	C	11: 5,910,984 (GRCm38)	D29G	probably damaging	Het
Gm10320	C	A	13: 98,489,699 (GRCm38)	R59L	probably damaging	Het
Gm11127	G	T	17: 36,058,004 (GRCm38)	F61L	probably damaging	Het
Gm21798	C	T	15: 64,817,826 (GRCm38)		probably benign	Het
Gm9376	A	G	14: 118,267,545 (GRCm38)	T130A	possibly damaging	Het
Gpr153	T	A	4: 152,282,392 (GRCm38)	I334N	possibly damaging	Het
Greb1l	T	C	18: 10,509,314 (GRCm38)	L542P	probably damaging	Het
Hacl1	T	C	14: 31,640,534 (GRCm38)	E52G	probably benign	Het
Ice2	A	G	9: 69,407,353 (GRCm38)	Y128C	probably damaging	Het
Ikzf2	T	A	1: 69,542,287 (GRCm38)	I121L	probably benign	Het
Ipcef1	C	T	10: 6,919,900 (GRCm38)	A167T	probably benign	Het
Jakmip2	T	A	18: 43,582,080 (GRCm38)	D127V	possibly damaging	Het
Jph4	T	C	14: 55,114,911 (GRCm38)	T122A	probably damaging	Het
Kcns2	A	G	15: 34,838,803 (GRCm38)	E104G	probably damaging	Het
Lars2	A	C	9: 123,431,917 (GRCm38)	R384S	probably benign	Het
Lsmem1	T	A	12: 40,185,408 (GRCm38)	H3L	possibly damaging	Het
Lsmem1	G	T	12: 40,185,409 (GRCm38)	H3N	possibly damaging	Het
Mfhas1	A	C	8: 35,590,068 (GRCm38)	S566R	probably benign	Het
Mfhas1	C	G	8: 35,590,248 (GRCm38)	R626G	probably benign	Het
Mgam	A	G	6: 40,666,892 (GRCm38)	T585A	probably damaging	Het
Mmp25	T	C	17: 23,640,023 (GRCm38)	K185E	probably benign	Het
Mtch1	T	C	17: 29,338,776 (GRCm38)	I243V	probably damaging	Het
Mtcp1	A	T	X: 75,411,665 (GRCm38)	Y25*	probably null	Het
Mybl2	A	G	2: 163,059,583 (GRCm38)	T35A	probably benign	Het
Myh11	T	C	16: 14,223,880 (GRCm38)	E736G	probably damaging	Het
Myh2	T	C	11: 67,176,559 (GRCm38)	I224T	probably damaging	Het
Mymx	T	C	17: 45,601,833 (GRCm38)		probably benign	Het
Nek10	A	G	14: 14,863,454 (GRCm38)		probably null	Het
Nsd1	A	T	13: 55,246,369 (GRCm38)	K697N	probably damaging	Het
Olfr115	G	A	17: 37,610,277 (GRCm38)	T158I	probably benign	Het
Olfr424	T	A	1: 174,137,194 (GRCm38)	I150N	probably benign	Het
Olfr510	T	A	7: 108,667,644 (GRCm38)	I76N	probably benign	Het
Olfr593	A	T	7: 103,211,886 (GRCm38)	T9S	probably benign	Het
Olfr701	A	G	7: 106,819,007 (GRCm38)	H308R	probably benign	Het
Phf19	T	C	2: 34,911,769 (GRCm38)	T10A	probably benign	Het
Pkd1	A	T	17: 24,565,584 (GRCm38)	H368L	probably benign	Het
Plscr2	A	G	9: 92,290,755 (GRCm38)	R156G	probably damaging	Het
Ppp1r42	G	A	1: 10,000,086 (GRCm38)	R61C	probably benign	Het
Pptc7	T	G	5: 122,313,616 (GRCm38)	V45G	probably damaging	Het
Prlhr	G	A	19: 60,467,429 (GRCm38)	T233I	probably damaging	Het
Reps1	C	T	10: 18,107,714 (GRCm38)	T435I	probably damaging	Het
Ret	T	A	6: 118,153,951 (GRCm38)	T1084S	probably damaging	Het
Rgl2	T	A	17: 33,933,621 (GRCm38)	M402K	probably benign	Het
Rp2	A	G	X: 20,376,915 (GRCm38)	K43R	probably benign	Het
Rundc3b	A	T	5: 8,579,117 (GRCm38)	W95R	probably damaging	Het
Samd9l	T	C	6: 3,375,107 (GRCm38)	D718G	possibly damaging	Het
Scnn1b	G	A	7: 121,902,845 (GRCm38)	R242H	probably benign	Het
Smad4	G	T	18: 73,641,894 (GRCm38)	Q445K	probably benign	Het
Smchd1	G	T	17: 71,370,337 (GRCm38)	P1486T	probably damaging	Het
Snx25	G	T	8: 46,035,632 (GRCm38)	N895K	possibly damaging	Het
Sox2	A	G	3: 34,650,741 (GRCm38)	D109G	probably damaging	Het
Stfa2	A	T	16: 36,405,202 (GRCm38)	N38K	probably damaging	Het
Stfa2	C	A	16: 36,405,211 (GRCm38)	E35D	possibly damaging	Het
Stfa3	A	G	16: 36,450,661 (GRCm38)	L87P	probably damaging	Het
Strbp	T	C	2: 37,640,909 (GRCm38)	D111G	possibly damaging	Het
Supt20	C	A	3: 54,727,658 (GRCm38)		probably benign	Het
Svep1	A	G	4: 58,096,310 (GRCm38)	Y1437H	possibly damaging	Het
Tbx4	T	A	11: 85,911,920 (GRCm38)		probably null	Het
Tmem117	A	T	15: 95,094,551 (GRCm38)	N364I	probably damaging	Het
Tmem8	T	C	17: 26,122,220 (GRCm38)	Y766H	probably damaging	Het
Trat1	T	C	16: 48,761,379 (GRCm38)	E45G	probably damaging	Het
Trpc2	G	A	7: 102,084,119 (GRCm38)	D92N	probably damaging	Het
Trpm1	G	A	7: 64,226,782 (GRCm38)	D528N	probably damaging	Het
Ttll9	A	G	2: 153,000,236 (GRCm38)	S337G	possibly damaging	Het
Utrn	A	T	10: 12,475,274 (GRCm38)	I355N	probably damaging	Het
Vangl1	A	G	3: 102,163,466 (GRCm38)	S385P	probably benign	Het
Vmn1r209	A	G	13: 22,806,239 (GRCm38)	S94P	possibly damaging	Het
Vmn2r28	T	A	7: 5,493,811 (GRCm38)	Q14L	probably benign	Het
Vps45	A	G	3: 96,047,245 (GRCm38)		probably null	Het
Wdr48	T	C	9: 119,904,330 (GRCm38)	V81A	probably benign	Het
Xpnpep2	A	G	X: 48,125,353 (GRCm38)	N476S	probably benign	Het
Zbtb41	A	T	1: 139,446,922 (GRCm38)	K707*	probably null	Het
Zfp442	A	C	2: 150,409,063 (GRCm38)	C306W	probably damaging	Het
Zfp811	T	C	17: 32,798,142 (GRCm38)	N307S	possibly damaging	Het
Zfp976	A	G	7: 42,616,311 (GRCm38)	W17R	probably damaging	Het
Zyg11b	T	C	4: 108,266,093 (GRCm38)	T226A	possibly damaging	Het

Other mutations in Nynrin

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01020:Nynrin	APN	14	55,868,448 (GRCm38)	missense	probably benign	0.38
IGL01131:Nynrin	APN	14	55,872,685 (GRCm38)	missense	probably damaging	1.00
IGL01357:Nynrin	APN	14	55,870,417 (GRCm38)	missense	probably benign
IGL01537:Nynrin	APN	14	55,872,045 (GRCm38)	missense	possibly damaging	0.87
IGL01583:Nynrin	APN	14	55,870,511 (GRCm38)	missense	probably damaging	1.00
IGL01726:Nynrin	APN	14	55,864,154 (GRCm38)	missense	probably benign
IGL02161:Nynrin	APN	14	55,863,984 (GRCm38)	missense	probably damaging	1.00
IGL02167:Nynrin	APN	14	55,863,335 (GRCm38)	missense	probably damaging	1.00
IGL02247:Nynrin	APN	14	55,871,710 (GRCm38)	nonsense	probably null
IGL02302:Nynrin	APN	14	55,868,505 (GRCm38)	missense	probably benign	0.43
IGL02524:Nynrin	APN	14	55,871,474 (GRCm38)	missense	possibly damaging	0.73
IGL02600:Nynrin	APN	14	55,863,992 (GRCm38)	missense	probably benign	0.38
IGL02639:Nynrin	APN	14	55,870,655 (GRCm38)	missense	probably damaging	1.00
IGL02654:Nynrin	APN	14	55,863,259 (GRCm38)	missense	possibly damaging	0.95
IGL02659:Nynrin	APN	14	55,866,097 (GRCm38)	unclassified	probably benign
IGL02736:Nynrin	APN	14	55,870,909 (GRCm38)	missense	probably damaging	1.00
IGL02949:Nynrin	APN	14	55,872,380 (GRCm38)	missense	probably damaging	0.99
PIT4458001:Nynrin	UTSW	14	55,863,968 (GRCm38)	missense	probably benign	0.39
R0017:Nynrin	UTSW	14	55,872,395 (GRCm38)	missense	probably damaging	1.00
R0078:Nynrin	UTSW	14	55,863,332 (GRCm38)	missense	probably damaging	1.00
R0211:Nynrin	UTSW	14	55,871,798 (GRCm38)	missense	probably benign	0.08
R0211:Nynrin	UTSW	14	55,871,798 (GRCm38)	missense	probably benign	0.08
R0413:Nynrin	UTSW	14	55,872,191 (GRCm38)	missense	possibly damaging	0.90
R0609:Nynrin	UTSW	14	55,872,761 (GRCm38)	missense	probably damaging	1.00
R0626:Nynrin	UTSW	14	55,868,035 (GRCm38)	missense	probably damaging	1.00
R1205:Nynrin	UTSW	14	55,854,189 (GRCm38)	intron	probably benign
R1222:Nynrin	UTSW	14	55,863,541 (GRCm38)	missense	probably benign	0.02
R1385:Nynrin	UTSW	14	55,864,899 (GRCm38)	missense	probably benign	0.00
R1820:Nynrin	UTSW	14	55,870,378 (GRCm38)	missense	possibly damaging	0.95
R1874:Nynrin	UTSW	14	55,863,493 (GRCm38)	missense	probably benign	0.04
R1927:Nynrin	UTSW	14	55,863,592 (GRCm38)	missense	probably benign	0.00
R2233:Nynrin	UTSW	14	55,872,067 (GRCm38)	missense	possibly damaging	0.83
R3018:Nynrin	UTSW	14	55,863,410 (GRCm38)	missense	probably benign	0.00
R3154:Nynrin	UTSW	14	55,863,587 (GRCm38)	missense	possibly damaging	0.46
R3853:Nynrin	UTSW	14	55,864,105 (GRCm38)	missense	probably benign	0.24
R4648:Nynrin	UTSW	14	55,872,894 (GRCm38)	nonsense	probably null
R4722:Nynrin	UTSW	14	55,854,395 (GRCm38)	missense	probably damaging	0.97
R4735:Nynrin	UTSW	14	55,870,168 (GRCm38)	missense	probably benign	0.03
R4736:Nynrin	UTSW	14	55,863,997 (GRCm38)	missense	probably damaging	1.00
R4780:Nynrin	UTSW	14	55,863,263 (GRCm38)	missense	probably damaging	1.00
R4804:Nynrin	UTSW	14	55,864,869 (GRCm38)	missense	probably benign
R4816:Nynrin	UTSW	14	55,872,001 (GRCm38)	missense	probably damaging	1.00
R5307:Nynrin	UTSW	14	55,863,806 (GRCm38)	missense	probably damaging	1.00
R5372:Nynrin	UTSW	14	55,868,491 (GRCm38)	missense	probably benign	0.01
R5432:Nynrin	UTSW	14	55,864,466 (GRCm38)	missense	possibly damaging	0.80
R5800:Nynrin	UTSW	14	55,870,631 (GRCm38)	missense	probably damaging	1.00
R5825:Nynrin	UTSW	14	55,864,226 (GRCm38)	missense	probably benign	0.00
R6149:Nynrin	UTSW	14	55,854,323 (GRCm38)	missense	possibly damaging	0.83
R6244:Nynrin	UTSW	14	55,868,028 (GRCm38)	missense	probably damaging	1.00
R6350:Nynrin	UTSW	14	55,868,076 (GRCm38)	missense	probably benign	0.19
R6379:Nynrin	UTSW	14	55,870,391 (GRCm38)	missense	probably damaging	1.00
R6437:Nynrin	UTSW	14	55,871,770 (GRCm38)	missense	probably benign	0.00
R6501:Nynrin	UTSW	14	55,863,532 (GRCm38)	missense	probably benign
R6702:Nynrin	UTSW	14	55,864,478 (GRCm38)	missense	possibly damaging	0.80
R6703:Nynrin	UTSW	14	55,864,478 (GRCm38)	missense	possibly damaging	0.80
R6907:Nynrin	UTSW	14	55,863,878 (GRCm38)	missense	probably benign	0.20
R6908:Nynrin	UTSW	14	55,863,878 (GRCm38)	missense	probably benign	0.20
R6928:Nynrin	UTSW	14	55,863,878 (GRCm38)	missense	probably benign	0.20
R6934:Nynrin	UTSW	14	55,863,878 (GRCm38)	missense	probably benign	0.20
R6935:Nynrin	UTSW	14	55,863,878 (GRCm38)	missense	probably benign	0.20
R7197:Nynrin	UTSW	14	55,871,923 (GRCm38)	missense	probably benign	0.00
R7204:Nynrin	UTSW	14	55,872,733 (GRCm38)	missense	probably damaging	1.00
R7272:Nynrin	UTSW	14	55,870,415 (GRCm38)	missense	probably damaging	1.00
R7335:Nynrin	UTSW	14	55,863,914 (GRCm38)	missense	probably benign
R7361:Nynrin	UTSW	14	55,870,400 (GRCm38)	missense	possibly damaging	0.71
R7368:Nynrin	UTSW	14	55,870,511 (GRCm38)	missense	probably damaging	1.00
R7443:Nynrin	UTSW	14	55,871,416 (GRCm38)	missense	probably benign	0.18
R7584:Nynrin	UTSW	14	55,871,584 (GRCm38)	missense	probably damaging	1.00
R7677:Nynrin	UTSW	14	55,870,236 (GRCm38)	missense	probably benign
R7723:Nynrin	UTSW	14	55,872,045 (GRCm38)	missense	possibly damaging	0.87
R7776:Nynrin	UTSW	14	55,865,963 (GRCm38)	missense	probably damaging	1.00
R7787:Nynrin	UTSW	14	55,870,523 (GRCm38)	missense	probably benign
R7842:Nynrin	UTSW	14	55,865,096 (GRCm38)	missense	probably damaging	1.00
R7852:Nynrin	UTSW	14	55,871,429 (GRCm38)	missense	probably damaging	0.96
R8040:Nynrin	UTSW	14	55,871,525 (GRCm38)	missense	probably benign	0.01
R8159:Nynrin	UTSW	14	55,865,060 (GRCm38)	missense	probably benign
R8159:Nynrin	UTSW	14	55,863,130 (GRCm38)	missense	probably damaging	0.99
R8258:Nynrin	UTSW	14	55,863,358 (GRCm38)	missense	possibly damaging	0.95
R8259:Nynrin	UTSW	14	55,863,358 (GRCm38)	missense	possibly damaging	0.95
R8343:Nynrin	UTSW	14	55,863,791 (GRCm38)	missense	probably benign
R8504:Nynrin	UTSW	14	55,870,246 (GRCm38)	missense	probably benign	0.01
R8671:Nynrin	UTSW	14	55,870,442 (GRCm38)	missense	possibly damaging	0.52
R8691:Nynrin	UTSW	14	55,872,649 (GRCm38)	missense	probably damaging	1.00
R8777:Nynrin	UTSW	14	55,871,663 (GRCm38)	missense	probably benign
R8777-TAIL:Nynrin	UTSW	14	55,871,663 (GRCm38)	missense	probably benign
R9041:Nynrin	UTSW	14	55,871,296 (GRCm38)	missense	possibly damaging	0.83
R9346:Nynrin	UTSW	14	55,863,038 (GRCm38)	missense	probably benign	0.01
R9366:Nynrin	UTSW	14	55,863,130 (GRCm38)	missense	probably damaging	0.99
R9690:Nynrin	UTSW	14	55,870,747 (GRCm38)	missense	probably benign	0.00
RF007:Nynrin	UTSW	14	55,866,201 (GRCm38)	splice site	probably null

Predicted Primers

PCR Primer
(F):5'- TTGTCTCTCCCCAGGAATGG -3'
(R):5'- TGGCACATTCTCCAAGTACCC -3'

Sequencing Primer
(F):5'- CCCAGGAATGGCAGCAGTG -3'
(R):5'- GATGTGTTATAGGGACATCCACC -3'

Posted On

2014-06-23