Incidental Mutation 'R1844:Slit1'
ID |
207604 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Slit1
|
Ensembl Gene |
ENSMUSG00000025020 |
Gene Name |
slit guidance ligand 1 |
Synonyms |
Slil1 |
MMRRC Submission |
039869-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R1844 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
19 |
Chromosomal Location |
41588696-41732104 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 41614012 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Leucine to Proline
at position 820
(L820P)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000129034
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000025993]
[ENSMUST00000166496]
[ENSMUST00000169141]
|
AlphaFold |
Q80TR4 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000025993
AA Change: L820P
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000025993 Gene: ENSMUSG00000025020 AA Change: L820P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
FOLN
|
1418 |
1440 |
2.25e1 |
SMART |
EGF
|
1418 |
1451 |
1.28e-3 |
SMART |
CT
|
1462 |
1531 |
3.15e-4 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000166496
AA Change: L820P
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000128381 Gene: ENSMUSG00000025020 AA Change: L820P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
low complexity region
|
1437 |
1458 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000169141
AA Change: L820P
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000129034 Gene: ENSMUSG00000025020 AA Change: L820P
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
32 |
N/A |
INTRINSIC |
LRRNT
|
33 |
65 |
5.68e-9 |
SMART |
LRR
|
59 |
83 |
4.58e1 |
SMART |
LRR
|
84 |
107 |
4.7e0 |
SMART |
LRR_TYP
|
108 |
131 |
1.95e-3 |
SMART |
LRR
|
133 |
155 |
6.05e0 |
SMART |
LRR
|
157 |
179 |
3.98e1 |
SMART |
LRR_TYP
|
180 |
203 |
3.44e-4 |
SMART |
LRRCT
|
215 |
264 |
3.51e-6 |
SMART |
LRRNT
|
281 |
313 |
3e-8 |
SMART |
LRR
|
307 |
331 |
6.41e1 |
SMART |
LRR_TYP
|
332 |
355 |
8.22e-2 |
SMART |
LRR_TYP
|
356 |
379 |
9.08e-4 |
SMART |
LRR
|
380 |
403 |
2.82e0 |
SMART |
LRR_TYP
|
404 |
427 |
5.42e-2 |
SMART |
LRRCT
|
439 |
488 |
5.78e-7 |
SMART |
LRRNT
|
512 |
544 |
1.04e-7 |
SMART |
LRR_TYP
|
564 |
587 |
3.39e-3 |
SMART |
LRR
|
589 |
611 |
2.08e1 |
SMART |
LRR_TYP
|
612 |
635 |
1.56e-2 |
SMART |
LRR_TYP
|
636 |
659 |
4.11e-2 |
SMART |
LRRCT
|
671 |
720 |
2.89e-7 |
SMART |
LRRNT
|
733 |
765 |
4.87e-8 |
SMART |
LRR
|
783 |
806 |
1.22e1 |
SMART |
LRR_TYP
|
807 |
830 |
9.73e-4 |
SMART |
LRR_TYP
|
831 |
854 |
9.58e-3 |
SMART |
LRRCT
|
866 |
915 |
5.6e-14 |
SMART |
EGF
|
928 |
962 |
5.08e-7 |
SMART |
EGF
|
967 |
1003 |
1.74e-5 |
SMART |
EGF_CA
|
1005 |
1041 |
1.05e-8 |
SMART |
EGF
|
1046 |
1081 |
1.21e-4 |
SMART |
EGF_CA
|
1083 |
1119 |
3.64e-8 |
SMART |
FOLN
|
1086 |
1108 |
8.44e0 |
SMART |
FOLN
|
1127 |
1149 |
1.4e0 |
SMART |
EGF
|
1127 |
1160 |
1.78e-2 |
SMART |
LamG
|
1183 |
1319 |
4.43e-38 |
SMART |
EGF
|
1338 |
1371 |
6.76e-3 |
SMART |
EGF
|
1377 |
1410 |
3.38e-3 |
SMART |
FOLN
|
1418 |
1440 |
2.25e1 |
SMART |
EGF
|
1418 |
1451 |
1.28e-3 |
SMART |
|
Coding Region Coverage |
- 1x: 97.5%
- 3x: 96.9%
- 10x: 95.2%
- 20x: 92.1%
|
Validation Efficiency |
|
MGI Phenotype |
PHENOTYPE: Mice homozygous for a reporter allele exhibit normal interneuron numbers and morphology. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 93 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aco1 |
A |
G |
4: 40,197,566 (GRCm39) |
K857E |
probably benign |
Het |
Adam20 |
A |
G |
8: 41,249,080 (GRCm39) |
N397D |
probably benign |
Het |
Adgrf3 |
T |
G |
5: 30,404,211 (GRCm39) |
D347A |
probably damaging |
Het |
Ang6 |
C |
T |
14: 44,239,330 (GRCm39) |
E133K |
possibly damaging |
Het |
Arhgap23 |
T |
A |
11: 97,354,234 (GRCm39) |
W205R |
probably damaging |
Het |
Arhgef40 |
C |
A |
14: 52,235,080 (GRCm39) |
R1086S |
probably damaging |
Het |
Atr |
G |
T |
9: 95,787,870 (GRCm39) |
A1488S |
probably benign |
Het |
Cabin1 |
A |
T |
10: 75,579,184 (GRCm39) |
|
probably null |
Het |
Cby2 |
C |
T |
14: 75,820,850 (GRCm39) |
V292I |
probably benign |
Het |
Cdh22 |
A |
C |
2: 164,985,614 (GRCm39) |
F324C |
probably damaging |
Het |
Cep350 |
T |
C |
1: 155,724,374 (GRCm39) |
I3075V |
probably damaging |
Het |
Chd9 |
A |
T |
8: 91,683,323 (GRCm39) |
K588* |
probably null |
Het |
Clns1a |
A |
T |
7: 97,346,066 (GRCm39) |
I44F |
probably damaging |
Het |
Colgalt1 |
T |
C |
8: 72,063,995 (GRCm39) |
I51T |
possibly damaging |
Het |
Cpt2 |
C |
T |
4: 107,761,452 (GRCm39) |
E217K |
possibly damaging |
Het |
Ctss |
A |
G |
3: 95,454,105 (GRCm39) |
|
probably null |
Het |
Cyp1a1 |
A |
G |
9: 57,609,980 (GRCm39) |
T465A |
probably benign |
Het |
Dbn1 |
A |
G |
13: 55,629,160 (GRCm39) |
|
probably null |
Het |
Dennd1b |
A |
G |
1: 139,018,143 (GRCm39) |
|
probably null |
Het |
Dnajc1 |
A |
C |
2: 18,298,838 (GRCm39) |
Y49* |
probably null |
Het |
Dock10 |
T |
A |
1: 80,520,918 (GRCm39) |
I1188L |
probably damaging |
Het |
Dsg1c |
T |
G |
18: 20,416,096 (GRCm39) |
|
probably null |
Het |
Efcab6 |
G |
A |
15: 83,851,822 (GRCm39) |
T352I |
possibly damaging |
Het |
Eps8l3 |
T |
C |
3: 107,786,902 (GRCm39) |
L26P |
possibly damaging |
Het |
Fbxw26 |
A |
G |
9: 109,553,946 (GRCm39) |
V231A |
probably benign |
Het |
Fetub |
G |
A |
16: 22,754,419 (GRCm39) |
E209K |
possibly damaging |
Het |
Galc |
A |
T |
12: 98,212,556 (GRCm39) |
|
probably null |
Het |
Gm6871 |
A |
T |
7: 41,222,892 (GRCm39) |
N65K |
probably benign |
Het |
Gstp3 |
A |
G |
19: 4,107,540 (GRCm39) |
I208T |
probably benign |
Het |
Gtpbp3 |
A |
G |
8: 71,945,272 (GRCm39) |
Y448C |
probably benign |
Het |
Hdac7 |
G |
T |
15: 97,705,857 (GRCm39) |
Q385K |
probably damaging |
Het |
Hemgn |
C |
T |
4: 46,396,655 (GRCm39) |
V194M |
possibly damaging |
Het |
Idh2 |
G |
C |
7: 79,748,625 (GRCm39) |
T113R |
probably benign |
Het |
Jarid2 |
A |
C |
13: 45,056,219 (GRCm39) |
K336T |
possibly damaging |
Het |
Kcnj4 |
C |
T |
15: 79,369,216 (GRCm39) |
V255M |
probably damaging |
Het |
Ldhb |
C |
A |
6: 142,439,934 (GRCm39) |
W202L |
probably damaging |
Het |
Lmbrd2 |
T |
A |
15: 9,177,838 (GRCm39) |
Y512* |
probably null |
Het |
Lrp1 |
A |
G |
10: 127,431,152 (GRCm39) |
|
probably null |
Het |
Map3k12 |
G |
A |
15: 102,411,970 (GRCm39) |
P365S |
probably damaging |
Het |
Map3k5 |
G |
A |
10: 19,979,909 (GRCm39) |
D806N |
probably benign |
Het |
Matn3 |
A |
G |
12: 9,017,662 (GRCm39) |
E438G |
possibly damaging |
Het |
Mcmbp |
G |
A |
7: 128,325,698 (GRCm39) |
L97F |
probably damaging |
Het |
Mmp3 |
A |
T |
9: 7,453,662 (GRCm39) |
I428L |
probably benign |
Het |
Mphosph8 |
T |
C |
14: 56,934,616 (GRCm39) |
V855A |
probably damaging |
Het |
Mycbp2 |
T |
A |
14: 103,393,150 (GRCm39) |
H3027L |
possibly damaging |
Het |
Nbea |
C |
T |
3: 55,989,857 (GRCm39) |
R333H |
probably damaging |
Het |
Notch1 |
G |
T |
2: 26,350,446 (GRCm39) |
H2231Q |
probably benign |
Het |
Npas2 |
A |
T |
1: 39,364,456 (GRCm39) |
H266L |
probably damaging |
Het |
Oas3 |
A |
G |
5: 120,898,045 (GRCm39) |
S833P |
probably damaging |
Het |
Or1j15 |
T |
C |
2: 36,458,789 (GRCm39) |
Y60H |
probably damaging |
Het |
Or5ak24 |
T |
C |
2: 85,260,265 (GRCm39) |
T303A |
probably benign |
Het |
Or5w17 |
A |
C |
2: 87,584,334 (GRCm39) |
M1R |
probably null |
Het |
Or6c65 |
G |
A |
10: 129,603,725 (GRCm39) |
R120H |
probably benign |
Het |
Pak4 |
C |
T |
7: 28,264,690 (GRCm39) |
V71I |
possibly damaging |
Het |
Pitpnm1 |
T |
C |
19: 4,162,395 (GRCm39) |
V1075A |
probably damaging |
Het |
Pkp3 |
G |
A |
7: 140,668,415 (GRCm39) |
V555M |
probably damaging |
Het |
Plekhm2 |
T |
C |
4: 141,359,685 (GRCm39) |
T381A |
probably benign |
Het |
Plppr3 |
A |
G |
10: 79,702,244 (GRCm39) |
|
probably null |
Het |
Ppp2r5e |
A |
T |
12: 75,516,540 (GRCm39) |
F216I |
possibly damaging |
Het |
Ppp3ca |
T |
A |
3: 136,627,672 (GRCm39) |
V412D |
probably benign |
Het |
Prss50 |
A |
G |
9: 110,687,081 (GRCm39) |
|
probably benign |
Het |
Psph |
A |
C |
5: 129,843,532 (GRCm39) |
I174R |
probably damaging |
Het |
Ptov1 |
A |
G |
7: 44,514,991 (GRCm39) |
Y207H |
possibly damaging |
Het |
Ptprs |
A |
G |
17: 56,741,510 (GRCm39) |
S585P |
probably damaging |
Het |
Rnf146 |
A |
T |
10: 29,223,720 (GRCm39) |
H55Q |
probably damaging |
Het |
Rnf213 |
T |
A |
11: 119,332,009 (GRCm39) |
M2407K |
probably damaging |
Het |
Rnls |
A |
C |
19: 33,179,931 (GRCm39) |
L55R |
possibly damaging |
Het |
Rptor |
T |
C |
11: 119,647,146 (GRCm39) |
C246R |
probably damaging |
Het |
Rrp12 |
C |
T |
19: 41,866,222 (GRCm39) |
|
probably null |
Het |
Samd3 |
A |
G |
10: 26,127,672 (GRCm39) |
D223G |
probably damaging |
Het |
Sdad1 |
G |
A |
5: 92,453,155 (GRCm39) |
Q68* |
probably null |
Het |
Selenov |
G |
A |
7: 27,989,847 (GRCm39) |
T219M |
probably damaging |
Het |
Shd |
A |
G |
17: 56,278,554 (GRCm39) |
D39G |
possibly damaging |
Het |
Slc26a10 |
A |
T |
10: 127,014,279 (GRCm39) |
V245E |
probably damaging |
Het |
Snap23 |
T |
C |
2: 120,421,163 (GRCm39) |
F96L |
probably benign |
Het |
Speer1k |
T |
C |
5: 10,998,994 (GRCm39) |
|
probably benign |
Het |
Spef1l |
A |
T |
7: 139,556,005 (GRCm39) |
I212N |
probably benign |
Het |
Stkld1 |
A |
G |
2: 26,840,115 (GRCm39) |
H395R |
probably damaging |
Het |
Syt13 |
G |
A |
2: 92,771,165 (GRCm39) |
G84D |
probably damaging |
Het |
Terb2 |
T |
A |
2: 122,016,990 (GRCm39) |
L37Q |
probably damaging |
Het |
Themis |
A |
G |
10: 28,657,753 (GRCm39) |
Y107C |
probably damaging |
Het |
Top2a |
T |
A |
11: 98,906,895 (GRCm39) |
T249S |
probably benign |
Het |
Tspo2 |
A |
T |
17: 48,756,148 (GRCm39) |
F71Y |
probably damaging |
Het |
Ttc21b |
T |
A |
2: 66,053,921 (GRCm39) |
K753* |
probably null |
Het |
Ttk |
A |
G |
9: 83,736,915 (GRCm39) |
Y458C |
possibly damaging |
Het |
Ttn |
T |
C |
2: 76,586,017 (GRCm39) |
R21905G |
probably damaging |
Het |
Ugt3a1 |
T |
A |
15: 9,351,254 (GRCm39) |
F88I |
probably benign |
Het |
Vmn1r119 |
A |
G |
7: 20,746,121 (GRCm39) |
L87P |
probably damaging |
Het |
Vmn1r36 |
A |
G |
6: 66,693,747 (GRCm39) |
F6L |
probably benign |
Het |
Vmn2r15 |
T |
A |
5: 109,434,860 (GRCm39) |
K615* |
probably null |
Het |
Wdr18 |
G |
A |
10: 79,802,561 (GRCm39) |
|
probably null |
Het |
Wdr6 |
A |
T |
9: 108,453,176 (GRCm39) |
W236R |
probably damaging |
Het |
Zbtb48 |
T |
C |
4: 152,110,955 (GRCm39) |
T187A |
probably benign |
Het |
|
Other mutations in Slit1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00162:Slit1
|
APN |
19 |
41,639,274 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL00515:Slit1
|
APN |
19 |
41,612,940 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL00909:Slit1
|
APN |
19 |
41,590,694 (GRCm39) |
missense |
possibly damaging |
0.89 |
IGL00953:Slit1
|
APN |
19 |
41,590,739 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01116:Slit1
|
APN |
19 |
41,594,824 (GRCm39) |
missense |
possibly damaging |
0.93 |
IGL01457:Slit1
|
APN |
19 |
41,599,483 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01688:Slit1
|
APN |
19 |
41,717,545 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01720:Slit1
|
APN |
19 |
41,622,653 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01925:Slit1
|
APN |
19 |
41,596,817 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02008:Slit1
|
APN |
19 |
41,634,579 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02312:Slit1
|
APN |
19 |
41,590,119 (GRCm39) |
missense |
possibly damaging |
0.66 |
IGL02398:Slit1
|
APN |
19 |
41,590,676 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02542:Slit1
|
APN |
19 |
41,615,687 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02559:Slit1
|
APN |
19 |
41,709,524 (GRCm39) |
missense |
probably benign |
0.01 |
IGL02609:Slit1
|
APN |
19 |
41,590,743 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02623:Slit1
|
APN |
19 |
41,640,122 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL02729:Slit1
|
APN |
19 |
41,591,773 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03230:Slit1
|
APN |
19 |
41,717,524 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03387:Slit1
|
APN |
19 |
41,591,881 (GRCm39) |
missense |
possibly damaging |
0.57 |
PIT4576001:Slit1
|
UTSW |
19 |
41,612,988 (GRCm39) |
missense |
possibly damaging |
0.52 |
R0366:Slit1
|
UTSW |
19 |
41,599,470 (GRCm39) |
missense |
probably damaging |
1.00 |
R0432:Slit1
|
UTSW |
19 |
41,731,732 (GRCm39) |
missense |
probably damaging |
0.98 |
R0496:Slit1
|
UTSW |
19 |
41,596,750 (GRCm39) |
splice site |
probably benign |
|
R0722:Slit1
|
UTSW |
19 |
41,596,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R1468:Slit1
|
UTSW |
19 |
41,596,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R1468:Slit1
|
UTSW |
19 |
41,596,823 (GRCm39) |
missense |
probably damaging |
1.00 |
R1488:Slit1
|
UTSW |
19 |
41,596,824 (GRCm39) |
missense |
probably damaging |
1.00 |
R1615:Slit1
|
UTSW |
19 |
41,639,110 (GRCm39) |
splice site |
probably benign |
|
R1694:Slit1
|
UTSW |
19 |
41,626,031 (GRCm39) |
missense |
possibly damaging |
0.69 |
R1762:Slit1
|
UTSW |
19 |
41,591,774 (GRCm39) |
missense |
probably damaging |
1.00 |
R1842:Slit1
|
UTSW |
19 |
41,709,477 (GRCm39) |
critical splice donor site |
probably null |
|
R1940:Slit1
|
UTSW |
19 |
41,619,215 (GRCm39) |
missense |
probably damaging |
1.00 |
R2087:Slit1
|
UTSW |
19 |
41,625,922 (GRCm39) |
missense |
probably benign |
0.00 |
R2094:Slit1
|
UTSW |
19 |
41,594,819 (GRCm39) |
missense |
probably damaging |
0.99 |
R2095:Slit1
|
UTSW |
19 |
41,594,819 (GRCm39) |
missense |
probably damaging |
0.99 |
R2104:Slit1
|
UTSW |
19 |
41,590,686 (GRCm39) |
missense |
possibly damaging |
0.69 |
R2305:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2972:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2973:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R2974:Slit1
|
UTSW |
19 |
41,599,455 (GRCm39) |
missense |
probably benign |
0.03 |
R3159:Slit1
|
UTSW |
19 |
41,592,812 (GRCm39) |
missense |
probably benign |
|
R3752:Slit1
|
UTSW |
19 |
41,635,406 (GRCm39) |
critical splice donor site |
probably null |
|
R4095:Slit1
|
UTSW |
19 |
41,596,925 (GRCm39) |
intron |
probably benign |
|
R4282:Slit1
|
UTSW |
19 |
41,602,856 (GRCm39) |
missense |
probably benign |
|
R4417:Slit1
|
UTSW |
19 |
41,602,908 (GRCm39) |
missense |
probably damaging |
1.00 |
R4607:Slit1
|
UTSW |
19 |
41,605,232 (GRCm39) |
missense |
probably benign |
0.10 |
R4729:Slit1
|
UTSW |
19 |
41,635,459 (GRCm39) |
missense |
probably damaging |
1.00 |
R4756:Slit1
|
UTSW |
19 |
41,637,452 (GRCm39) |
missense |
probably damaging |
1.00 |
R4764:Slit1
|
UTSW |
19 |
41,709,483 (GRCm39) |
nonsense |
probably null |
|
R4849:Slit1
|
UTSW |
19 |
41,637,983 (GRCm39) |
missense |
probably benign |
0.17 |
R4874:Slit1
|
UTSW |
19 |
41,717,493 (GRCm39) |
critical splice donor site |
probably null |
|
R5581:Slit1
|
UTSW |
19 |
41,605,102 (GRCm39) |
critical splice donor site |
probably null |
|
R5699:Slit1
|
UTSW |
19 |
41,613,959 (GRCm39) |
critical splice donor site |
probably null |
|
R5888:Slit1
|
UTSW |
19 |
41,731,735 (GRCm39) |
missense |
probably damaging |
1.00 |
R5906:Slit1
|
UTSW |
19 |
41,594,813 (GRCm39) |
missense |
probably damaging |
1.00 |
R6176:Slit1
|
UTSW |
19 |
41,626,034 (GRCm39) |
missense |
probably damaging |
1.00 |
R6277:Slit1
|
UTSW |
19 |
41,588,948 (GRCm39) |
missense |
possibly damaging |
0.81 |
R6702:Slit1
|
UTSW |
19 |
41,603,309 (GRCm39) |
missense |
possibly damaging |
0.95 |
R6860:Slit1
|
UTSW |
19 |
41,605,154 (GRCm39) |
missense |
probably benign |
0.10 |
R7015:Slit1
|
UTSW |
19 |
41,618,325 (GRCm39) |
nonsense |
probably null |
|
R7172:Slit1
|
UTSW |
19 |
41,623,105 (GRCm39) |
missense |
probably damaging |
1.00 |
R7512:Slit1
|
UTSW |
19 |
41,589,074 (GRCm39) |
missense |
probably damaging |
1.00 |
R7568:Slit1
|
UTSW |
19 |
41,590,074 (GRCm39) |
missense |
probably damaging |
1.00 |
R7614:Slit1
|
UTSW |
19 |
41,622,639 (GRCm39) |
missense |
probably damaging |
1.00 |
R7650:Slit1
|
UTSW |
19 |
41,618,363 (GRCm39) |
missense |
probably damaging |
1.00 |
R7687:Slit1
|
UTSW |
19 |
41,639,128 (GRCm39) |
missense |
probably benign |
0.03 |
R7732:Slit1
|
UTSW |
19 |
41,592,847 (GRCm39) |
missense |
probably benign |
0.01 |
R7947:Slit1
|
UTSW |
19 |
41,599,248 (GRCm39) |
missense |
probably benign |
|
R7947:Slit1
|
UTSW |
19 |
41,599,247 (GRCm39) |
missense |
probably damaging |
1.00 |
R8171:Slit1
|
UTSW |
19 |
41,715,512 (GRCm39) |
missense |
probably damaging |
0.97 |
R8217:Slit1
|
UTSW |
19 |
41,612,959 (GRCm39) |
missense |
possibly damaging |
0.60 |
R8355:Slit1
|
UTSW |
19 |
41,634,473 (GRCm39) |
missense |
probably damaging |
1.00 |
R9025:Slit1
|
UTSW |
19 |
41,612,968 (GRCm39) |
missense |
probably benign |
0.01 |
R9124:Slit1
|
UTSW |
19 |
41,594,951 (GRCm39) |
missense |
probably benign |
0.02 |
R9288:Slit1
|
UTSW |
19 |
41,613,144 (GRCm39) |
intron |
probably benign |
|
R9343:Slit1
|
UTSW |
19 |
41,615,737 (GRCm39) |
missense |
probably damaging |
1.00 |
R9435:Slit1
|
UTSW |
19 |
41,591,764 (GRCm39) |
critical splice donor site |
probably null |
|
R9563:Slit1
|
UTSW |
19 |
41,596,874 (GRCm39) |
missense |
probably damaging |
1.00 |
R9564:Slit1
|
UTSW |
19 |
41,591,861 (GRCm39) |
missense |
probably benign |
0.16 |
R9595:Slit1
|
UTSW |
19 |
41,637,851 (GRCm39) |
missense |
probably damaging |
1.00 |
R9667:Slit1
|
UTSW |
19 |
41,731,832 (GRCm39) |
nonsense |
probably null |
|
X0023:Slit1
|
UTSW |
19 |
41,590,079 (GRCm39) |
missense |
probably benign |
|
|
Predicted Primers |
PCR Primer
(F):5'- TGATGGTCACCTCTTGGCTC -3'
(R):5'- CATGTGGGCTCTAGAAATACAACC -3'
Sequencing Primer
(F):5'- TGGCTCATTTCCTATGCATAGC -3'
(R):5'- GGGCTCTAGAAATACAACCCTAATAC -3'
|
Posted On |
2014-06-23 |