Mutagenetix > Incidental Mutation

Incidental Mutation 'R1845:Ntn4'

207661

Institutional Source

Beutler Lab

Gene Symbol

Ntn4

Ensembl Gene

ENSMUSG00000020019

Gene Name

netrin 4

Synonyms

beta-netrin

MMRRC Submission

039870-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1845 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

93476911-93581834 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 93543215 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 314 (R314W)

Ref Sequence

ENSEMBL: ENSMUSP00000020204 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020204]

AlphaFold

Q9JI33

Predicted Effect

probably damaging
Transcript: ENSMUST00000020204
AA Change: R314W

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000020204
Gene: ENSMUSG00000020019
AA Change: R314W

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
LamNT	28	260	6.48e-55	SMART
EGF_Lam	262	329	5.83e-7	SMART
EGF_Lam	332	392	3.32e-11	SMART
EGF_Lam	395	446	3.73e-14	SMART
C345C	516	625	5.58e-25	SMART

Meta Mutation Damage Score

0.6651

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.0%
20x: 91.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the netrin family of proteins, which function in various biological processes including axon guidance, tumorogenesis, and angiogenesis. Netrins are laminin-related proteins that have an N-terminal laminin-type domain, epidermal growth factor-like repeat domain, and a positively charged heparin-binding domain at the C-terminus. The protein encoded by this gene is involved in processes including neurite growth and migration, angiogenesis and mural cell adhesion to endothelial cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2016]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased cell proliferation in the cornea without an increase in corneal thickness and increased microvessel branching in the middle levels of the retina. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110038F14Rik	CGGG	CGGGGGG	15: 76,833,863 (GRCm39)		probably benign	Het
Abca17	A	T	17: 24,486,690 (GRCm39)	C1446S	probably damaging	Het
Asb16	C	A	11: 102,167,582 (GRCm39)	A316E	possibly damaging	Het
Axdnd1	C	T	1: 156,204,114 (GRCm39)	V384I	possibly damaging	Het
BC024139	A	T	15: 76,009,461 (GRCm39)	L207*	probably null	Het
Bcl3	T	G	7: 19,543,552 (GRCm39)	S305R	probably damaging	Het
Cachd1	T	C	4: 100,634,555 (GRCm39)	V77A	probably benign	Het
Cd101	C	T	3: 100,936,764 (GRCm39)		probably null	Het
Cela1	T	C	15: 100,583,048 (GRCm39)	N64S	probably benign	Het
Cep128	T	C	12: 91,256,372 (GRCm39)	D366G	probably benign	Het
Col12a1	A	G	9: 79,604,823 (GRCm39)	V675A	probably benign	Het
Copg1	A	G	6: 87,870,800 (GRCm39)	Y201C	probably damaging	Het
Cyp24a1	T	C	2: 170,329,837 (GRCm39)	R372G	probably benign	Het
Dcaf1	A	C	9: 106,729,161 (GRCm39)	I567L	probably benign	Het
Dcn	A	G	10: 97,342,536 (GRCm39)	D164G	probably benign	Het
Dnase2a	T	A	8: 85,635,951 (GRCm39)	H113Q	probably benign	Het
Espl1	T	C	15: 102,207,448 (GRCm39)	V304A	probably benign	Het
Fam193a	A	G	5: 34,600,716 (GRCm39)	D315G	possibly damaging	Het
Fkbp8	T	A	8: 70,983,685 (GRCm39)		probably null	Het
Foxp4	T	A	17: 48,188,884 (GRCm39)	T321S	probably null	Het
Fut10	A	G	8: 31,726,328 (GRCm39)	N361S	probably damaging	Het
Gyg1	A	T	3: 20,205,286 (GRCm39)	V94D	probably damaging	Het
Has2	T	C	15: 56,531,974 (GRCm39)	K247R	probably damaging	Het
Helz2	G	T	2: 180,873,878 (GRCm39)	D2205E	probably benign	Het
Hps6	T	A	19: 45,993,409 (GRCm39)	S449T	probably benign	Het
Ints10	T	C	8: 69,247,323 (GRCm39)	Y64H	probably damaging	Het
Kalrn	T	C	16: 34,177,331 (GRCm39)	H278R	probably damaging	Het
Klhdc8a	T	C	1: 132,231,548 (GRCm39)	V280A	possibly damaging	Het
Klk1b5	A	G	7: 43,869,549 (GRCm39)	M210V	probably benign	Het
Kmt2c	G	A	5: 25,578,434 (GRCm39)	A614V	probably benign	Het
Lck	T	A	4: 129,451,879 (GRCm39)	I45F	probably benign	Het
Lin7a	A	C	10: 107,247,920 (GRCm39)	E75A	probably damaging	Het
Lrp1	A	T	10: 127,414,542 (GRCm39)	C1070S	probably damaging	Het
Mapk8ip3	G	T	17: 25,133,557 (GRCm39)	N289K	probably benign	Het
Mbtps1	T	C	8: 120,249,232 (GRCm39)	D686G	probably benign	Het
Mknk1	T	A	4: 115,730,428 (GRCm39)	C178*	probably null	Het
Mtmr6	A	G	14: 60,534,184 (GRCm39)	N474S	probably damaging	Het
Mvb12b	A	G	2: 33,730,169 (GRCm39)		probably null	Het
Myh6	T	C	14: 55,182,131 (GRCm39)	K1759R	probably damaging	Het
Nfatc1	T	C	18: 80,678,746 (GRCm39)	K881E	possibly damaging	Het
Nlrp10	A	G	7: 108,526,248 (GRCm39)	F30S	probably damaging	Het
Nop14	G	T	5: 34,807,672 (GRCm39)	A430E	possibly damaging	Het
Or1j18	A	T	2: 36,624,854 (GRCm39)	I174F	probably damaging	Het
Or4c107	A	G	2: 88,789,211 (GRCm39)	I134V	probably damaging	Het
Or4c108	A	G	2: 88,803,482 (GRCm39)	V251A	probably benign	Het
Or6c205	A	G	10: 129,086,463 (GRCm39)	E20G	probably benign	Het
Or6c88	A	T	10: 129,407,217 (GRCm39)	Q231L	probably damaging	Het
Or7g17	A	T	9: 18,768,782 (GRCm39)	Y287F	possibly damaging	Het
Osbpl7	C	A	11: 96,949,954 (GRCm39)	S378R	probably damaging	Het
Otof	A	T	5: 30,529,067 (GRCm39)	Y1775*	probably null	Het
Parp16	T	C	9: 65,122,876 (GRCm39)	S46P	possibly damaging	Het
Pdlim2	C	T	14: 70,402,228 (GRCm39)	R296H	probably damaging	Het
Pi16	A	T	17: 29,538,361 (GRCm39)	Q58L	possibly damaging	Het
Pld3	C	A	7: 27,238,877 (GRCm39)	M190I	probably benign	Het
Plscr4	T	G	9: 92,372,099 (GRCm39)	I290S	probably damaging	Het
Ppip5k2	T	C	1: 97,651,531 (GRCm39)	D928G	possibly damaging	Het
Ppp1r13l	T	A	7: 19,102,536 (GRCm39)	L15Q	probably damaging	Het
Prorp	T	A	12: 55,351,117 (GRCm39)	I142N	possibly damaging	Het
Ptpn14	C	A	1: 189,571,699 (GRCm39)	S263R	possibly damaging	Het
Sema7a	G	A	9: 57,862,182 (GRCm39)	V178I	possibly damaging	Het
Sesn2	A	T	4: 132,224,381 (GRCm39)	Y342*	probably null	Het
Shroom3	G	T	5: 93,090,945 (GRCm39)	V1151F	probably damaging	Het
Sltm	A	G	9: 70,450,314 (GRCm39)	N38S	possibly damaging	Het
Smg1	T	C	7: 117,753,845 (GRCm39)		probably benign	Het
Spsb1	A	T	4: 149,991,367 (GRCm39)	V67E	probably damaging	Het
Suox	A	G	10: 128,506,408 (GRCm39)	V540A	possibly damaging	Het
Tbc1d12	T	A	19: 38,899,529 (GRCm39)	I483N	probably damaging	Het
Tbcb	A	T	7: 29,923,924 (GRCm39)	D198E	possibly damaging	Het
Tbce	T	C	13: 14,194,294 (GRCm39)	K122E	probably benign	Het
Tcap	T	A	11: 98,275,205 (GRCm39)	L113H	probably damaging	Het
Thsd7a	A	T	6: 12,321,040 (GRCm39)	I1545N	probably damaging	Het
Tmed10	T	C	12: 85,421,277 (GRCm39)	T55A	possibly damaging	Het
Tmem268	T	A	4: 63,498,180 (GRCm39)	V200D	probably damaging	Het
Tmem45b	A	C	9: 31,342,651 (GRCm39)	I50M	probably damaging	Het
Trp53bp2	T	C	1: 182,286,468 (GRCm39)	W1103R	probably damaging	Het
Ttn	C	T	2: 76,594,377 (GRCm39)	V20524M	probably damaging	Het
Ulk2	A	T	11: 61,703,564 (GRCm39)	N379K	probably benign	Het
Vmn1r59	A	G	7: 5,457,553 (GRCm39)	V69A	probably benign	Het
Vmn2r10	A	T	5: 109,149,861 (GRCm39)	Y394*	probably null	Het
Zfp212	T	C	6: 47,908,475 (GRCm39)	S485P	probably benign	Het
Zfp512b	A	T	2: 181,227,528 (GRCm39)	C776S	probably damaging	Het
Zfp518b	A	G	5: 38,829,084 (GRCm39)	Y974H	probably damaging	Het

Other mutations in Ntn4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02052:Ntn4	APN	10	93,543,211 (GRCm39)	missense	probably damaging	1.00
IGL02212:Ntn4	APN	10	93,480,711 (GRCm39)	missense	possibly damaging	0.50
IGL02698:Ntn4	APN	10	93,480,521 (GRCm39)	missense	probably benign	0.19
IGL02752:Ntn4	APN	10	93,546,421 (GRCm39)	missense	possibly damaging	0.84
PIT4468001:Ntn4	UTSW	10	93,480,587 (GRCm39)	missense	probably damaging	0.99
R0131:Ntn4	UTSW	10	93,480,569 (GRCm39)	missense	possibly damaging	0.89
R0131:Ntn4	UTSW	10	93,480,569 (GRCm39)	missense	possibly damaging	0.89
R0132:Ntn4	UTSW	10	93,480,569 (GRCm39)	missense	possibly damaging	0.89
R0419:Ntn4	UTSW	10	93,518,291 (GRCm39)	missense	probably benign	0.04
R1304:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1306:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1307:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1308:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1619:Ntn4	UTSW	10	93,480,596 (GRCm39)	missense	probably damaging	1.00
R1645:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1664:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1695:Ntn4	UTSW	10	93,569,464 (GRCm39)	splice site	probably null
R1796:Ntn4	UTSW	10	93,581,633 (GRCm39)	missense	probably damaging	1.00
R1806:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1856:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1872:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1879:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1901:Ntn4	UTSW	10	93,543,234 (GRCm39)	missense	possibly damaging	0.93
R1902:Ntn4	UTSW	10	93,543,234 (GRCm39)	missense	possibly damaging	0.93
R1925:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1926:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R1927:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R2060:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R2113:Ntn4	UTSW	10	93,480,701 (GRCm39)	missense	probably damaging	1.00
R2202:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R2203:Ntn4	UTSW	10	93,543,215 (GRCm39)	missense	probably damaging	0.99
R2975:Ntn4	UTSW	10	93,480,753 (GRCm39)	missense	probably damaging	1.00
R4277:Ntn4	UTSW	10	93,577,072 (GRCm39)	missense	possibly damaging	0.95
R4805:Ntn4	UTSW	10	93,480,362 (GRCm39)	missense	probably damaging	0.99
R4806:Ntn4	UTSW	10	93,480,362 (GRCm39)	missense	probably damaging	0.99
R4807:Ntn4	UTSW	10	93,480,362 (GRCm39)	missense	probably damaging	0.99
R5818:Ntn4	UTSW	10	93,480,626 (GRCm39)	missense	probably benign	0.40
R6048:Ntn4	UTSW	10	93,543,128 (GRCm39)	splice site	probably null
R6051:Ntn4	UTSW	10	93,581,657 (GRCm39)	missense	probably benign
R6346:Ntn4	UTSW	10	93,480,723 (GRCm39)	missense	probably damaging	1.00
R6752:Ntn4	UTSW	10	93,570,037 (GRCm39)	missense	probably benign
R7196:Ntn4	UTSW	10	93,569,576 (GRCm39)	missense	probably benign	0.01
R7240:Ntn4	UTSW	10	93,581,603 (GRCm39)	missense	probably damaging	0.99
R7365:Ntn4	UTSW	10	93,480,666 (GRCm39)	missense	probably damaging	1.00
R7374:Ntn4	UTSW	10	93,518,434 (GRCm39)	missense	probably benign
R7505:Ntn4	UTSW	10	93,543,146 (GRCm39)	missense	probably damaging	1.00
R7509:Ntn4	UTSW	10	93,546,430 (GRCm39)	missense	probably benign	0.01
R7726:Ntn4	UTSW	10	93,569,544 (GRCm39)	missense	possibly damaging	0.82
R7957:Ntn4	UTSW	10	93,480,335 (GRCm39)	splice site	probably benign
R8092:Ntn4	UTSW	10	93,576,918 (GRCm39)	missense	probably damaging	0.97
R8202:Ntn4	UTSW	10	93,480,765 (GRCm39)	missense	possibly damaging	0.88
R8508:Ntn4	UTSW	10	93,576,966 (GRCm39)	missense	possibly damaging	0.48
R9008:Ntn4	UTSW	10	93,569,466 (GRCm39)	splice site	probably benign
R9010:Ntn4	UTSW	10	93,480,506 (GRCm39)	missense
R9115:Ntn4	UTSW	10	93,569,675 (GRCm39)	missense	probably benign
R9415:Ntn4	UTSW	10	93,480,488 (GRCm39)	missense	probably benign	0.00
RF045:Ntn4	UTSW	10	93,546,487 (GRCm39)	missense	possibly damaging	0.95
X0024:Ntn4	UTSW	10	93,480,833 (GRCm39)	missense	probably damaging	1.00
Z1176:Ntn4	UTSW	10	93,577,015 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCCTTACAGATAAATGGGTATGAAG -3'
(R):5'- ACATTCTTGGCTACTCAGGCC -3'

Sequencing Primer
(F):5'- AAGAAGTTGAAGGGAGGGTTTCTTTC -3'
(R):5'- ACTGCAGGCTGTTTCCAACG -3'

Posted On

2014-06-23