Mutagenetix > Incidental Mutation

Incidental Mutation 'R1845:Has2'

207679

Institutional Source

Beutler Lab

Gene Symbol

Has2

Ensembl Gene

ENSMUSG00000022367

Gene Name

hyaluronan synthase 2

Synonyms

MMRRC Submission

039870-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1845 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

56529023-56557935 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 56531974 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Arginine at position 247 (K247R)

Ref Sequence

ENSEMBL: ENSMUSP00000062212 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050544]

AlphaFold

P70312

Predicted Effect

probably damaging
Transcript: ENSMUST00000050544
AA Change: K247R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000062212
Gene: ENSMUSG00000022367
AA Change: K247R

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
transmembrane domain	44	66	N/A	INTRINSIC
Pfam:Glycos_transf_2	86	156	1.7e-7	PFAM
Pfam:Glyco_tranf_2_3	159	357	1.2e-17	PFAM
Pfam:Chitin_synth_2	193	464	1.9e-17	PFAM
Pfam:Glyco_trans_2_3	207	534	1.3e-9	PFAM

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.0%
20x: 91.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Hyaluronan or hyaluronic acid (HA) is a high molecular weight unbranched polysaccharide synthesized by a wide variety of organisms from bacteria to mammals, and is a constituent of the extracellular matrix. It consists of alternating glucuronic acid and N-acetylglucosamine residues that are linked by beta-1-3 and beta-1-4 glycosidic bonds. HA is synthesized by membrane-bound synthase at the inner surface of the plasma membrane, and the chains are extruded through pore-like structures into the extracellular space. It serves a variety of functions, including space filling, lubrication of joints, and provision of a matrix through which cells can migrate. HA is actively produced during wound healing and tissue repair to provide a framework for ingrowth of blood vessels and fibroblasts. Changes in the serum concentration of HA are associated with inflammatory and degenerative arthropathies such as rheumatoid arthritis. In addition, the interaction of HA with the leukocyte receptor CD44 is important in tissue-specific homing by leukocytes, and overexpression of HA receptors has been correlated with tumor metastasis. HAS2 is a member of the newly identified vertebrate gene family encoding putative hyaluronan synthases, and its amino acid sequence shows significant homology to glycosaminoglycan synthetase (DG42) from Xenopus laevis, and human and murine hyaluronan synthase 1. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a targeted mutation die during midgestation with severe defects in yolk sac and systemic vasculature, including pericardial edema, compaction of the extracellular space, and absence of endocardial cushions and trabeculae. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110038F14Rik	CGGG	CGGGGGG	15: 76,833,863 (GRCm39)		probably benign	Het
Abca17	A	T	17: 24,486,690 (GRCm39)	C1446S	probably damaging	Het
Asb16	C	A	11: 102,167,582 (GRCm39)	A316E	possibly damaging	Het
Axdnd1	C	T	1: 156,204,114 (GRCm39)	V384I	possibly damaging	Het
BC024139	A	T	15: 76,009,461 (GRCm39)	L207*	probably null	Het
Bcl3	T	G	7: 19,543,552 (GRCm39)	S305R	probably damaging	Het
Cachd1	T	C	4: 100,634,555 (GRCm39)	V77A	probably benign	Het
Cd101	C	T	3: 100,936,764 (GRCm39)		probably null	Het
Cela1	T	C	15: 100,583,048 (GRCm39)	N64S	probably benign	Het
Cep128	T	C	12: 91,256,372 (GRCm39)	D366G	probably benign	Het
Col12a1	A	G	9: 79,604,823 (GRCm39)	V675A	probably benign	Het
Copg1	A	G	6: 87,870,800 (GRCm39)	Y201C	probably damaging	Het
Cyp24a1	T	C	2: 170,329,837 (GRCm39)	R372G	probably benign	Het
Dcaf1	A	C	9: 106,729,161 (GRCm39)	I567L	probably benign	Het
Dcn	A	G	10: 97,342,536 (GRCm39)	D164G	probably benign	Het
Dnase2a	T	A	8: 85,635,951 (GRCm39)	H113Q	probably benign	Het
Espl1	T	C	15: 102,207,448 (GRCm39)	V304A	probably benign	Het
Fam193a	A	G	5: 34,600,716 (GRCm39)	D315G	possibly damaging	Het
Fkbp8	T	A	8: 70,983,685 (GRCm39)		probably null	Het
Foxp4	T	A	17: 48,188,884 (GRCm39)	T321S	probably null	Het
Fut10	A	G	8: 31,726,328 (GRCm39)	N361S	probably damaging	Het
Gyg1	A	T	3: 20,205,286 (GRCm39)	V94D	probably damaging	Het
Helz2	G	T	2: 180,873,878 (GRCm39)	D2205E	probably benign	Het
Hps6	T	A	19: 45,993,409 (GRCm39)	S449T	probably benign	Het
Ints10	T	C	8: 69,247,323 (GRCm39)	Y64H	probably damaging	Het
Kalrn	T	C	16: 34,177,331 (GRCm39)	H278R	probably damaging	Het
Klhdc8a	T	C	1: 132,231,548 (GRCm39)	V280A	possibly damaging	Het
Klk1b5	A	G	7: 43,869,549 (GRCm39)	M210V	probably benign	Het
Kmt2c	G	A	5: 25,578,434 (GRCm39)	A614V	probably benign	Het
Lck	T	A	4: 129,451,879 (GRCm39)	I45F	probably benign	Het
Lin7a	A	C	10: 107,247,920 (GRCm39)	E75A	probably damaging	Het
Lrp1	A	T	10: 127,414,542 (GRCm39)	C1070S	probably damaging	Het
Mapk8ip3	G	T	17: 25,133,557 (GRCm39)	N289K	probably benign	Het
Mbtps1	T	C	8: 120,249,232 (GRCm39)	D686G	probably benign	Het
Mknk1	T	A	4: 115,730,428 (GRCm39)	C178*	probably null	Het
Mtmr6	A	G	14: 60,534,184 (GRCm39)	N474S	probably damaging	Het
Mvb12b	A	G	2: 33,730,169 (GRCm39)		probably null	Het
Myh6	T	C	14: 55,182,131 (GRCm39)	K1759R	probably damaging	Het
Nfatc1	T	C	18: 80,678,746 (GRCm39)	K881E	possibly damaging	Het
Nlrp10	A	G	7: 108,526,248 (GRCm39)	F30S	probably damaging	Het
Nop14	G	T	5: 34,807,672 (GRCm39)	A430E	possibly damaging	Het
Ntn4	C	T	10: 93,543,215 (GRCm39)	R314W	probably damaging	Het
Or1j18	A	T	2: 36,624,854 (GRCm39)	I174F	probably damaging	Het
Or4c107	A	G	2: 88,789,211 (GRCm39)	I134V	probably damaging	Het
Or4c108	A	G	2: 88,803,482 (GRCm39)	V251A	probably benign	Het
Or6c205	A	G	10: 129,086,463 (GRCm39)	E20G	probably benign	Het
Or6c88	A	T	10: 129,407,217 (GRCm39)	Q231L	probably damaging	Het
Or7g17	A	T	9: 18,768,782 (GRCm39)	Y287F	possibly damaging	Het
Osbpl7	C	A	11: 96,949,954 (GRCm39)	S378R	probably damaging	Het
Otof	A	T	5: 30,529,067 (GRCm39)	Y1775*	probably null	Het
Parp16	T	C	9: 65,122,876 (GRCm39)	S46P	possibly damaging	Het
Pdlim2	C	T	14: 70,402,228 (GRCm39)	R296H	probably damaging	Het
Pi16	A	T	17: 29,538,361 (GRCm39)	Q58L	possibly damaging	Het
Pld3	C	A	7: 27,238,877 (GRCm39)	M190I	probably benign	Het
Plscr4	T	G	9: 92,372,099 (GRCm39)	I290S	probably damaging	Het
Ppip5k2	T	C	1: 97,651,531 (GRCm39)	D928G	possibly damaging	Het
Ppp1r13l	T	A	7: 19,102,536 (GRCm39)	L15Q	probably damaging	Het
Prorp	T	A	12: 55,351,117 (GRCm39)	I142N	possibly damaging	Het
Ptpn14	C	A	1: 189,571,699 (GRCm39)	S263R	possibly damaging	Het
Sema7a	G	A	9: 57,862,182 (GRCm39)	V178I	possibly damaging	Het
Sesn2	A	T	4: 132,224,381 (GRCm39)	Y342*	probably null	Het
Shroom3	G	T	5: 93,090,945 (GRCm39)	V1151F	probably damaging	Het
Sltm	A	G	9: 70,450,314 (GRCm39)	N38S	possibly damaging	Het
Smg1	T	C	7: 117,753,845 (GRCm39)		probably benign	Het
Spsb1	A	T	4: 149,991,367 (GRCm39)	V67E	probably damaging	Het
Suox	A	G	10: 128,506,408 (GRCm39)	V540A	possibly damaging	Het
Tbc1d12	T	A	19: 38,899,529 (GRCm39)	I483N	probably damaging	Het
Tbcb	A	T	7: 29,923,924 (GRCm39)	D198E	possibly damaging	Het
Tbce	T	C	13: 14,194,294 (GRCm39)	K122E	probably benign	Het
Tcap	T	A	11: 98,275,205 (GRCm39)	L113H	probably damaging	Het
Thsd7a	A	T	6: 12,321,040 (GRCm39)	I1545N	probably damaging	Het
Tmed10	T	C	12: 85,421,277 (GRCm39)	T55A	possibly damaging	Het
Tmem268	T	A	4: 63,498,180 (GRCm39)	V200D	probably damaging	Het
Tmem45b	A	C	9: 31,342,651 (GRCm39)	I50M	probably damaging	Het
Trp53bp2	T	C	1: 182,286,468 (GRCm39)	W1103R	probably damaging	Het
Ttn	C	T	2: 76,594,377 (GRCm39)	V20524M	probably damaging	Het
Ulk2	A	T	11: 61,703,564 (GRCm39)	N379K	probably benign	Het
Vmn1r59	A	G	7: 5,457,553 (GRCm39)	V69A	probably benign	Het
Vmn2r10	A	T	5: 109,149,861 (GRCm39)	Y394*	probably null	Het
Zfp212	T	C	6: 47,908,475 (GRCm39)	S485P	probably benign	Het
Zfp512b	A	T	2: 181,227,528 (GRCm39)	C776S	probably damaging	Het
Zfp518b	A	G	5: 38,829,084 (GRCm39)	Y974H	probably damaging	Het

Other mutations in Has2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01631:Has2	APN	15	56,545,072 (GRCm39)	missense	possibly damaging	0.51
IGL02027:Has2	APN	15	56,531,567 (GRCm39)	missense	probably damaging	1.00
IGL02178:Has2	APN	15	56,545,456 (GRCm39)	missense	probably damaging	1.00
IGL02493:Has2	APN	15	56,531,320 (GRCm39)	missense	probably damaging	1.00
IGL02533:Has2	APN	15	56,545,091 (GRCm39)	missense	probably benign	0.00
IGL03142:Has2	APN	15	56,545,491 (GRCm39)	missense	possibly damaging	0.92
IGL03240:Has2	APN	15	56,531,656 (GRCm39)	missense	probably damaging	1.00
R0189:Has2	UTSW	15	56,531,831 (GRCm39)	missense	probably damaging	1.00
R0362:Has2	UTSW	15	56,545,057 (GRCm39)	missense	probably damaging	1.00
R1377:Has2	UTSW	15	56,545,202 (GRCm39)	missense	probably damaging	1.00
R1762:Has2	UTSW	15	56,545,006 (GRCm39)	missense	probably benign	0.13
R2012:Has2	UTSW	15	56,531,264 (GRCm39)	missense	probably damaging	1.00
R2190:Has2	UTSW	15	56,531,183 (GRCm39)	missense	probably benign	0.00
R2656:Has2	UTSW	15	56,545,224 (GRCm39)	missense	possibly damaging	0.90
R2966:Has2	UTSW	15	56,545,533 (GRCm39)	missense	probably damaging	1.00
R4361:Has2	UTSW	15	56,545,344 (GRCm39)	missense	probably damaging	1.00
R5698:Has2	UTSW	15	56,531,312 (GRCm39)	missense	probably damaging	1.00
R5826:Has2	UTSW	15	56,531,498 (GRCm39)	missense	probably damaging	1.00
R5883:Has2	UTSW	15	56,531,459 (GRCm39)	missense	possibly damaging	0.49
R5942:Has2	UTSW	15	56,531,192 (GRCm39)	nonsense	probably null
R6433:Has2	UTSW	15	56,531,194 (GRCm39)	missense	possibly damaging	0.79
R6560:Has2	UTSW	15	56,531,660 (GRCm39)	missense	probably damaging	1.00
R6603:Has2	UTSW	15	56,531,968 (GRCm39)	missense	probably damaging	1.00
R7094:Has2	UTSW	15	56,545,017 (GRCm39)	missense	probably damaging	1.00
R7597:Has2	UTSW	15	56,531,817 (GRCm39)	missense	probably damaging	1.00
R7738:Has2	UTSW	15	56,531,108 (GRCm39)	missense	possibly damaging	0.89
R8060:Has2	UTSW	15	56,533,341 (GRCm39)	missense	probably benign	0.00
R8145:Has2	UTSW	15	56,545,175 (GRCm39)	missense	probably benign
R8915:Has2	UTSW	15	56,531,885 (GRCm39)	missense	probably damaging	1.00
R8964:Has2	UTSW	15	56,531,061 (GRCm39)	missense	probably damaging	0.96
R9144:Has2	UTSW	15	56,545,588 (GRCm39)	missense	probably benign	0.03
R9411:Has2	UTSW	15	56,531,306 (GRCm39)	missense	possibly damaging	0.62
R9416:Has2	UTSW	15	56,531,684 (GRCm39)	missense	probably damaging	1.00
R9551:Has2	UTSW	15	56,531,090 (GRCm39)	missense	probably benign	0.00
R9552:Has2	UTSW	15	56,531,090 (GRCm39)	missense	probably benign	0.00
Z1177:Has2	UTSW	15	56,544,979 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GCCTGTCGTCACCAAAACTG -3'
(R):5'- GGACGAGCCCAGATAATATCAC -3'

Sequencing Primer
(F):5'- TGTCGTCACCAAAACTGCATTG -3'
(R):5'- GCCCAGATAATATCACAAGAAGATG -3'

Posted On

2014-06-23