Mutagenetix > Incidental Mutation

Incidental Mutation 'R1846:Chia1'

207706

Institutional Source

Beutler Lab

Gene Symbol

Chia1

Ensembl Gene

ENSMUSG00000062778

Gene Name

chitinase, acidic 1

Synonyms

2200003E03Rik, YNL, AMCase, Chia

MMRRC Submission

039871-MU

Accession Numbers

Is this an essential gene?

Possibly non essential (E-score: 0.314) question?

Stock #

R1846 (G1)

Quality Score

126

Status

Validated

Chromosome

Chromosomal Location

106113229-106132120 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 106130865 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 359 (I359N)

Ref Sequence

ENSEMBL: ENSMUSP00000078134 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000079132] [ENSMUST00000139086]

AlphaFold

Q91XA9

Predicted Effect

probably damaging
Transcript: ENSMUST00000079132
AA Change: I359N

PolyPhen 2 Score 0.978 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000078134
Gene: ENSMUSG00000062778
AA Change: I359N

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Glyco_18	22	365	1.82e-161	SMART
ChtBD2	425	473	2.06e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000139086

SMART Domains

Protein: ENSMUSP00000121967
Gene: ENSMUSG00000062778

Domain	Start	End	E-Value	Type
Glyco_18	3	215	2.24e-47	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143128

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.4%
20x: 92.6%

Validation Efficiency

99% (75/76)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene degrades chitin, which is found in the cell wall of most fungi as well as in arthropods and some nematodes. The encoded protein can also stimulate interleukin 13 expression, and variations in this gene can lead to asthma susceptibility. Several transcript variants encoding a few different isoforms have been found for this gene. [provided by RefSeq, Apr 2012]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700011H14Rik	G	T	14: 49,235,963	L102I	probably damaging	Het
2900092C05Rik	G	A	7: 12,512,882	R63Q	probably benign	Het
Adamts20	A	T	15: 94,345,990	C619S	probably damaging	Het
Alx1	T	C	10: 103,025,304	D121G	possibly damaging	Het
Anks3	A	C	16: 4,953,884	M215R	probably benign	Het
Anxa4	T	A	6: 86,741,911		probably null	Het
Arhgef25	A	G	10: 127,185,864	V222A	probably damaging	Het
Bglap2	A	G	3: 88,378,625		probably benign	Het
Cars2	A	G	8: 11,514,674	V22A	probably benign	Het
Cenpe	T	A	3: 135,239,845	I1040N	probably damaging	Het
Cep170	C	T	1: 176,755,769	D1015N	probably damaging	Het
Crot	A	T	5: 8,988,248	V93E	probably benign	Het
Dab1	C	T	4: 104,731,751	A524V	probably benign	Het
Dnmbp	T	C	19: 43,902,747	I194V	probably damaging	Het
Dock4	T	A	12: 40,733,268	C734S	probably benign	Het
Eif4e3	T	C	6: 99,640,701	S70G	probably benign	Het
Entpd3	G	A	9: 120,558,375	D213N	probably benign	Het
Ern2	T	G	7: 122,176,536	Y445S	probably benign	Het
Fasn	A	G	11: 120,813,307	S1429P	probably benign	Het
Fat4	A	G	3: 38,982,383	I3395V	probably benign	Het
Fbln2	C	A	6: 91,256,417	Q628K	possibly damaging	Het
Fbxo28	T	C	1: 182,326,280	N164D	probably benign	Het
Fez1	T	C	9: 36,867,767	S247P	probably damaging	Het
Gars	A	G	6: 55,063,168	D360G	probably benign	Het
Gcfc2	A	T	6: 81,956,892	Q710L	probably damaging	Het
Ggt5	A	G	10: 75,610,542		probably null	Het
Glp1r	A	G	17: 30,929,935		probably null	Het
Hspa14	T	C	2: 3,491,660	D356G	possibly damaging	Het
Htt	T	A	5: 34,848,944	I1399N	probably damaging	Het
Kmt2e	G	A	5: 23,499,486		probably benign	Het
Krt36	C	A	11: 100,105,548	G17C	probably damaging	Het
Lama2	T	C	10: 27,212,096	E895G	probably damaging	Het
Lamb2	G	A	9: 108,487,387	R1142H	probably benign	Het
Lhcgr	C	T	17: 88,765,147		probably null	Het
Lpin2	A	G	17: 71,225,069	T140A	probably benign	Het
Metap1	A	G	3: 138,480,682		probably benign	Het
Mpeg1	T	C	19: 12,463,122	V648A	probably benign	Het
Mroh2a	A	G	1: 88,258,664	S64G	probably benign	Het
Muc4	T	A	16: 32,752,369	I749N	probably benign	Het
N4bp2	T	C	5: 65,808,519	F1304L	probably damaging	Het
Nup85	A	G	11: 115,568,413	E114G	probably benign	Het
Olfr1258	A	G	2: 89,930,666	T286A	possibly damaging	Het
Olfr1415	A	T	1: 92,491,100	Y218*	probably null	Het
Olfr448	A	G	6: 42,897,320	S290G	probably damaging	Het
Pafah2	GCCCC	GCCCCC	4: 134,425,541		probably null	Het
Parp2	T	A	14: 50,815,386	C145*	probably null	Het
Plpp6	T	C	19: 28,964,280	S94P	probably benign	Het
Polr1a	T	C	6: 71,976,188	I1580T	probably damaging	Het
Polrmt	A	T	10: 79,738,209	V860E	probably damaging	Het
Ppp1r17	A	G	6: 56,022,427	E15G	possibly damaging	Het
Prl7b1	A	T	13: 27,602,848	W133R	probably damaging	Het
Ptk7	A	G	17: 46,576,490		probably null	Het
Rad23b	C	T	4: 55,383,637	Q290*	probably null	Het
Rorb	C	T	19: 18,955,081	E369K	probably damaging	Het
Rusc1	T	C	3: 89,092,145	D110G	probably damaging	Het
Smg7	A	G	1: 152,848,850	S527P	probably damaging	Het
Ssbp2	C	T	13: 91,664,149	P105L	probably damaging	Het
Stt3a	C	T	9: 36,763,385	R34H	probably damaging	Het
Sufu	T	A	19: 46,450,947	I202N	possibly damaging	Het
Thsd7b	G	A	1: 129,613,256	R289Q	probably damaging	Het
Tph1	A	T	7: 46,660,439	S130T	probably damaging	Het
Ttn	A	G	2: 76,945,686	S1671P	probably damaging	Het
Usp4	A	G	9: 108,372,736	I441V	probably benign	Het
Vmn1r8	A	G	6: 57,036,428	N155D	probably benign	Het
Vmn2r115	A	C	17: 23,359,383	K610T	probably damaging	Het
Vmn2r62	G	A	7: 42,789,122	P97S	probably damaging	Het
Zbtb40	T	C	4: 137,007,839	D297G	probably benign	Het
Zfp174	C	A	16: 3,854,735	Q383K	probably benign	Het
Zfp318	T	A	17: 46,413,666	D2198E	probably benign	Het
Zfp628	C	T	7: 4,920,867	P696L	possibly damaging	Het
Zgrf1	T	A	3: 127,615,463	N1695K	probably damaging	Het

Other mutations in Chia1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01917:Chia1	APN	3	106128220	missense	probably damaging	1.00
Pet	UTSW	3	106129022	critical splice donor site	probably null
R0004:Chia1	UTSW	3	106129009	missense	probably damaging	1.00
R0011:Chia1	UTSW	3	106130974	unclassified	probably benign
R0047:Chia1	UTSW	3	106115257	missense	probably damaging	0.99
R0345:Chia1	UTSW	3	106122439	missense	probably damaging	1.00
R0456:Chia1	UTSW	3	106128479	missense	probably damaging	1.00
R0638:Chia1	UTSW	3	106128437	splice site	probably benign
R0847:Chia1	UTSW	3	106131937	missense	probably benign	0.12
R1055:Chia1	UTSW	3	106130883	missense	probably damaging	1.00
R1401:Chia1	UTSW	3	106128939	missense	probably benign	0.00
R1513:Chia1	UTSW	3	106131904	missense	probably benign	0.44
R1882:Chia1	UTSW	3	106128474	missense	probably damaging	1.00
R1914:Chia1	UTSW	3	106128559	missense	probably benign	0.06
R1915:Chia1	UTSW	3	106128559	missense	probably benign	0.06
R2107:Chia1	UTSW	3	106128840	nonsense	probably null
R3969:Chia1	UTSW	3	106121635	splice site	probably null
R3970:Chia1	UTSW	3	106121635	splice site	probably null
R4112:Chia1	UTSW	3	106128528	missense	probably damaging	1.00
R4432:Chia1	UTSW	3	106115325	missense	probably benign	0.03
R4625:Chia1	UTSW	3	106128940	missense	probably benign	0.00
R4748:Chia1	UTSW	3	106122449	missense	probably damaging	1.00
R5805:Chia1	UTSW	3	106128476	missense	probably damaging	0.98
R5906:Chia1	UTSW	3	106131988	missense	probably benign	0.01
R6173:Chia1	UTSW	3	106129022	critical splice donor site	probably null
R6214:Chia1	UTSW	3	106122445	missense	probably damaging	1.00
R6215:Chia1	UTSW	3	106122445	missense	probably damaging	1.00
R6225:Chia1	UTSW	3	106130897	missense	possibly damaging	0.66
R6383:Chia1	UTSW	3	106131811	missense	probably benign
R6423:Chia1	UTSW	3	106128988	missense	possibly damaging	0.60
R6668:Chia1	UTSW	3	106130948	missense	probably damaging	1.00
R6764:Chia1	UTSW	3	106130740	critical splice donor site	probably null
R7030:Chia1	UTSW	3	106115325	missense	probably damaging	1.00
R7221:Chia1	UTSW	3	106131920	missense	probably damaging	1.00
R7265:Chia1	UTSW	3	106128923	missense	probably damaging	1.00
R7343:Chia1	UTSW	3	106132015	makesense	probably null
R7420:Chia1	UTSW	3	106130664	missense	probably benign	0.00
R8933:Chia1	UTSW	3	106129017	nonsense	probably null
R9031:Chia1	UTSW	3	106128461	missense	probably benign	0.00
R9289:Chia1	UTSW	3	106115186	start gained	probably benign
R9581:Chia1	UTSW	3	106128563	missense	possibly damaging	0.50

Predicted Primers

PCR Primer
(F):5'- AAGAAGTGCCCTATGCCTATAAG -3'
(R):5'- GTGAGAATGCCAAGACTGCC -3'

Sequencing Primer
(F):5'- AGCTCCTTGGATTTGCTG -3'
(R):5'- GCCAAGACTGCCTTTAAATTAATAAG -3'

Posted On

2014-06-23