Mutagenetix > Incidental Mutation

Incidental Mutation 'R1851:Chil3'

208064

Institutional Source

Beutler Lab

Gene Symbol

Chil3

Ensembl Gene

ENSMUSG00000040809

Gene Name

chitinase-like 3

Synonyms

Ym1, Chi3l3

MMRRC Submission

039875-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.501) question?

Stock #

R1851 (G1)

Quality Score

Status

Not validated

Chromosome

Chromosomal Location

106054870-106074852 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (1 bp from exon)

DNA Base Change (assembly)

C to T at 106056117 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000053923 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000063062]

AlphaFold

O35744

PDB Structure

THE CRYSTAL STRUCTURE OF NOVEL MAMMALIAN LECTIN YM1 SUGGESTS A SACCHARIDE BINDING SITE [X-RAY DIFFRACTION]
The Crystal Structure of Ym1 at 1.31 A Resolution [X-RAY DIFFRACTION]

Predicted Effect

probably null
Transcript: ENSMUST00000063062

SMART Domains

Protein: ENSMUSP00000053923
Gene: ENSMUSG00000040809

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
Glyco_18	22	365	5.17e-134	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000149836

SMART Domains

Protein: ENSMUSP00000121823
Gene: ENSMUSG00000040809

Domain	Start	End	E-Value	Type
Blast:Glyco_18	2	37	1e-10	BLAST
SCOP:d1goia2	2	44	2e-6	SMART
PDB:1VF8\|A	2	58	3e-28	PDB

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 94.9%
20x: 91.3%

Validation Efficiency

MGI Phenotype

FUNCTION: The protein encoded by this gene is similar to bacterial chitinases but lacks chitinase activity. The encoded protein is thought to function as a lectin and may be involved in inflammation and allergy. [provided by RefSeq, Sep 2015]

Allele List at MGI

Other mutations in this stock

Total: 95 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5730507C01Rik	A	G	12: 18,583,687 (GRCm39)	E225G	possibly damaging	Het
Abcb7	T	C	X: 103,349,005 (GRCm39)	M153V	probably benign	Het
Abi1	A	T	2: 22,840,276 (GRCm39)	V329D	possibly damaging	Het
Ablim3	G	A	18: 61,982,466 (GRCm39)	H160Y	probably benign	Het
Acox3	A	T	5: 35,766,406 (GRCm39)	D624V	possibly damaging	Het
Adam6b	A	G	12: 113,455,442 (GRCm39)	D753G	probably benign	Het
Ago1	C	A	4: 126,333,788 (GRCm39)	R771L	probably benign	Het
Aktip	A	G	8: 91,852,505 (GRCm39)	V217A	possibly damaging	Het
Ankk1	A	C	9: 49,327,150 (GRCm39)	H676Q	probably benign	Het
Arl1	G	C	10: 88,569,408 (GRCm39)		probably benign	Het
Asxl3	T	A	18: 22,650,796 (GRCm39)	D928E	probably damaging	Het
AW209491	T	C	13: 14,811,318 (GRCm39)	V57A	possibly damaging	Het
B3galt4	G	T	17: 34,169,885 (GRCm39)	Q118K	probably benign	Het
Ccdc187	A	T	2: 26,166,080 (GRCm39)	M783K	probably benign	Het
Cdon	T	G	9: 35,394,454 (GRCm39)	M900R	probably damaging	Het
Ceacam5	G	A	7: 17,448,835 (GRCm39)	W67*	probably null	Het
Chd5	A	G	4: 152,462,727 (GRCm39)	S1356G	probably damaging	Het
Chmp7	C	T	14: 69,956,899 (GRCm39)	M336I	probably benign	Het
Cntn1	C	T	15: 92,203,021 (GRCm39)	R768C	probably damaging	Het
Col6a3	T	A	1: 90,735,256 (GRCm39)	I798F	possibly damaging	Het
Cpxcr1	T	A	X: 115,387,758 (GRCm39)	L223*	probably null	Het
Cpz	C	A	5: 35,659,902 (GRCm39)	R581L	possibly damaging	Het
Cxcr2	A	G	1: 74,198,438 (GRCm39)	I311V	probably benign	Het
Cym	T	A	3: 107,126,030 (GRCm39)	I78F	probably benign	Het
Defb8	A	T	8: 19,495,899 (GRCm39)	S54T	probably benign	Het
Dennd4a	A	G	9: 64,769,312 (GRCm39)	T433A	probably damaging	Het
Dhx29	A	G	13: 113,084,815 (GRCm39)	T678A	probably damaging	Het
Dspp	T	C	5: 104,321,951 (GRCm39)		probably null	Het
Enkur	G	T	2: 21,193,988 (GRCm39)	A195E	probably benign	Het
Ero1b	T	A	13: 12,619,292 (GRCm39)	S429T	possibly damaging	Het
Fh1	A	G	1: 175,435,452 (GRCm39)	S344P	probably damaging	Het
Flnc	G	T	6: 29,443,478 (GRCm39)	G553V	probably damaging	Het
Fmo1	A	T	1: 162,657,554 (GRCm39)	L529*	probably null	Het
Frem1	C	A	4: 82,868,737 (GRCm39)	V1415F	probably damaging	Het
Gatb	T	G	3: 85,526,184 (GRCm39)	L354R	probably damaging	Het
Gdpgp1	A	T	7: 79,888,349 (GRCm39)	N127Y	probably damaging	Het
Gpat2	A	G	2: 127,276,739 (GRCm39)	T648A	possibly damaging	Het
Grk6	C	T	13: 55,599,591 (GRCm39)	R225*	probably null	Het
Hells	A	T	19: 38,948,120 (GRCm39)	Q682L	probably null	Het
Hspa5	T	A	2: 34,664,690 (GRCm39)	N381K	possibly damaging	Het
Ighmbp2	T	C	19: 3,312,075 (GRCm39)	N893S	probably benign	Het
Ipo11	A	T	13: 106,948,765 (GRCm39)	V914E	possibly damaging	Het
Lars1	T	C	18: 42,345,673 (GRCm39)	N1001S	probably benign	Het
Lats2	A	G	14: 57,934,912 (GRCm39)	L606P	probably damaging	Het
Map4k1	T	C	7: 28,699,209 (GRCm39)	Y521H	probably benign	Het
Marchf11	T	A	15: 26,387,916 (GRCm39)	V257E	probably damaging	Het
Med23	G	A	10: 24,786,768 (GRCm39)		probably null	Het
Meltf	A	G	16: 31,715,395 (GRCm39)	D696G	probably benign	Het
Ms4a7	T	A	19: 11,301,788 (GRCm39)	M212L	probably benign	Het
Mx1	A	T	16: 97,249,403 (GRCm39)	L608Q	probably damaging	Het
Myh1	T	C	11: 67,095,224 (GRCm39)	Y195H	probably damaging	Het
Napb	G	T	2: 148,548,909 (GRCm39)	H110Q	probably benign	Het
Ngly1	C	T	14: 16,260,585 (GRCm38)	P90S	probably damaging	Het
Nlrp1b	T	A	11: 71,073,442 (GRCm39)	I134L	possibly damaging	Het
Nup210	A	G	6: 90,993,036 (GRCm39)	L1017P	probably damaging	Het
Nup85	T	A	11: 115,472,643 (GRCm39)	I233N	probably damaging	Het
Obsl1	A	G	1: 75,469,537 (GRCm39)	V965A	probably damaging	Het
Or4c12	A	C	2: 89,774,158 (GRCm39)	Y100*	probably null	Het
Or4f6	T	C	2: 111,839,036 (GRCm39)	D165G	probably benign	Het
Or6c5c	T	C	10: 129,299,370 (GRCm39)	L275P	probably damaging	Het
Pak1ip1	A	G	13: 41,164,708 (GRCm39)	T264A	possibly damaging	Het
Pard6g	C	T	18: 80,160,357 (GRCm39)	R157C	probably damaging	Het
Pcdhb7	A	T	18: 37,475,631 (GRCm39)	T256S	possibly damaging	Het
Phrf1	T	C	7: 140,820,831 (GRCm39)	F153L	probably damaging	Het
Pigw	A	T	11: 84,768,874 (GRCm39)	F152I	probably damaging	Het
Pip4k2c	A	G	10: 127,036,744 (GRCm39)	S222P	probably damaging	Het
Pjvk	A	G	2: 76,487,775 (GRCm39)		probably null	Het
Plxnd1	C	T	6: 115,940,875 (GRCm39)	V1355M	probably damaging	Het
Pramel26	T	C	4: 143,539,396 (GRCm39)	I32M	probably benign	Het
Prss22	G	A	17: 24,215,288 (GRCm39)	P163S	probably damaging	Het
Prune2	A	G	19: 17,176,503 (GRCm39)	I154V	probably damaging	Het
Rapgef6	T	A	11: 54,533,637 (GRCm39)	D362E	probably benign	Het
Retreg2	A	G	1: 75,123,319 (GRCm39)	K416E	probably benign	Het
Scn7a	T	C	2: 66,510,635 (GRCm39)	I1256V	probably benign	Het
Sema4d	A	G	13: 51,865,258 (GRCm39)	V362A	possibly damaging	Het
Septin4	T	A	11: 87,459,741 (GRCm39)	D496E	probably damaging	Het
Slc25a34	G	A	4: 141,349,579 (GRCm39)	T192I	probably benign	Het
Tacc3	G	T	5: 33,825,544 (GRCm39)	V425L	probably benign	Het
Tfdp2	A	T	9: 96,179,762 (GRCm39)	K125I	probably damaging	Het
Tjp2	C	T	19: 24,076,899 (GRCm39)	R952Q	possibly damaging	Het
Tk2	G	T	8: 104,975,077 (GRCm39)	S30*	probably null	Het
Tmem74	A	T	15: 43,730,559 (GRCm39)	D161E	probably benign	Het
Tmprss9	G	A	10: 80,728,119 (GRCm39)	V570M	probably damaging	Het
Tnk2	C	A	16: 32,498,280 (GRCm39)	P26Q	probably damaging	Het
Tnpo2	T	G	8: 85,778,401 (GRCm39)	V610G	probably damaging	Het
Trim37	T	C	11: 87,109,132 (GRCm39)	F953S	probably damaging	Het
U2surp	T	A	9: 95,364,150 (GRCm39)	K589*	probably null	Het
Usp2	G	A	9: 43,987,263 (GRCm39)	R187H	probably benign	Het
Vmn2r1	C	T	3: 64,008,926 (GRCm39)	T535I	probably benign	Het
Wdr20rt	T	A	12: 65,273,925 (GRCm39)	S463T	possibly damaging	Het
Zbtb25	C	A	12: 76,396,488 (GRCm39)	G245W	probably damaging	Het
Zc3h14	T	A	12: 98,726,613 (GRCm39)	L27*	probably null	Het
Zfp2	T	C	11: 50,791,915 (GRCm39)	K43E	probably benign	Het
Zfp268	T	G	4: 145,350,820 (GRCm39)		probably benign	Het
Zfp654	A	G	16: 64,605,491 (GRCm39)	Y904H	probably benign	Het

Other mutations in Chil3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00332:Chil3	APN	3	106,056,017 (GRCm39)	missense	probably damaging	1.00
IGL01552:Chil3	APN	3	106,056,164 (GRCm39)	missense	probably damaging	0.98
IGL02538:Chil3	APN	3	106,071,445 (GRCm39)	missense	probably damaging	1.00
PIT4382001:Chil3	UTSW	3	106,055,975 (GRCm39)	missense	probably damaging	1.00
R0145:Chil3	UTSW	3	106,067,794 (GRCm39)	missense	probably damaging	1.00
R0269:Chil3	UTSW	3	106,063,072 (GRCm39)	missense	probably benign	0.00
R0310:Chil3	UTSW	3	106,067,839 (GRCm39)	missense	possibly damaging	0.75
R0453:Chil3	UTSW	3	106,056,221 (GRCm39)	missense	probably benign	0.26
R0541:Chil3	UTSW	3	106,068,548 (GRCm39)	critical splice acceptor site	probably null
R0617:Chil3	UTSW	3	106,063,072 (GRCm39)	missense	probably benign	0.00
R0831:Chil3	UTSW	3	106,057,063 (GRCm39)	missense	probably benign	0.19
R1699:Chil3	UTSW	3	106,067,682 (GRCm39)	critical splice donor site	probably null
R1852:Chil3	UTSW	3	106,056,117 (GRCm39)	critical splice donor site	probably null
R2105:Chil3	UTSW	3	106,067,794 (GRCm39)	missense	possibly damaging	0.73
R2202:Chil3	UTSW	3	106,071,562 (GRCm39)	missense	probably benign	0.11
R2204:Chil3	UTSW	3	106,071,562 (GRCm39)	missense	probably benign	0.11
R2205:Chil3	UTSW	3	106,071,562 (GRCm39)	missense	probably benign	0.11
R4358:Chil3	UTSW	3	106,067,815 (GRCm39)	nonsense	probably null
R4492:Chil3	UTSW	3	106,063,017 (GRCm39)	missense	probably damaging	1.00
R4543:Chil3	UTSW	3	106,067,686 (GRCm39)	missense	probably benign
R4554:Chil3	UTSW	3	106,067,686 (GRCm39)	missense	probably benign
R4930:Chil3	UTSW	3	106,071,524 (GRCm39)	missense	possibly damaging	0.67
R5011:Chil3	UTSW	3	106,057,477 (GRCm39)	missense	possibly damaging	0.46
R5083:Chil3	UTSW	3	106,071,405 (GRCm39)	critical splice donor site	probably null
R5231:Chil3	UTSW	3	106,063,045 (GRCm39)	missense	probably damaging	0.96
R5423:Chil3	UTSW	3	106,055,978 (GRCm39)	missense	probably damaging	1.00
R6804:Chil3	UTSW	3	106,071,495 (GRCm39)	nonsense	probably null
R6859:Chil3	UTSW	3	106,067,730 (GRCm39)	missense	probably benign	0.14
R7218:Chil3	UTSW	3	106,067,853 (GRCm39)	splice site	probably null
R7391:Chil3	UTSW	3	106,071,496 (GRCm39)	missense	probably damaging	1.00
R7426:Chil3	UTSW	3	106,063,022 (GRCm39)	missense	probably benign	0.05
R7582:Chil3	UTSW	3	106,071,572 (GRCm39)	missense	probably damaging	1.00
R7620:Chil3	UTSW	3	106,067,751 (GRCm39)	missense	probably damaging	1.00
R7647:Chil3	UTSW	3	106,056,122 (GRCm39)	missense	possibly damaging	0.73
R7749:Chil3	UTSW	3	106,056,161 (GRCm39)	missense	probably benign	0.22
R7944:Chil3	UTSW	3	106,057,464 (GRCm39)	nonsense	probably null
R8099:Chil3	UTSW	3	106,055,984 (GRCm39)	missense	probably damaging	1.00
R8181:Chil3	UTSW	3	106,057,203 (GRCm39)	missense	probably damaging	0.98
R8859:Chil3	UTSW	3	106,071,440 (GRCm39)	missense	possibly damaging	0.86
R9011:Chil3	UTSW	3	106,057,031 (GRCm39)	nonsense	probably null
R9193:Chil3	UTSW	3	106,063,081 (GRCm39)	missense	possibly damaging	0.90
R9352:Chil3	UTSW	3	106,067,787 (GRCm39)	missense	probably damaging	1.00
R9607:Chil3	UTSW	3	106,067,685 (GRCm39)	missense	probably null	0.01

Predicted Primers

PCR Primer
(F):5'- GAGGGAAATGTCTCTGGTGAC -3'
(R):5'- GTTTACTCTAAGACAAGAAAGGCTC -3'

Sequencing Primer
(F):5'- TGACAGAAAGAACCACTGAAGTC -3'
(R):5'- CTCTAAGACAAGAAAGGCTCTTTAG -3'

Posted On

2014-06-23