Incidental Mutation 'R0681:Slc39a3'
ID 208418
Institutional Source Beutler Lab
Gene Symbol Slc39a3
Ensembl Gene ENSMUSG00000046822
Gene Name solute carrier family 39 (zinc transporter), member 3
Synonyms zip3
MMRRC Submission 038866-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.077) question?
Stock # R0681 (G1)
Quality Score 50
Status Validated
Chromosome 10
Chromosomal Location 80864374-80873169 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to G at 80869565 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Glutamic Acid to Glutamine at position 31 (E31Q)
Ref Sequence ENSEMBL: ENSMUSP00000128256 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000059551] [ENSMUST00000117276] [ENSMUST00000168076]
AlphaFold Q99K24
Predicted Effect probably benign
Transcript: ENSMUST00000059551
AA Change: E31Q

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000057094
Gene: ENSMUSG00000046822
AA Change: E31Q

DomainStartEndE-ValueType
Pfam:Zip 5 313 6.4e-46 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000117276
AA Change: E31Q

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000113147
Gene: ENSMUSG00000046822
AA Change: E31Q

DomainStartEndE-ValueType
Pfam:Zip 5 313 1.9e-53 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000152177
Predicted Effect noncoding transcript
Transcript: ENSMUST00000154877
Predicted Effect probably benign
Transcript: ENSMUST00000168076
AA Change: E31Q

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)
SMART Domains Protein: ENSMUSP00000128256
Gene: ENSMUSG00000046822
AA Change: E31Q

DomainStartEndE-ValueType
Pfam:Zip 5 313 1.9e-53 PFAM
Meta Mutation Damage Score 0.1183 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.8%
  • 10x: 97.5%
  • 20x: 95.3%
Validation Efficiency 100% (68/68)
MGI Phenotype PHENOTYPE: Homozygous null mice stressed with a zinc-deficient diet during pregnancy or at weaning exhibit a subtle increase in the sensitivity to abnormal morphogenesis of the embryo and to depletion of thymic pre-T cells, respectively. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgrl1 G T 8: 84,661,279 (GRCm39) probably benign Het
Adgrv1 C A 13: 81,676,649 (GRCm39) D1341Y probably damaging Het
Ahdc1 T C 4: 132,792,827 (GRCm39) F1356S possibly damaging Het
Cdk13 A G 13: 17,895,882 (GRCm39) probably benign Het
Cfhr1 A T 1: 139,485,249 (GRCm39) S66T probably damaging Het
Cldn6 C A 17: 23,900,167 (GRCm39) Q44K probably damaging Het
Cntnap5c T C 17: 58,612,550 (GRCm39) V863A possibly damaging Het
Col6a4 T A 9: 105,944,343 (GRCm39) K1044* probably null Het
Cyb561d1 A G 3: 108,106,583 (GRCm39) V212A probably benign Het
Cyp1b1 A G 17: 80,021,275 (GRCm39) S156P probably damaging Het
Dock7 G A 4: 98,904,941 (GRCm39) H645Y probably damaging Het
Dpp3 T C 19: 4,964,682 (GRCm39) N542D probably damaging Het
Fastkd3 C T 13: 68,740,047 (GRCm39) probably benign Het
Galnt10 T A 11: 57,660,366 (GRCm39) V268D probably damaging Het
Grb14 G T 2: 64,747,631 (GRCm39) A10E probably damaging Het
Grin2c A G 11: 115,140,479 (GRCm39) V1213A probably benign Het
Grip1 C T 10: 119,846,135 (GRCm39) T570I probably damaging Het
Hif1an T C 19: 44,551,762 (GRCm39) Y71H probably benign Het
Hsd17b11 T A 5: 104,151,072 (GRCm39) I221L probably benign Het
Htra1 A T 7: 130,581,027 (GRCm39) probably benign Het
Igfn1 T C 1: 135,891,591 (GRCm39) E2308G possibly damaging Het
Mapk9 T A 11: 49,760,072 (GRCm39) S129T probably damaging Het
Med22 T C 2: 26,800,391 (GRCm39) T13A probably benign Het
Miox C T 15: 89,220,477 (GRCm39) L189F possibly damaging Het
Mtus1 A T 8: 41,446,554 (GRCm39) L489Q probably damaging Het
Naprt G A 15: 75,765,481 (GRCm39) P120S probably damaging Het
Nwd1 C T 8: 73,388,965 (GRCm39) P172L probably damaging Het
Ogfod2 A G 5: 124,250,907 (GRCm39) E62G probably null Het
Or13a1 A T 6: 116,471,361 (GRCm39) S264C probably damaging Het
Or5b12b A G 19: 12,861,910 (GRCm39) T222A probably damaging Het
Or5b12b T C 19: 12,861,443 (GRCm39) L66P probably damaging Het
Palm A C 10: 79,655,327 (GRCm39) T362P probably benign Het
Pcare T G 17: 72,056,509 (GRCm39) H1056P probably benign Het
Pcdh8 T C 14: 80,007,400 (GRCm39) T388A probably benign Het
Pclo A G 5: 14,725,332 (GRCm39) I1397V unknown Het
Per1 A G 11: 68,992,027 (GRCm39) E127G probably damaging Het
Plekha1 T C 7: 130,502,353 (GRCm39) V30A possibly damaging Het
Pramel24 A T 4: 143,454,622 (GRCm39) T307S probably benign Het
Rab26 A G 17: 24,746,940 (GRCm39) probably benign Het
Rasal2 T C 1: 156,984,750 (GRCm39) D999G possibly damaging Het
Rfx5 C T 3: 94,863,666 (GRCm39) T105I probably damaging Het
Rrp1b T C 17: 32,279,369 (GRCm39) S677P probably damaging Het
Scaf4 G A 16: 90,046,582 (GRCm39) P485S unknown Het
Scn5a A T 9: 119,368,706 (GRCm39) M273K probably damaging Het
Sec22a C T 16: 35,181,926 (GRCm39) probably null Het
Slc10a6 C A 5: 103,760,315 (GRCm39) V227F possibly damaging Het
Spsb1 C T 4: 149,991,374 (GRCm39) V65I probably benign Het
Tdrd7 T A 4: 46,016,879 (GRCm39) M673K probably benign Het
Trim8 C A 19: 46,503,532 (GRCm39) S361R possibly damaging Het
Ucp1 T A 8: 84,021,936 (GRCm39) M256K possibly damaging Het
Vmn1r46 A T 6: 89,953,946 (GRCm39) D265V probably damaging Het
Zbtb5 T C 4: 44,993,787 (GRCm39) I532M probably damaging Het
Other mutations in Slc39a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0398:Slc39a3 UTSW 10 80,869,621 (GRCm39) missense possibly damaging 0.94
R1740:Slc39a3 UTSW 10 80,867,342 (GRCm39) missense probably damaging 0.98
R2360:Slc39a3 UTSW 10 80,867,104 (GRCm39) missense possibly damaging 0.89
R4967:Slc39a3 UTSW 10 80,867,453 (GRCm39) missense possibly damaging 0.63
R4973:Slc39a3 UTSW 10 80,866,796 (GRCm39) missense probably damaging 0.99
R8022:Slc39a3 UTSW 10 80,867,111 (GRCm39) missense probably benign 0.01
R9054:Slc39a3 UTSW 10 80,869,499 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GTATCTGTGTTGGAATCCACGGGAG -3'
(R):5'- TCTGAGCAGAGCCATGAATGCC -3'

Sequencing Primer
(F):5'- cacacacacacacacacac -3'
(R):5'- CATGAATGCCTGGCCCTG -3'
Posted On 2014-06-25