Incidental Mutation 'R1867:Pcdhgc5'
| ID |
208889 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Pcdhgc5
|
| Ensembl Gene |
ENSMUSG00000102543 |
| Gene Name |
protocadherin gamma subfamily C, 5 |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Probably essential
(E-score: 0.795)
|
| Stock # |
R1867 (G1)
|
| Quality Score |
225 |
|
Status
|
Not validated
|
| Chromosome |
18 |
| Chromosomal Location |
37952599-37974926 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to G
at 37954471 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Alanine
at position 582
(S582A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000060949
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000003599]
[ENSMUST00000044851]
[ENSMUST00000055935]
[ENSMUST00000061279]
[ENSMUST00000066140]
[ENSMUST00000066149]
[ENSMUST00000073447]
[ENSMUST00000193414]
[ENSMUST00000076807]
[ENSMUST00000192535]
[ENSMUST00000192931]
[ENSMUST00000193404]
[ENSMUST00000192511]
[ENSMUST00000091935]
[ENSMUST00000192103]
[ENSMUST00000115661]
[ENSMUST00000208907]
[ENSMUST00000194190]
[ENSMUST00000194928]
[ENSMUST00000195823]
[ENSMUST00000193869]
[ENSMUST00000194418]
[ENSMUST00000195363]
[ENSMUST00000195239]
[ENSMUST00000193890]
[ENSMUST00000193941]
[ENSMUST00000194544]
[ENSMUST00000195764]
[ENSMUST00000195112]
|
| AlphaFold |
Q91XW9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000003599
|
| SMART Domains |
Protein: ENSMUSP00000003599
Gene: ENSMUSG00000103088
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
47 |
131 |
8.06e-6 |
SMART |
|
CA
|
155 |
240 |
2.29e-19 |
SMART |
|
CA
|
264 |
345 |
3.36e-26 |
SMART |
|
CA
|
369 |
450 |
4.94e-24 |
SMART |
|
CA
|
474 |
560 |
7.6e-25 |
SMART |
|
CA
|
591 |
672 |
9.18e-10 |
SMART |
|
Pfam:Cadherin_C_2
|
687 |
768 |
3.5e-20 |
PFAM |
|
Pfam:Cadherin_tail
|
807 |
930 |
8.1e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000044851
|
| SMART Domains |
Protein: ENSMUSP00000036359
Gene: ENSMUSG00000102428
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
12 |
23 |
N/A |
INTRINSIC |
|
CA
|
45 |
131 |
3.28e-1 |
SMART |
|
CA
|
155 |
240 |
1.8e-17 |
SMART |
|
CA
|
264 |
345 |
9.22e-24 |
SMART |
|
CA
|
369 |
450 |
1.28e-22 |
SMART |
|
CA
|
474 |
560 |
1.09e-25 |
SMART |
|
CA
|
591 |
669 |
9.24e-15 |
SMART |
|
Pfam:Cadherin_C_2
|
688 |
772 |
3.6e-25 |
PFAM |
|
Pfam:Cadherin_tail
|
809 |
932 |
8.1e-38 |
PFAM |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000055935
AA Change: S582A
PolyPhen 2
Score 0.823 (Sensitivity: 0.84; Specificity: 0.93)
|
| SMART Domains |
Protein: ENSMUSP00000060949
Gene: ENSMUSG00000102543
AA Change: S582A
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
54 |
131 |
3.02e-2 |
SMART |
|
CA
|
155 |
240 |
6.84e-18 |
SMART |
|
CA
|
264 |
348 |
7.91e-23 |
SMART |
|
CA
|
372 |
452 |
4.4e-21 |
SMART |
|
CA
|
476 |
562 |
3.31e-25 |
SMART |
|
CA
|
592 |
674 |
5.69e-15 |
SMART |
|
Pfam:Cadherin_C_2
|
689 |
791 |
1.1e-18 |
PFAM |
|
low complexity region
|
808 |
819 |
N/A |
INTRINSIC |
|
Pfam:Cadherin_tail
|
821 |
944 |
8.3e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000061279
|
| SMART Domains |
Protein: ENSMUSP00000058362
Gene: ENSMUSG00000102742
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
45 |
131 |
3.23e-2 |
SMART |
|
CA
|
155 |
240 |
2.22e-17 |
SMART |
|
CA
|
264 |
345 |
3.36e-26 |
SMART |
|
CA
|
369 |
450 |
7.09e-25 |
SMART |
|
CA
|
474 |
560 |
3.55e-25 |
SMART |
|
CA
|
591 |
669 |
2.53e-12 |
SMART |
|
transmembrane domain
|
692 |
714 |
N/A |
INTRINSIC |
|
low complexity region
|
914 |
933 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000066140
|
| SMART Domains |
Protein: ENSMUSP00000068846
Gene: ENSMUSG00000023036
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
52 |
134 |
4.39e-1 |
SMART |
|
CA
|
158 |
243 |
1.25e-20 |
SMART |
|
CA
|
267 |
351 |
5.09e-26 |
SMART |
|
CA
|
375 |
456 |
1.26e-21 |
SMART |
|
CA
|
480 |
566 |
6.56e-29 |
SMART |
|
CA
|
596 |
674 |
6.95e-10 |
SMART |
|
transmembrane domain
|
693 |
715 |
N/A |
INTRINSIC |
|
low complexity region
|
922 |
941 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000066149
|
| SMART Domains |
Protein: ENSMUSP00000067728
Gene: ENSMUSG00000103897
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
29 |
N/A |
INTRINSIC |
|
CA
|
31 |
131 |
4.84e-2 |
SMART |
|
CA
|
155 |
240 |
1.48e-22 |
SMART |
|
CA
|
264 |
345 |
1.14e-23 |
SMART |
|
CA
|
369 |
450 |
9.44e-21 |
SMART |
|
CA
|
474 |
560 |
1.03e-26 |
SMART |
|
CA
|
591 |
669 |
3.64e-13 |
SMART |
|
Pfam:Cadherin_C_2
|
688 |
772 |
3e-25 |
PFAM |
|
Pfam:Cadherin_tail
|
809 |
932 |
8.1e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000073447
|
| SMART Domains |
Protein: ENSMUSP00000073150
Gene: ENSMUSG00000104346
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
|
CA
|
42 |
128 |
2.15e-2 |
SMART |
|
CA
|
152 |
237 |
4.8e-13 |
SMART |
|
CA
|
261 |
342 |
9.36e-25 |
SMART |
|
CA
|
366 |
447 |
6.62e-25 |
SMART |
|
CA
|
471 |
557 |
6.72e-26 |
SMART |
|
CA
|
588 |
666 |
2.15e-15 |
SMART |
|
Pfam:Cadherin_C_2
|
685 |
768 |
4.8e-24 |
PFAM |
|
Pfam:Cadherin_tail
|
805 |
928 |
8.1e-38 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000192984
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000192875
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000192109
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000192861
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000193222
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193414
|
| SMART Domains |
Protein: ENSMUSP00000141893
Gene: ENSMUSG00000103567
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
45 |
131 |
2.45e-1 |
SMART |
|
CA
|
155 |
240 |
1.05e-18 |
SMART |
|
CA
|
264 |
345 |
6.52e-24 |
SMART |
|
CA
|
369 |
450 |
5.99e-23 |
SMART |
|
CA
|
474 |
560 |
6.99e-24 |
SMART |
|
CA
|
591 |
669 |
5.31e-15 |
SMART |
|
transmembrane domain
|
692 |
714 |
N/A |
INTRINSIC |
|
low complexity region
|
913 |
932 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000076807
|
| SMART Domains |
Protein: ENSMUSP00000076085
Gene: ENSMUSG00000102918
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
20 |
26 |
N/A |
INTRINSIC |
|
CA
|
51 |
133 |
8.56e-3 |
SMART |
|
CA
|
157 |
242 |
1.78e-16 |
SMART |
|
CA
|
266 |
350 |
2.18e-25 |
SMART |
|
CA
|
374 |
455 |
7.09e-25 |
SMART |
|
CA
|
479 |
565 |
1.87e-24 |
SMART |
|
CA
|
593 |
674 |
1.79e-12 |
SMART |
|
Pfam:Cadherin_C_2
|
689 |
774 |
3.9e-14 |
PFAM |
|
Pfam:Cadherin_tail
|
811 |
934 |
8.2e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000192535
|
| SMART Domains |
Protein: ENSMUSP00000142010
Gene: ENSMUSG00000103749
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
17 |
25 |
N/A |
INTRINSIC |
|
CA
|
56 |
131 |
8e-3 |
SMART |
|
CA
|
155 |
240 |
2.49e-20 |
SMART |
|
CA
|
264 |
341 |
4.97e-29 |
SMART |
|
CA
|
365 |
446 |
1.09e-25 |
SMART |
|
CA
|
470 |
556 |
1.75e-24 |
SMART |
|
CA
|
587 |
668 |
9.18e-10 |
SMART |
|
transmembrane domain
|
687 |
709 |
N/A |
INTRINSIC |
|
low complexity region
|
907 |
926 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000192931
|
| SMART Domains |
Protein: ENSMUSP00000141348
Gene: ENSMUSG00000103037
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
36 |
119 |
8e-3 |
SMART |
|
CA
|
143 |
228 |
1.34e-20 |
SMART |
|
CA
|
252 |
333 |
1.52e-24 |
SMART |
|
CA
|
357 |
438 |
9.22e-24 |
SMART |
|
CA
|
462 |
548 |
1.24e-24 |
SMART |
|
CA
|
579 |
660 |
1.3e-9 |
SMART |
|
transmembrane domain
|
679 |
701 |
N/A |
INTRINSIC |
|
low complexity region
|
899 |
918 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193404
|
| SMART Domains |
Protein: ENSMUSP00000141359
Gene: ENSMUSG00000102222
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
43 |
129 |
2.76e-2 |
SMART |
|
CA
|
153 |
238 |
1.16e-20 |
SMART |
|
CA
|
262 |
343 |
1.25e-25 |
SMART |
|
CA
|
367 |
448 |
4.75e-26 |
SMART |
|
CA
|
472 |
558 |
3.69e-23 |
SMART |
|
CA
|
589 |
667 |
3.84e-12 |
SMART |
|
transmembrane domain
|
690 |
712 |
N/A |
INTRINSIC |
|
low complexity region
|
911 |
930 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000192511
|
| SMART Domains |
Protein: ENSMUSP00000141704
Gene: ENSMUSG00000103472
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
47 |
133 |
1.57e-2 |
SMART |
|
CA
|
157 |
242 |
3.24e-19 |
SMART |
|
CA
|
266 |
347 |
3.21e-23 |
SMART |
|
CA
|
371 |
452 |
9.08e-23 |
SMART |
|
CA
|
476 |
562 |
1.32e-24 |
SMART |
|
CA
|
593 |
671 |
3.5e-15 |
SMART |
|
transmembrane domain
|
694 |
716 |
N/A |
INTRINSIC |
|
low complexity region
|
916 |
935 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000091935
|
| SMART Domains |
Protein: ENSMUSP00000089555
Gene: ENSMUSG00000102440
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
29 |
N/A |
INTRINSIC |
|
CA
|
32 |
132 |
8.37e-3 |
SMART |
|
CA
|
156 |
241 |
5.51e-22 |
SMART |
|
CA
|
265 |
346 |
8.27e-26 |
SMART |
|
CA
|
370 |
451 |
1.4e-23 |
SMART |
|
CA
|
475 |
561 |
2.97e-27 |
SMART |
|
CA
|
592 |
670 |
1.18e-12 |
SMART |
|
Pfam:Cadherin_C_2
|
688 |
772 |
3.9e-24 |
PFAM |
|
Pfam:Cadherin_tail
|
809 |
932 |
8.1e-38 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000192103
|
| SMART Domains |
Protein: ENSMUSP00000141611
Gene: ENSMUSG00000102918
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
29 |
N/A |
INTRINSIC |
|
Pfam:Cadherin_2
|
31 |
78 |
2.3e-13 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000115661
|
| SMART Domains |
Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
20 |
131 |
5.3e-2 |
SMART |
|
CA
|
155 |
240 |
1.51e-19 |
SMART |
|
CA
|
264 |
348 |
7.6e-25 |
SMART |
|
CA
|
372 |
453 |
1.42e-24 |
SMART |
|
CA
|
477 |
563 |
1.42e-24 |
SMART |
|
CA
|
594 |
674 |
4.12e-12 |
SMART |
|
low complexity region
|
706 |
721 |
N/A |
INTRINSIC |
|
Pfam:Cadherin_tail
|
796 |
930 |
3.9e-58 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000194980
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000208907
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000194068
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194190
|
| SMART Domains |
Protein: ENSMUSP00000142062
Gene: ENSMUSG00000103144
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
|
CA
|
31 |
131 |
3.16e-2 |
SMART |
|
CA
|
155 |
240 |
5.39e-16 |
SMART |
|
CA
|
264 |
345 |
6.72e-26 |
SMART |
|
CA
|
369 |
450 |
1.32e-24 |
SMART |
|
CA
|
474 |
560 |
4.17e-22 |
SMART |
|
CA
|
591 |
669 |
4.48e-13 |
SMART |
|
transmembrane domain
|
692 |
714 |
N/A |
INTRINSIC |
|
low complexity region
|
912 |
931 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194928
|
| SMART Domains |
Protein: ENSMUSP00000141997
Gene: ENSMUSG00000104063
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
47 |
131 |
2.48e-6 |
SMART |
|
CA
|
155 |
240 |
1.57e-17 |
SMART |
|
CA
|
264 |
343 |
1.29e-27 |
SMART |
|
CA
|
367 |
448 |
9.14e-28 |
SMART |
|
CA
|
472 |
558 |
1.24e-24 |
SMART |
|
CA
|
589 |
670 |
3.73e-10 |
SMART |
|
transmembrane domain
|
689 |
711 |
N/A |
INTRINSIC |
|
low complexity region
|
716 |
721 |
N/A |
INTRINSIC |
|
low complexity region
|
910 |
929 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000195823
|
| SMART Domains |
Protein: ENSMUSP00000141803
Gene: ENSMUSG00000103793
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
13 |
24 |
N/A |
INTRINSIC |
|
CA
|
45 |
131 |
2.41e-2 |
SMART |
|
CA
|
155 |
240 |
5.77e-16 |
SMART |
|
CA
|
264 |
345 |
1.1e-21 |
SMART |
|
CA
|
369 |
450 |
2.75e-22 |
SMART |
|
low complexity region
|
453 |
462 |
N/A |
INTRINSIC |
|
CA
|
474 |
560 |
9.22e-24 |
SMART |
|
CA
|
591 |
669 |
2.4e-13 |
SMART |
|
transmembrane domain
|
692 |
714 |
N/A |
INTRINSIC |
|
low complexity region
|
913 |
932 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193984
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193869
|
| SMART Domains |
Protein: ENSMUSP00000141482
Gene: ENSMUSG00000103332
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
28 |
N/A |
INTRINSIC |
|
CA
|
45 |
131 |
1.64e-2 |
SMART |
|
CA
|
155 |
240 |
6.42e-23 |
SMART |
|
CA
|
264 |
345 |
1.76e-20 |
SMART |
|
CA
|
369 |
450 |
2.27e-23 |
SMART |
|
CA
|
474 |
560 |
1.5e-23 |
SMART |
|
CA
|
591 |
669 |
1.17e-16 |
SMART |
|
transmembrane domain
|
692 |
714 |
N/A |
INTRINSIC |
|
low complexity region
|
912 |
931 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194418
|
| SMART Domains |
Protein: ENSMUSP00000142140
Gene: ENSMUSG00000103677
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
44 |
130 |
1.64e-2 |
SMART |
|
CA
|
154 |
239 |
3.93e-18 |
SMART |
|
CA
|
263 |
344 |
5.22e-23 |
SMART |
|
CA
|
368 |
449 |
5.02e-25 |
SMART |
|
CA
|
473 |
559 |
2.07e-26 |
SMART |
|
CA
|
590 |
668 |
6.84e-18 |
SMART |
|
transmembrane domain
|
690 |
712 |
N/A |
INTRINSIC |
|
low complexity region
|
911 |
930 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000195363
|
| SMART Domains |
Protein: ENSMUSP00000142227
Gene: ENSMUSG00000103585
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
17 |
25 |
N/A |
INTRINSIC |
|
CA
|
56 |
131 |
1.47e-2 |
SMART |
|
CA
|
155 |
240 |
1.23e-19 |
SMART |
|
CA
|
264 |
343 |
5.54e-27 |
SMART |
|
CA
|
367 |
448 |
5.09e-26 |
SMART |
|
CA
|
472 |
558 |
1.98e-23 |
SMART |
|
CA
|
589 |
670 |
1.3e-9 |
SMART |
|
transmembrane domain
|
689 |
711 |
N/A |
INTRINSIC |
|
low complexity region
|
893 |
912 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000195239
|
| SMART Domains |
Protein: ENSMUSP00000141244
Gene: ENSMUSG00000023036
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
112 |
131 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193890
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000193941
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000194544
|
| SMART Domains |
Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:CA
|
18 |
66 |
5e-20 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000195764
|
| SMART Domains |
Protein: ENSMUSP00000142272
Gene: ENSMUSG00000103081
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
29 |
N/A |
INTRINSIC |
|
CA
|
57 |
132 |
1.5e-4 |
SMART |
|
CA
|
156 |
241 |
1.2e-20 |
SMART |
|
CA
|
265 |
346 |
7.8e-29 |
SMART |
|
CA
|
370 |
451 |
1.7e-26 |
SMART |
|
CA
|
475 |
561 |
2.2e-26 |
SMART |
|
CA
|
592 |
673 |
6.4e-12 |
SMART |
|
transmembrane domain
|
692 |
714 |
N/A |
INTRINSIC |
|
low complexity region
|
911 |
930 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000195112
|
| SMART Domains |
Protein: ENSMUSP00000141449
Gene: ENSMUSG00000102748
| Domain | Start | End | E-Value | Type |
|---|
|
CA
|
24 |
130 |
8.18e-3 |
SMART |
|
CA
|
154 |
239 |
1.39e-18 |
SMART |
|
CA
|
263 |
344 |
7.91e-23 |
SMART |
|
CA
|
368 |
449 |
2.27e-23 |
SMART |
|
CA
|
473 |
559 |
1.24e-24 |
SMART |
|
CA
|
590 |
671 |
1.3e-9 |
SMART |
|
transmembrane domain
|
690 |
712 |
N/A |
INTRINSIC |
|
low complexity region
|
909 |
928 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 97.3%
- 3x: 96.8%
- 10x: 95.3%
- 20x: 92.8%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the protocadherin gamma gene cluster, one of three related clusters tandemly linked on chromosome five. These gene clusters have an immunoglobulin-like organization, suggesting that a novel mechanism may be involved in their regulation and expression. The gamma gene cluster includes 22 genes divided into 3 subfamilies. Subfamily A contains 12 genes, subfamily B contains 7 genes and 2 pseudogenes, and the more distantly related subfamily C contains 3 genes. The tandem array of 22 large, variable region exons are followed by a constant region, containing 3 exons shared by all genes in the cluster. Each variable region exon encodes the extracellular region, which includes 6 cadherin ectodomains and a transmembrane region. The constant region exons encode the common cytoplasmic region. These neural cadherin-like cell adhesion proteins most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been described for the gamma cluster genes. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 102 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 9130230L23Rik |
A |
T |
5: 66,157,560 (GRCm39) |
M1K |
probably null |
Het |
| Abca4 |
T |
A |
3: 121,899,010 (GRCm39) |
I664N |
probably damaging |
Het |
| Acin1 |
T |
C |
14: 54,881,718 (GRCm39) |
D335G |
probably damaging |
Het |
| Acoxl |
A |
G |
2: 127,719,707 (GRCm39) |
Y156C |
probably damaging |
Het |
| Adamts20 |
A |
G |
15: 94,236,340 (GRCm39) |
F844L |
probably benign |
Het |
| Ago1 |
A |
G |
4: 126,335,029 (GRCm39) |
Y398H |
probably damaging |
Het |
| Aldob |
A |
G |
4: 49,543,835 (GRCm39) |
V49A |
possibly damaging |
Het |
| Arhgap18 |
A |
G |
10: 26,722,026 (GRCm39) |
E71G |
probably damaging |
Het |
| Asb12 |
G |
T |
X: 94,513,950 (GRCm39) |
H307N |
probably damaging |
Het |
| Atp2b1 |
T |
C |
10: 98,832,750 (GRCm39) |
V417A |
probably damaging |
Het |
| AY358078 |
T |
C |
14: 52,037,504 (GRCm39) |
M1T |
probably null |
Het |
| Bcl2l15 |
A |
G |
3: 103,745,914 (GRCm39) |
|
probably null |
Het |
| Brpf3 |
A |
G |
17: 29,026,342 (GRCm39) |
M472V |
probably benign |
Het |
| Bsn |
A |
G |
9: 107,983,918 (GRCm39) |
S3379P |
unknown |
Het |
| Cap2 |
T |
C |
13: 46,793,555 (GRCm39) |
V333A |
probably damaging |
Het |
| Cd207 |
T |
A |
6: 83,652,635 (GRCm39) |
D165V |
probably damaging |
Het |
| Cfap210 |
A |
T |
2: 69,612,181 (GRCm39) |
|
probably null |
Het |
| Cmtr1 |
A |
G |
17: 29,893,148 (GRCm39) |
T496A |
probably benign |
Het |
| Col14a1 |
T |
A |
15: 55,310,858 (GRCm39) |
|
probably benign |
Het |
| Cstb |
A |
G |
10: 78,263,273 (GRCm39) |
*99W |
probably null |
Het |
| Cstdc6 |
T |
G |
16: 36,142,148 (GRCm39) |
D76A |
possibly damaging |
Het |
| Ddx11 |
G |
A |
17: 66,442,934 (GRCm39) |
|
probably null |
Het |
| Dip2c |
T |
C |
13: 9,671,985 (GRCm39) |
M990T |
possibly damaging |
Het |
| Epc2 |
A |
G |
2: 49,422,117 (GRCm39) |
Y337C |
probably damaging |
Het |
| Fmn1 |
A |
G |
2: 113,539,783 (GRCm39) |
E1326G |
probably damaging |
Het |
| Focad |
A |
T |
4: 88,096,326 (GRCm39) |
D236V |
probably damaging |
Het |
| Fsd1 |
G |
A |
17: 56,298,254 (GRCm39) |
S193N |
probably benign |
Het |
| Gm4922 |
T |
A |
10: 18,660,211 (GRCm39) |
R170S |
possibly damaging |
Het |
| Gm5129 |
T |
C |
5: 29,940,654 (GRCm39) |
|
probably benign |
Het |
| Gucy2d |
T |
A |
7: 98,103,268 (GRCm39) |
L504H |
probably damaging |
Het |
| Hspbap1 |
A |
T |
16: 35,621,934 (GRCm39) |
Y93F |
possibly damaging |
Het |
| Iars2 |
A |
T |
1: 185,050,765 (GRCm39) |
D441E |
probably benign |
Het |
| Il1rap |
A |
T |
16: 26,541,676 (GRCm39) |
H639L |
probably damaging |
Het |
| Inhbc |
A |
T |
10: 127,193,416 (GRCm39) |
V200E |
probably benign |
Het |
| Ints8 |
C |
A |
4: 11,241,684 (GRCm39) |
C253F |
probably damaging |
Het |
| Intu |
G |
T |
3: 40,618,765 (GRCm39) |
G257V |
probably damaging |
Het |
| Kif23 |
C |
A |
9: 61,826,243 (GRCm39) |
A929S |
possibly damaging |
Het |
| Kmt2b |
A |
T |
7: 30,274,083 (GRCm39) |
V2207E |
possibly damaging |
Het |
| Ksr2 |
A |
C |
5: 117,643,594 (GRCm39) |
E121A |
probably benign |
Het |
| Lce1b |
A |
G |
3: 92,563,318 (GRCm39) |
S72P |
unknown |
Het |
| Lpl |
TGG |
TG |
8: 69,349,254 (GRCm39) |
|
probably null |
Het |
| Mcmdc2 |
T |
C |
1: 10,001,030 (GRCm39) |
V435A |
probably damaging |
Het |
| Mecom |
A |
G |
3: 30,563,577 (GRCm39) |
|
probably null |
Het |
| Mier2 |
A |
G |
10: 79,384,664 (GRCm39) |
V150A |
probably damaging |
Het |
| Mmp16 |
A |
T |
4: 18,116,013 (GRCm39) |
D539V |
probably benign |
Het |
| Mpp1 |
A |
G |
X: 74,168,975 (GRCm39) |
|
probably null |
Het |
| Mpp2 |
C |
T |
11: 101,955,493 (GRCm39) |
E86K |
probably benign |
Het |
| Mtor |
T |
A |
4: 148,539,089 (GRCm39) |
F195L |
probably damaging |
Het |
| Myo3a |
T |
C |
2: 22,404,657 (GRCm39) |
I663T |
probably benign |
Het |
| Nlrp5 |
G |
A |
7: 23,123,407 (GRCm39) |
G756E |
possibly damaging |
Het |
| Nudt18 |
T |
C |
14: 70,817,335 (GRCm39) |
L255P |
probably damaging |
Het |
| Nup62 |
T |
A |
7: 44,478,472 (GRCm39) |
S162R |
possibly damaging |
Het |
| Oosp2 |
C |
T |
19: 11,626,959 (GRCm39) |
|
probably null |
Het |
| Or52n20 |
T |
A |
7: 104,320,524 (GRCm39) |
I205N |
possibly damaging |
Het |
| Or6c66 |
A |
T |
10: 129,461,621 (GRCm39) |
I103K |
probably damaging |
Het |
| Or7g20 |
G |
A |
9: 18,946,562 (GRCm39) |
A48T |
probably benign |
Het |
| Or8h7 |
A |
G |
2: 86,720,956 (GRCm39) |
S188P |
probably damaging |
Het |
| Pan2 |
A |
G |
10: 128,149,050 (GRCm39) |
D506G |
probably damaging |
Het |
| Pcdh9 |
G |
A |
14: 94,125,471 (GRCm39) |
S233L |
probably damaging |
Het |
| Pdik1l |
T |
C |
4: 134,006,222 (GRCm39) |
D70G |
probably damaging |
Het |
| Peg12 |
T |
C |
7: 62,113,416 (GRCm39) |
H227R |
probably benign |
Het |
| Pms1 |
C |
T |
1: 53,228,546 (GRCm39) |
V901I |
probably benign |
Het |
| Pnisr |
C |
T |
4: 21,874,086 (GRCm39) |
|
probably benign |
Het |
| Pole |
A |
G |
5: 110,482,063 (GRCm39) |
E135G |
probably benign |
Het |
| Ppp6r2 |
C |
A |
15: 89,166,141 (GRCm39) |
A715E |
probably benign |
Het |
| Prickle4 |
T |
G |
17: 48,001,044 (GRCm39) |
H174P |
possibly damaging |
Het |
| Prl2a1 |
T |
C |
13: 27,988,923 (GRCm39) |
L16P |
probably damaging |
Het |
| Prss32 |
C |
T |
17: 24,072,868 (GRCm39) |
T33M |
probably benign |
Het |
| Psmd13 |
C |
T |
7: 140,463,430 (GRCm39) |
T38I |
probably damaging |
Het |
| Rai14 |
C |
A |
15: 10,633,314 (GRCm39) |
Q25H |
probably damaging |
Het |
| Rbbp6 |
T |
C |
7: 122,596,252 (GRCm39) |
V598A |
probably damaging |
Het |
| Rbm34 |
C |
A |
8: 127,697,631 (GRCm39) |
A27S |
probably benign |
Het |
| Rbm4b |
A |
G |
19: 4,812,331 (GRCm39) |
T247A |
probably benign |
Het |
| Riiad1 |
G |
A |
3: 94,380,176 (GRCm39) |
P40S |
possibly damaging |
Het |
| Sema4f |
T |
C |
6: 82,894,824 (GRCm39) |
D457G |
possibly damaging |
Het |
| Sema6c |
A |
T |
3: 95,078,099 (GRCm39) |
I492F |
probably damaging |
Het |
| Serpina3a |
A |
T |
12: 104,084,886 (GRCm39) |
I94L |
probably benign |
Het |
| Skida1 |
TTGCTGCTGCTGCTGCTGCTGCTGCTG |
TTGCTGCTGCTGCTGCTGCTGCTG |
2: 18,051,155 (GRCm39) |
|
probably benign |
Het |
| Slc38a1 |
G |
A |
15: 96,485,016 (GRCm39) |
T221M |
probably damaging |
Het |
| Slc6a17 |
T |
A |
3: 107,379,492 (GRCm39) |
M559L |
probably damaging |
Het |
| Sntg2 |
T |
C |
12: 30,286,650 (GRCm39) |
N315D |
probably benign |
Het |
| Snx10 |
T |
A |
6: 51,552,890 (GRCm39) |
V11E |
probably damaging |
Het |
| Spta1 |
A |
G |
1: 174,047,405 (GRCm39) |
E1683G |
probably benign |
Het |
| Ssc5d |
A |
T |
7: 4,931,506 (GRCm39) |
R238W |
probably damaging |
Het |
| Ssh1 |
A |
T |
5: 114,081,512 (GRCm39) |
F617L |
probably damaging |
Het |
| Taf1 |
T |
G |
X: 100,606,563 (GRCm39) |
M1254R |
probably damaging |
Het |
| Tcirg1 |
A |
G |
19: 3,948,835 (GRCm39) |
L450P |
probably damaging |
Het |
| Ticam1 |
C |
A |
17: 56,578,718 (GRCm39) |
A126S |
probably benign |
Het |
| Tnxb |
T |
A |
17: 34,890,821 (GRCm39) |
V388E |
probably damaging |
Het |
| Tomm5 |
A |
G |
4: 45,107,939 (GRCm39) |
L32P |
probably damaging |
Het |
| Ubr5 |
A |
T |
15: 38,042,090 (GRCm39) |
S169T |
probably benign |
Het |
| Usp28 |
T |
G |
9: 48,920,494 (GRCm39) |
D240E |
probably benign |
Het |
| Usp34 |
T |
C |
11: 23,311,593 (GRCm39) |
Y462H |
possibly damaging |
Het |
| Utp14b |
C |
A |
1: 78,643,148 (GRCm39) |
Q349K |
probably damaging |
Het |
| Utp20 |
G |
T |
10: 88,585,305 (GRCm39) |
D2586E |
probably benign |
Het |
| Vmn1r173 |
A |
G |
7: 23,402,660 (GRCm39) |
I298M |
unknown |
Het |
| Vmn1r37 |
T |
A |
6: 66,708,461 (GRCm39) |
I29K |
probably benign |
Het |
| Vmn2r23 |
G |
A |
6: 123,679,874 (GRCm39) |
G32D |
probably damaging |
Het |
| Xpo7 |
A |
T |
14: 70,931,431 (GRCm39) |
F296I |
probably damaging |
Het |
| Zfhx4 |
A |
G |
3: 5,477,774 (GRCm39) |
E3463G |
probably damaging |
Het |
| Zfp455 |
G |
T |
13: 67,355,509 (GRCm39) |
R194L |
probably benign |
Het |
| Zfp663 |
T |
C |
2: 165,194,651 (GRCm39) |
T523A |
possibly damaging |
Het |
|
| Other mutations in Pcdhgc5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01685:Pcdhgc5
|
APN |
18 |
37,954,808 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02588:Pcdhgc5
|
APN |
18 |
37,955,003 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03008:Pcdhgc5
|
APN |
18 |
37,954,887 (GRCm39) |
missense |
probably benign |
|
|
IGL03123:Pcdhgc5
|
APN |
18 |
37,952,966 (GRCm39) |
missense |
probably benign |
|
|
IGL03235:Pcdhgc5
|
APN |
18 |
37,953,151 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4495001:Pcdhgc5
|
UTSW |
18 |
37,954,030 (GRCm39) |
missense |
possibly damaging |
0.49 |
|
R0265:Pcdhgc5
|
UTSW |
18 |
37,954,403 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0630:Pcdhgc5
|
UTSW |
18 |
37,954,931 (GRCm39) |
missense |
probably benign |
0.04 |
|
R1765:Pcdhgc5
|
UTSW |
18 |
37,954,913 (GRCm39) |
missense |
probably benign |
|
|
R1939:Pcdhgc5
|
UTSW |
18 |
37,955,003 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2136:Pcdhgc5
|
UTSW |
18 |
37,953,166 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R3104:Pcdhgc5
|
UTSW |
18 |
37,954,727 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R3606:Pcdhgc5
|
UTSW |
18 |
37,953,560 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4765:Pcdhgc5
|
UTSW |
18 |
37,955,122 (GRCm39) |
missense |
probably benign |
0.21 |
|
R5789:Pcdhgc5
|
UTSW |
18 |
37,954,559 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5864:Pcdhgc5
|
UTSW |
18 |
37,954,814 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5995:Pcdhgc5
|
UTSW |
18 |
37,954,113 (GRCm39) |
nonsense |
probably null |
|
|
R6252:Pcdhgc5
|
UTSW |
18 |
37,954,583 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6285:Pcdhgc5
|
UTSW |
18 |
37,953,674 (GRCm39) |
missense |
probably benign |
0.03 |
|
R6455:Pcdhgc5
|
UTSW |
18 |
37,954,301 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6569:Pcdhgc5
|
UTSW |
18 |
37,953,248 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6953:Pcdhgc5
|
UTSW |
18 |
37,953,514 (GRCm39) |
missense |
possibly damaging |
0.78 |
|
R8025:Pcdhgc5
|
UTSW |
18 |
37,953,992 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R8159:Pcdhgc5
|
UTSW |
18 |
37,954,175 (GRCm39) |
missense |
probably benign |
0.15 |
|
R8161:Pcdhgc5
|
UTSW |
18 |
37,954,615 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8498:Pcdhgc5
|
UTSW |
18 |
37,953,487 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8507:Pcdhgc5
|
UTSW |
18 |
37,952,945 (GRCm39) |
missense |
probably benign |
0.26 |
|
R9138:Pcdhgc5
|
UTSW |
18 |
37,953,892 (GRCm39) |
missense |
probably benign |
0.05 |
|
X0022:Pcdhgc5
|
UTSW |
18 |
37,954,207 (GRCm39) |
missense |
probably benign |
0.06 |
|
| Predicted Primers |
PCR Primer
(F):5'- TTGTGTATGTCAACCCCGAGG -3'
(R):5'- AGAGTCATCCTCCAATAAGGCC -3'
Sequencing Primer
(F):5'- ATGGACGAATCTTTGCCCAG -3'
(R):5'- AATAAGGCCCGGGCTGTG -3'
|
| Posted On |
2014-06-30 |
Incidental Mutation