Incidental Mutation 'R1881:Dsg1c'
| ID |
209153 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dsg1c
|
| Ensembl Gene |
ENSMUSG00000034774 |
| Gene Name |
desmoglein 1 gamma |
| Synonyms |
Dsg6 |
| MMRRC Submission |
039902-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R1881 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
18 |
| Chromosomal Location |
20380397-20418088 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to A
at 20405597 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000054799
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000054128]
|
| AlphaFold |
Q7TSF0 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000054128
|
| SMART Domains |
Protein: ENSMUSP00000054799
Gene: ENSMUSG00000034774
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
23 |
N/A |
INTRINSIC |
|
CA
|
70 |
155 |
1.7e-16 |
SMART |
|
CA
|
179 |
267 |
5.2e-24 |
SMART |
|
CA
|
290 |
384 |
4.5e-8 |
SMART |
|
Blast:CA
|
407 |
488 |
8e-28 |
BLAST |
|
low complexity region
|
491 |
500 |
N/A |
INTRINSIC |
|
low complexity region
|
528 |
539 |
N/A |
INTRINSIC |
|
low complexity region
|
545 |
553 |
N/A |
INTRINSIC |
|
Pfam:Cadherin_C
|
611 |
732 |
5.2e-8 |
PFAM |
|
low complexity region
|
737 |
750 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 97.3%
- 3x: 96.7%
- 10x: 95.1%
- 20x: 92.3%
|
| Validation Efficiency |
96% (71/74) |
| MGI Phenotype |
FUNCTION: This gene encodes a member of the cadherin family of proteins that forms an integral transmembrane component of desmosomes, the multiprotein complexes involved in cell adhesion, organization of the cytoskeleton, cell sorting and cell signaling. The encoded preproprotein undergoes proteolytic processing to generate a mature, functional protein. This gene is located in a cluster of desmosomal cadherin genes on chromosome 18. [provided by RefSeq, Jan 2016]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 66 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acaca |
C |
A |
11: 84,161,213 (GRCm39) |
Y1026* |
probably null |
Het |
| Acaca |
T |
G |
11: 84,191,297 (GRCm39) |
|
probably benign |
Het |
| Adcy8 |
C |
T |
15: 64,678,503 (GRCm39) |
M483I |
probably damaging |
Het |
| Adgrb2 |
G |
A |
4: 129,904,078 (GRCm39) |
G735S |
probably damaging |
Het |
| Akap9 |
A |
G |
5: 4,100,173 (GRCm39) |
T2612A |
probably benign |
Het |
| Armc1 |
A |
T |
3: 19,189,060 (GRCm39) |
S202T |
possibly damaging |
Het |
| Arsj |
T |
C |
3: 126,232,486 (GRCm39) |
S411P |
probably damaging |
Het |
| Ash1l |
T |
C |
3: 88,888,862 (GRCm39) |
V247A |
probably benign |
Het |
| Camta2 |
T |
C |
11: 70,562,842 (GRCm39) |
D935G |
probably benign |
Het |
| Cc2d2a |
G |
T |
5: 43,898,170 (GRCm39) |
V1626F |
probably damaging |
Het |
| Cpne3 |
T |
A |
4: 19,535,266 (GRCm39) |
R255S |
probably benign |
Het |
| Cramp1 |
A |
G |
17: 25,196,656 (GRCm39) |
|
probably benign |
Het |
| Csf2rb2 |
C |
T |
15: 78,176,735 (GRCm39) |
|
probably null |
Het |
| Cstf3 |
A |
T |
2: 104,484,563 (GRCm39) |
M396L |
probably benign |
Het |
| Ctnnd2 |
A |
G |
15: 31,005,227 (GRCm39) |
|
probably benign |
Het |
| Cul7 |
A |
T |
17: 46,962,888 (GRCm39) |
Y173F |
probably damaging |
Het |
| Dach1 |
A |
T |
14: 98,138,832 (GRCm39) |
M537K |
probably benign |
Het |
| Ddhd2 |
T |
C |
8: 26,217,727 (GRCm39) |
I717V |
probably damaging |
Het |
| Dnm1 |
C |
T |
2: 32,213,742 (GRCm39) |
V475I |
probably damaging |
Het |
| Dnm3 |
C |
T |
1: 162,305,517 (GRCm39) |
|
probably benign |
Het |
| Eaf2 |
A |
T |
16: 36,620,941 (GRCm39) |
|
probably benign |
Het |
| En1 |
T |
A |
1: 120,530,904 (GRCm39) |
V48E |
unknown |
Het |
| Eral1 |
T |
A |
11: 77,966,875 (GRCm39) |
H180L |
possibly damaging |
Het |
| Fry |
T |
A |
5: 150,401,511 (GRCm39) |
C2760S |
probably damaging |
Het |
| Gtf2h3 |
C |
T |
5: 124,722,336 (GRCm39) |
A113V |
probably benign |
Het |
| Hmcn1 |
C |
T |
1: 150,514,651 (GRCm39) |
V3574M |
probably benign |
Het |
| Ifnl2 |
T |
A |
7: 28,209,112 (GRCm39) |
R68W |
probably damaging |
Het |
| Il6st |
A |
G |
13: 112,640,947 (GRCm39) |
T908A |
probably damaging |
Het |
| Krtap4-1 |
C |
T |
11: 99,518,990 (GRCm39) |
G7S |
probably null |
Het |
| Ly75 |
T |
C |
2: 60,180,284 (GRCm39) |
E631G |
probably benign |
Het |
| Mup5 |
C |
A |
4: 61,752,868 (GRCm39) |
E52* |
probably null |
Het |
| Myh15 |
A |
G |
16: 48,891,446 (GRCm39) |
I189V |
probably damaging |
Het |
| Nav3 |
T |
A |
10: 109,688,420 (GRCm39) |
Q619L |
probably damaging |
Het |
| Or14a257 |
T |
C |
7: 86,138,646 (GRCm39) |
M38V |
probably benign |
Het |
| Or1p1 |
A |
T |
11: 74,179,492 (GRCm39) |
T7S |
probably benign |
Het |
| Or4n4b |
A |
G |
14: 50,536,472 (GRCm39) |
I98T |
probably damaging |
Het |
| Or5e1 |
T |
C |
7: 108,354,335 (GRCm39) |
S91P |
probably damaging |
Het |
| Pam |
T |
C |
1: 97,850,876 (GRCm39) |
T161A |
probably benign |
Het |
| Phf8-ps |
T |
A |
17: 33,284,258 (GRCm39) |
D848V |
probably damaging |
Het |
| Pigs |
T |
C |
11: 78,232,582 (GRCm39) |
V472A |
probably benign |
Het |
| Plek |
A |
T |
11: 16,940,111 (GRCm39) |
N176K |
probably benign |
Het |
| Poc5 |
A |
G |
13: 96,535,239 (GRCm39) |
N168S |
probably benign |
Het |
| Pomt2 |
G |
T |
12: 87,182,370 (GRCm39) |
A219D |
probably damaging |
Het |
| Rttn |
T |
A |
18: 89,033,336 (GRCm39) |
S716T |
probably damaging |
Het |
| Sema4b |
A |
T |
7: 79,866,540 (GRCm39) |
S207C |
probably damaging |
Het |
| Slc25a20 |
G |
A |
9: 108,557,408 (GRCm39) |
|
probably null |
Het |
| Slc5a6 |
A |
T |
5: 31,194,155 (GRCm39) |
L634Q |
probably damaging |
Het |
| Slfn3 |
A |
G |
11: 83,104,202 (GRCm39) |
I235V |
possibly damaging |
Het |
| Smarcc1 |
T |
A |
9: 110,004,167 (GRCm39) |
L407Q |
probably damaging |
Het |
| Spata32 |
T |
C |
11: 103,101,561 (GRCm39) |
|
probably benign |
Het |
| Tdrd3 |
A |
G |
14: 87,723,783 (GRCm39) |
|
probably null |
Het |
| Thada |
A |
G |
17: 84,744,130 (GRCm39) |
V726A |
probably benign |
Het |
| Tmed7 |
A |
T |
18: 46,721,622 (GRCm39) |
|
probably null |
Het |
| Tmem161a |
G |
A |
8: 70,633,435 (GRCm39) |
G94S |
probably null |
Het |
| Tmem81 |
T |
A |
1: 132,435,948 (GRCm39) |
|
probably benign |
Het |
| Trim63 |
C |
A |
4: 134,043,702 (GRCm39) |
A55E |
probably damaging |
Het |
| Trmt1 |
A |
C |
8: 85,415,896 (GRCm39) |
|
probably benign |
Het |
| Trpv4 |
C |
T |
5: 114,761,687 (GRCm39) |
V814M |
probably benign |
Het |
| Tshz3 |
T |
C |
7: 36,471,079 (GRCm39) |
S1023P |
possibly damaging |
Het |
| Upk3bl |
G |
A |
5: 136,086,157 (GRCm39) |
R31Q |
probably benign |
Het |
| Usp40 |
T |
C |
1: 87,921,993 (GRCm39) |
D290G |
probably benign |
Het |
| Vmn1r192 |
G |
T |
13: 22,371,764 (GRCm39) |
A152E |
probably benign |
Het |
| Vmn1r26 |
T |
A |
6: 57,985,650 (GRCm39) |
T180S |
probably benign |
Het |
| Wdr48 |
G |
T |
9: 119,738,606 (GRCm39) |
V89L |
probably benign |
Het |
| Wdr6 |
G |
T |
9: 108,450,378 (GRCm39) |
|
probably null |
Het |
| Zfp345 |
A |
G |
2: 150,314,275 (GRCm39) |
Y421H |
probably damaging |
Het |
|
| Other mutations in Dsg1c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00567:Dsg1c
|
APN |
18 |
20,407,733 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00596:Dsg1c
|
APN |
18 |
20,414,899 (GRCm39) |
splice site |
probably benign |
|
|
IGL01412:Dsg1c
|
APN |
18 |
20,380,518 (GRCm39) |
missense |
probably benign |
|
|
IGL02037:Dsg1c
|
APN |
18 |
20,410,007 (GRCm39) |
missense |
probably benign |
0.02 |
|
IGL02247:Dsg1c
|
APN |
18 |
20,397,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02386:Dsg1c
|
APN |
18 |
20,410,056 (GRCm39) |
missense |
probably benign |
|
|
IGL02408:Dsg1c
|
APN |
18 |
20,407,776 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02519:Dsg1c
|
APN |
18 |
20,416,790 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02591:Dsg1c
|
APN |
18 |
20,408,249 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02730:Dsg1c
|
APN |
18 |
20,407,887 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02836:Dsg1c
|
APN |
18 |
20,400,986 (GRCm39) |
missense |
probably benign |
0.07 |
|
IGL03335:Dsg1c
|
APN |
18 |
20,416,754 (GRCm39) |
missense |
probably benign |
0.01 |
|
Nancy
|
UTSW |
18 |
20,416,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0385:Dsg1c
|
UTSW |
18 |
20,416,711 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0561:Dsg1c
|
UTSW |
18 |
20,407,832 (GRCm39) |
missense |
probably benign |
0.04 |
|
R0570:Dsg1c
|
UTSW |
18 |
20,403,435 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0573:Dsg1c
|
UTSW |
18 |
20,412,298 (GRCm39) |
missense |
probably benign |
0.02 |
|
R0621:Dsg1c
|
UTSW |
18 |
20,412,752 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R0632:Dsg1c
|
UTSW |
18 |
20,405,403 (GRCm39) |
splice site |
probably benign |
|
|
R1183:Dsg1c
|
UTSW |
18 |
20,416,255 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1529:Dsg1c
|
UTSW |
18 |
20,415,080 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1596:Dsg1c
|
UTSW |
18 |
20,415,104 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1619:Dsg1c
|
UTSW |
18 |
20,397,899 (GRCm39) |
missense |
probably benign |
0.36 |
|
R1623:Dsg1c
|
UTSW |
18 |
20,408,234 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1844:Dsg1c
|
UTSW |
18 |
20,416,096 (GRCm39) |
splice site |
probably null |
|
|
R2017:Dsg1c
|
UTSW |
18 |
20,399,253 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R2072:Dsg1c
|
UTSW |
18 |
20,408,309 (GRCm39) |
missense |
probably benign |
0.09 |
|
R2319:Dsg1c
|
UTSW |
18 |
20,408,235 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2340:Dsg1c
|
UTSW |
18 |
20,400,945 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3403:Dsg1c
|
UTSW |
18 |
20,403,407 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3407:Dsg1c
|
UTSW |
18 |
20,415,115 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3874:Dsg1c
|
UTSW |
18 |
20,410,109 (GRCm39) |
missense |
probably benign |
0.02 |
|
R3910:Dsg1c
|
UTSW |
18 |
20,399,253 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R4535:Dsg1c
|
UTSW |
18 |
20,408,322 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4739:Dsg1c
|
UTSW |
18 |
20,408,246 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5038:Dsg1c
|
UTSW |
18 |
20,397,901 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5165:Dsg1c
|
UTSW |
18 |
20,410,080 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5210:Dsg1c
|
UTSW |
18 |
20,407,758 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R5253:Dsg1c
|
UTSW |
18 |
20,405,436 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5327:Dsg1c
|
UTSW |
18 |
20,400,994 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R5361:Dsg1c
|
UTSW |
18 |
20,416,703 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R5475:Dsg1c
|
UTSW |
18 |
20,415,088 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5512:Dsg1c
|
UTSW |
18 |
20,405,568 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5681:Dsg1c
|
UTSW |
18 |
20,416,270 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5710:Dsg1c
|
UTSW |
18 |
20,405,408 (GRCm39) |
missense |
probably benign |
0.06 |
|
R5889:Dsg1c
|
UTSW |
18 |
20,416,658 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R6513:Dsg1c
|
UTSW |
18 |
20,407,687 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6596:Dsg1c
|
UTSW |
18 |
20,403,581 (GRCm39) |
splice site |
probably null |
|
|
R6941:Dsg1c
|
UTSW |
18 |
20,400,980 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7041:Dsg1c
|
UTSW |
18 |
20,399,201 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7061:Dsg1c
|
UTSW |
18 |
20,410,066 (GRCm39) |
missense |
probably benign |
|
|
R7240:Dsg1c
|
UTSW |
18 |
20,416,166 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8048:Dsg1c
|
UTSW |
18 |
20,407,824 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8092:Dsg1c
|
UTSW |
18 |
20,415,029 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8103:Dsg1c
|
UTSW |
18 |
20,416,171 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8117:Dsg1c
|
UTSW |
18 |
20,410,016 (GRCm39) |
missense |
probably benign |
|
|
R8192:Dsg1c
|
UTSW |
18 |
20,399,255 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8801:Dsg1c
|
UTSW |
18 |
20,410,022 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9059:Dsg1c
|
UTSW |
18 |
20,408,306 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9152:Dsg1c
|
UTSW |
18 |
20,416,329 (GRCm39) |
missense |
probably benign |
0.06 |
|
R9292:Dsg1c
|
UTSW |
18 |
20,416,775 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9469:Dsg1c
|
UTSW |
18 |
20,400,947 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9596:Dsg1c
|
UTSW |
18 |
20,416,361 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9619:Dsg1c
|
UTSW |
18 |
20,416,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9628:Dsg1c
|
UTSW |
18 |
20,397,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9710:Dsg1c
|
UTSW |
18 |
20,410,044 (GRCm39) |
missense |
probably benign |
|
|
X0026:Dsg1c
|
UTSW |
18 |
20,416,315 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1176:Dsg1c
|
UTSW |
18 |
20,416,630 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Z1177:Dsg1c
|
UTSW |
18 |
20,398,006 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GTACAGGATCTCTCACTTGCTTTGC -3'
(R):5'- ATGCTTTCACCAAACCTGATG -3'
Sequencing Primer
(F):5'- CTTGTTCCAGTATGACATCACAATTG -3'
(R):5'- AATTTTGAATGCTTGTTTTCCAGAG -3'
|
| Posted On |
2014-06-30 |
Incidental Mutation