Mutagenetix > Incidental Mutations

Incidental Mutation 'R1903:Tnfaip3'

209961

Institutional Source

Beutler Lab

Gene Symbol

Tnfaip3

Ensembl Gene

ENSMUSG00000019850

Gene Name

tumor necrosis factor, alpha-induced protein 3

Synonyms

A20, zinc finger protein A20, Tnfip3

MMRRC Submission

039923-MU

Accession Numbers

Is this an essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1903 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

19000910-19015657 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 19008189 bp

Zygosity

Heterozygous

Amino Acid Change

Lysine to Glutamic Acid at position 148 (K148E)

Ref Sequence

ENSEMBL: ENSMUSP00000101167 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000019997] [ENSMUST00000105527] [ENSMUST00000122863] [ENSMUST00000146388]

Predicted Effect

probably benign
Transcript: ENSMUST00000019997
AA Change: K148E

PolyPhen 2 Score 0.189 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000019997
Gene: ENSMUSG00000019850
AA Change: K148E

Domain	Start	End	E-Value	Type
Pfam:OTU	98	257	1.2e-30	PFAM
ZnF_A20	384	409	8.06e-9	SMART
low complexity region	425	436	N/A	INTRINSIC
ZnF_A20	467	492	3.76e-9	SMART
ZnF_A20	503	526	4.74e-6	SMART
low complexity region	528	543	N/A	INTRINSIC
ZnF_A20	589	614	6.01e-8	SMART
ZnF_A20	639	664	1.56e-6	SMART
ZnF_A20	698	723	1.68e-6	SMART
ZnF_A20	744	769	2.81e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105527
AA Change: K148E

PolyPhen 2 Score 0.189 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000101167
Gene: ENSMUSG00000019850
AA Change: K148E

Domain	Start	End	E-Value	Type
Pfam:OTU	98	257	7.8e-34	PFAM
ZnF_A20	384	409	8.06e-9	SMART
low complexity region	425	436	N/A	INTRINSIC
ZnF_A20	467	492	3.76e-9	SMART
ZnF_A20	503	526	4.74e-6	SMART
low complexity region	528	543	N/A	INTRINSIC
ZnF_A20	589	614	6.01e-8	SMART
ZnF_A20	639	664	1.56e-6	SMART
ZnF_A20	698	723	1.68e-6	SMART
ZnF_A20	744	769	2.81e-8	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000122863

SMART Domains

Protein: ENSMUSP00000116318
Gene: ENSMUSG00000019850

Domain	Start	End	E-Value	Type
PDB:2VFJ\|D	1	122	2e-83	PDB
SCOP:d1e3ha3	18	109	2e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000146388

SMART Domains

Protein: ENSMUSP00000120627
Gene: ENSMUSG00000019850

Domain	Start	End	E-Value	Type
PDB:3ZJG\|B	1	87	1e-56	PDB

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154590

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154749

Coding Region Coverage

1x: 97.3%
3x: 96.7%
10x: 95.0%
20x: 91.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was identified as a gene whose expression is rapidly induced by the tumor necrosis factor (TNF). The protein encoded by this gene is a zinc finger protein and ubiqitin-editing enzyme, and has been shown to inhibit NF-kappa B activation as well as TNF-mediated apoptosis. The encoded protein, which has both ubiquitin ligase and deubiquitinase activities, is involved in the cytokine-mediated immune and inflammatory responses. Several transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2012]
PHENOTYPE: Homozygous null mice display runting, severe multi-organ inflammation, hypersensitivity to lipopolysaccharide and TNF, and premature death. Older mice homozygous for point mutations that disrupt deubiquitinating activity develop splenomegaly and show an increased number of myeloid cells. [provided by MGI curators]

Allele List at MGI

All alleles(4) : Targeted, knock-out(2) Targeted, other(2)

Other mutations in this stock

Total: 120 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700017B05Rik	A	C	9: 57,258,352	S246R	possibly damaging	Het
Abca13	C	T	11: 9,466,411	R4058C	probably benign	Het
Acacb	A	T	5: 114,165,734	R73*	probably null	Het
Adam22	C	T	5: 8,134,525	C489Y	probably damaging	Het
Agap3	A	T	5: 24,493,013	K460I	probably damaging	Het
Ak4	T	C	4: 101,463,636	I214T	possibly damaging	Het
Anpep	C	T	7: 79,838,256	E518K	probably benign	Het
Arrb2	T	A	11: 70,437,982	H221Q	probably damaging	Het
Atl1	T	G	12: 69,959,275	F452V	probably damaging	Het
Atp8b5	A	G	4: 43,357,063	T604A	probably damaging	Het
BC005561	T	A	5: 104,518,330	S239R	probably benign	Het
Bglap3	T	C	3: 88,368,761	I95V	probably benign	Het
Ccdc88a	G	T	11: 29,461,788	M532I	probably benign	Het
Ccnl1	A	G	3: 65,946,911	S430P	possibly damaging	Het
Cdk5rap2	A	T	4: 70,403,554		probably null	Het
Cep126	A	T	9: 8,120,747	Y92N	possibly damaging	Het
Cfap44	A	C	16: 44,422,374	T714P	probably benign	Het
Cnga1	T	G	5: 72,616,725	D90A	possibly damaging	Het
Cnot1	T	C	8: 95,743,121	I1369V	possibly damaging	Het
Coq3	T	C	4: 21,910,466	S314P	probably damaging	Het
Crhr1	A	G	11: 104,169,849	R151G	probably damaging	Het
Crybg2	A	G	4: 134,078,856	I930V	probably damaging	Het
Ctcf	T	A	8: 105,675,988		probably null	Het
Dct	T	C	14: 118,034,278	N380S	probably benign	Het
Decr2	A	T	17: 26,087,413	L83Q	probably damaging	Het
Depdc5	CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	5: 32,910,407		probably benign	Het
Dgkb	T	C	12: 38,166,777		probably null	Het
Dnah1	T	C	14: 31,319,759	D85G	probably damaging	Het
Dnah7a	T	C	1: 53,535,478	D1709G	probably damaging	Het
Dnajc13	A	C	9: 104,228,937	L346R	probably damaging	Het
Dsc1	A	T	18: 20,095,988	V415D	probably damaging	Het
Duox2	T	A	2: 122,295,351	I296F	probably damaging	Het
Ece2	T	A	16: 20,645,172	L890H	probably damaging	Het
Ecsit	A	G	9: 22,076,519	S75P	possibly damaging	Het
Enpp3	A	G	10: 24,778,789	C664R	probably damaging	Het
Evpl	G	T	11: 116,227,028	D778E	probably damaging	Het
Eya3	T	A	4: 132,721,352		probably null	Het
Fam217b	A	T	2: 178,420,581	I113F	probably benign	Het
Galnt6	G	A	15: 100,716,118	P101S	possibly damaging	Het
Gm11487	T	A	4: 73,403,438	Y120F	probably damaging	Het
Gm281	C	T	14: 13,829,657	S695N	possibly damaging	Het
Gm379	G	A	X: 108,664,264	Q210*	probably null	Het
Grk4	A	T	5: 34,676,187		probably null	Het
Gtf3c4	A	G	2: 28,839,956	V91A	probably benign	Het
Hcfc2	G	T	10: 82,702,558	G143V	probably damaging	Het
Heatr4	A	C	12: 83,958,447	H710Q	probably damaging	Het
Htr3a	A	T	9: 48,906,381	D97E	probably damaging	Het
Htr4	T	G	18: 62,428,122	F151L	probably benign	Het
Il22ra1	A	T	4: 135,750,908	Q430L	probably damaging	Het
Invs	T	A	4: 48,402,824		probably null	Het
Ip6k1	G	A	9: 108,040,996	E77K	possibly damaging	Het
Irs1	T	C	1: 82,289,461	S345G	probably damaging	Het
Kdm4a	A	G	4: 118,160,399	V490A	probably benign	Het
Kif26a	C	T	12: 112,175,540	R743C	probably damaging	Het
Kif28	A	G	1: 179,702,523	V691A	possibly damaging	Het
Klhl5	T	A	5: 65,166,987	L696Q	probably benign	Het
Krtap5-1	T	C	7: 142,296,347		probably benign	Het
Lama2	A	C	10: 27,188,399	D1195E	probably damaging	Het
Lamb1	T	G	12: 31,329,210	L1722R	probably damaging	Het
Lrp11	T	A	10: 7,623,780	L245Q	probably damaging	Het
Ltbp2	T	C	12: 84,830,105	E422G	probably benign	Het
Man2b1	T	A	8: 85,086,822	D214E	probably damaging	Het
Mlxipl	A	T	5: 135,133,568	D628V	possibly damaging	Het
Myo18b	G	A	5: 112,692,758	R2390C	probably damaging	Het
Mypn	T	A	10: 63,123,397	R1048S	probably benign	Het
Napepld	A	G	5: 21,665,272	S383P	probably damaging	Het
Napsa	A	G	7: 44,581,736	T130A	probably damaging	Het
Nbr1	T	C	11: 101,575,152	I716T	probably damaging	Het
Nexn	A	T	3: 152,248,181	M212K	probably damaging	Het
Nlrp9b	T	A	7: 20,023,257	S140T	probably benign	Het
Nxpe2	T	C	9: 48,319,606	T488A	probably benign	Het
Olfr1051	C	T	2: 86,275,846	V214I	probably benign	Het
Olfr1420	A	T	19: 11,896,549	Y176F	probably benign	Het
Olfr1512	T	G	14: 52,372,717	Q112P	possibly damaging	Het
Olfr209	A	T	16: 59,362,163	D18E	probably benign	Het
Olfr834	A	T	9: 18,988,896	K303*	probably null	Het
Osbpl5	T	C	7: 143,703,181	D404G	possibly damaging	Het
Pan2	T	G	10: 128,308,368	L162R	probably damaging	Het
Parp1	G	T	1: 180,588,670	V545F	probably damaging	Het
Pcdh18	A	G	3: 49,755,447	V473A	probably benign	Het
Plb1	A	T	5: 32,291,238	N350I	probably damaging	Het
Polr1a	A	G	6: 71,967,914	K1318R	probably benign	Het
Ppp1r18	C	T	17: 35,873,846	P130S	probably damaging	Het
Prss48	C	T	3: 85,998,307	W86*	probably null	Het
Rab3c	A	T	13: 110,084,210	I137N	probably damaging	Het
Rab3gap2	G	C	1: 185,221,902	R57P	probably benign	Het
Rad54l2	A	C	9: 106,693,717		probably null	Het
Ralgapb	C	A	2: 158,495,563	N1147K	probably benign	Het
Rfx7	C	T	9: 72,616,811	R428C	probably damaging	Het
Robo1	A	G	16: 72,960,204	Q351R	probably null	Het
Samd4	T	C	14: 47,074,128	F81S	probably damaging	Het
Shprh	T	A	10: 11,183,797	Y1097*	probably null	Het
Sik3	C	G	9: 46,221,089	H1276Q	probably benign	Het
Slc24a4	T	A	12: 102,131,617	D79E	probably benign	Het
Slc7a13	A	T	4: 19,839,254	I286F	probably benign	Het
Smarca1	G	A	X: 47,849,963	Q723*	probably null	Het
Spata31d1b	T	C	13: 59,718,068	L1010P	probably damaging	Het
Sult2a1	T	C	7: 13,835,975	S111G	possibly damaging	Het
Tecpr2	C	T	12: 110,947,912	T1219M	probably damaging	Het
Tesk1	T	C	4: 43,446,998	M462T	probably benign	Het
Tmem171	C	A	13: 98,686,416	G292*	probably null	Het
Tmtc2	G	T	10: 105,190,108	T833N	probably benign	Het
Tnc	G	T	4: 64,000,062	T1204K	probably benign	Het
Tnrc18	G	A	5: 142,815,140	S21F	probably damaging	Het
Tns4	T	C	11: 99,075,575	T425A	probably damaging	Het
Tox	T	A	4: 6,688,948	Y472F	probably damaging	Het
Trak2	A	T	1: 58,918,855		probably null	Het
Trim33	T	A	3: 103,337,444	Y716N	probably damaging	Het
Trrap	T	G	5: 144,816,053	I1813R	probably damaging	Het
Ttc29	A	G	8: 78,251,732	E137G	probably benign	Het
Ube2j2	A	G	4: 155,949,026	K19R	probably benign	Het
Ubxn2b	T	C	4: 6,208,889	I206T	possibly damaging	Het
Usp40	A	G	1: 87,982,056	F559L	probably benign	Het
Utp4	T	A	8: 106,912,350		probably null	Het
Vac14	A	G	8: 110,682,534	N524S	probably benign	Het
Vps13c	T	C	9: 67,894,052	S605P	probably damaging	Het
Vwa5b2	G	T	16: 20,604,832	S1165I	possibly damaging	Het
Zdhhc19	C	T	16: 32,498,413	R28*	probably null	Het
Zfp106	T	C	2: 120,526,848	I1189V	probably benign	Het
Zfp189	C	T	4: 49,529,511	Q205*	probably null	Het

Other mutations in Tnfaip3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
lasvegas	APN	10	19010758	unclassified	probably benign
IGL00840:Tnfaip3	APN	10	19005126	missense	probably damaging	1.00
IGL00966:Tnfaip3	APN	10	19005137	missense	probably damaging	1.00
IGL01080:Tnfaip3	APN	10	19011655	missense	probably benign	0.03
IGL01736:Tnfaip3	APN	10	19006901	missense	probably damaging	1.00
IGL02318:Tnfaip3	APN	10	19004467	missense	probably benign	0.04
IGL02703:Tnfaip3	APN	10	19007032	missense	probably damaging	0.98
IGL03032:Tnfaip3	APN	10	19004609	missense	probably benign
IGL03331:Tnfaip3	APN	10	19011601	missense	possibly damaging	0.63
IGL03389:Tnfaip3	APN	10	19004987	missense	probably benign	0.03
PIT4243001:Tnfaip3	UTSW	10	19011574	missense	probably damaging	1.00
PIT4480001:Tnfaip3	UTSW	10	19007323	missense	probably benign
R0044:Tnfaip3	UTSW	10	19011626	missense	probably damaging	0.98
R0044:Tnfaip3	UTSW	10	19011626	missense	probably damaging	0.98
R0056:Tnfaip3	UTSW	10	19005293	missense	probably damaging	1.00
R0195:Tnfaip3	UTSW	10	19005713	missense	probably damaging	1.00
R0226:Tnfaip3	UTSW	10	19002747	missense	probably damaging	1.00
R0369:Tnfaip3	UTSW	10	19006912	nonsense	probably null
R0744:Tnfaip3	UTSW	10	19002949	missense	probably benign	0.09
R0833:Tnfaip3	UTSW	10	19002949	missense	probably benign	0.09
R1469:Tnfaip3	UTSW	10	19008269	missense	probably damaging	1.00
R1469:Tnfaip3	UTSW	10	19008269	missense	probably damaging	1.00
R1876:Tnfaip3	UTSW	10	19004934	missense	possibly damaging	0.81
R1902:Tnfaip3	UTSW	10	19008189	missense	probably benign	0.19
R1922:Tnfaip3	UTSW	10	19003607	missense	possibly damaging	0.51
R1973:Tnfaip3	UTSW	10	19004504	missense	probably damaging	0.98
R2040:Tnfaip3	UTSW	10	19008152	missense	possibly damaging	0.89
R2513:Tnfaip3	UTSW	10	19005659	missense	probably benign	0.00
R2936:Tnfaip3	UTSW	10	19011609	missense	probably damaging	1.00
R3607:Tnfaip3	UTSW	10	19005602	missense	probably damaging	1.00
R4386:Tnfaip3	UTSW	10	19007010	missense	probably damaging	1.00
R4483:Tnfaip3	UTSW	10	19011627	missense	probably damaging	1.00
R4673:Tnfaip3	UTSW	10	19011832	intron	probably benign
R4879:Tnfaip3	UTSW	10	19005573	missense	probably benign	0.03
R5082:Tnfaip3	UTSW	10	19005284	missense	probably damaging	1.00
R5524:Tnfaip3	UTSW	10	19008195	missense	probably damaging	0.98
R6559:Tnfaip3	UTSW	10	19007248	missense	probably damaging	1.00
R6776:Tnfaip3	UTSW	10	19005576	missense	probably benign	0.02
R6853:Tnfaip3	UTSW	10	19003751	missense	probably benign
R6891:Tnfaip3	UTSW	10	19011669	missense	probably damaging	1.00
R7144:Tnfaip3	UTSW	10	19007281	missense	probably benign	0.00
R7693:Tnfaip3	UTSW	10	19004780	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- AGTGGGCAATGCTTAAGTCG -3'
(R):5'- CCAGCAATGGTCTTAGTGTCTC -3'

Sequencing Primer
(F):5'- GGGCAATGCTTAAGTCGACTCATATG -3'
(R):5'- AGTGTCTCCTGATAACCTTGGAAG -3'

Posted On

2014-06-30