Mutagenetix > Incidental Mutation

Incidental Mutation 'R1872:Zmynd11'

210879

Institutional Source

Beutler Lab

Gene Symbol

Zmynd11

Ensembl Gene

ENSMUSG00000021156

Gene Name

zinc finger, MYND domain containing 11

Synonyms

2210402G22Rik

MMRRC Submission

039894-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.650) question?

Stock #

R1872 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

9734869-9815366 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 9748737 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 108 (I108T)

Ref Sequence

ENSEMBL: ENSMUSP00000106263 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000062658] [ENSMUST00000110633] [ENSMUST00000110634] [ENSMUST00000110635] [ENSMUST00000110636] [ENSMUST00000110637] [ENSMUST00000110638] [ENSMUST00000152725] [ENSMUST00000128658] [ENSMUST00000146059] [ENSMUST00000144642] [ENSMUST00000130151] [ENSMUST00000154994] [ENSMUST00000157035] [ENSMUST00000223421] [ENSMUST00000222475] [ENSMUST00000220996]

AlphaFold

Q8R5C8

Predicted Effect

probably benign
Transcript: ENSMUST00000062658
AA Change: I94T

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000059767
Gene: ENSMUSG00000021156
AA Change: I94T

Domain	Start	End	E-Value	Type
BROMO	97	203	1.03e-18	SMART
PWWP	224	275	1.96e-21	SMART
low complexity region	318	331	N/A	INTRINSIC
low complexity region	351	362	N/A	INTRINSIC
coiled coil region	433	473	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110633
AA Change: I108T

PolyPhen 2 Score 0.880 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000106263
Gene: ENSMUSG00000021156
AA Change: I108T

Domain	Start	End	E-Value	Type
PHD	62	106	4.19e-7	SMART
RING	66	105	8.31e-1	SMART
BROMO	111	217	1.03e-18	SMART
PWWP	238	289	1.96e-21	SMART
low complexity region	332	345	N/A	INTRINSIC
low complexity region	418	437	N/A	INTRINSIC
coiled coil region	503	543	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110634
AA Change: I148T

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000106264
Gene: ENSMUSG00000021156
AA Change: I148T

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	151	257	1.03e-18	SMART
PWWP	278	329	1.96e-21	SMART
low complexity region	372	385	N/A	INTRINSIC
low complexity region	405	416	N/A	INTRINSIC
coiled coil region	487	527	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110635
AA Change: I148T

PolyPhen 2 Score 0.041 (Sensitivity: 0.94; Specificity: 0.83)

SMART Domains

Protein: ENSMUSP00000106265
Gene: ENSMUSG00000021156
AA Change: I148T

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	133	226	3.35e-4	SMART
PWWP	247	298	1.96e-21	SMART
low complexity region	341	354	N/A	INTRINSIC
low complexity region	374	385	N/A	INTRINSIC
coiled coil region	456	496	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110636
AA Change: I148T

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000106266
Gene: ENSMUSG00000021156
AA Change: I148T

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	151	257	1.03e-18	SMART
PWWP	278	329	1.96e-21	SMART
low complexity region	372	385	N/A	INTRINSIC
low complexity region	405	416	N/A	INTRINSIC
coiled coil region	487	527	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110637
AA Change: I94T

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000106267
Gene: ENSMUSG00000021156
AA Change: I94T

Domain	Start	End	E-Value	Type
BROMO	97	203	1.03e-18	SMART
PWWP	224	275	1.96e-21	SMART
low complexity region	318	331	N/A	INTRINSIC
low complexity region	351	362	N/A	INTRINSIC
coiled coil region	433	473	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000110638
AA Change: I94T

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000106268
Gene: ENSMUSG00000021156
AA Change: I94T

Domain	Start	End	E-Value	Type
BROMO	97	203	1.03e-18	SMART
PWWP	224	275	1.96e-21	SMART
low complexity region	318	331	N/A	INTRINSIC
low complexity region	404	423	N/A	INTRINSIC
coiled coil region	489	529	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000152725
AA Change: I148T

PolyPhen 2 Score 0.025 (Sensitivity: 0.95; Specificity: 0.81)

SMART Domains

Protein: ENSMUSP00000118002
Gene: ENSMUSG00000021156
AA Change: I148T

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
Blast:BROMO	151	203	8e-31	BLAST
PDB:4N4I\|A	153	203	2e-27	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000128658
AA Change: I94T

PolyPhen 2 Score 0.106 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000121574
Gene: ENSMUSG00000021156
AA Change: I94T

Domain	Start	End	E-Value	Type
Blast:BROMO	97	149	8e-32	BLAST
PDB:4N4I\|A	99	149	6e-29	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000146059
AA Change: I54T

PolyPhen 2 Score 0.016 (Sensitivity: 0.95; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000122133
Gene: ENSMUSG00000021156
AA Change: I54T

Domain	Start	End	E-Value	Type
Blast:BROMO	38	81	1e-23	BLAST
PDB:4N4I\|A	59	89	2e-13	PDB

Predicted Effect

probably benign
Transcript: ENSMUST00000144642
AA Change: I148T

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

SMART Domains

Protein: ENSMUSP00000117375
Gene: ENSMUSG00000021156
AA Change: I148T

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000130151
AA Change: I163T

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000118964
Gene: ENSMUSG00000021156
AA Change: I163T

Domain	Start	End	E-Value	Type
PHD	117	161	4.19e-7	SMART
RING	121	160	8.31e-1	SMART
BROMO	166	272	1.03e-18	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000154994
AA Change: I148T

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000116635
Gene: ENSMUSG00000021156
AA Change: I148T

Domain	Start	End	E-Value	Type
PHD	102	146	4.19e-7	SMART
RING	106	145	8.31e-1	SMART
BROMO	151	249	1.59e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000140180

Predicted Effect

probably benign
Transcript: ENSMUST00000157035

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138039

Predicted Effect

probably benign
Transcript: ENSMUST00000223421
AA Change: I148T

PolyPhen 2 Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)

Predicted Effect

probably benign
Transcript: ENSMUST00000222475
AA Change: I94T

PolyPhen 2 Score 0.029 (Sensitivity: 0.95; Specificity: 0.82)

Predicted Effect

probably benign
Transcript: ENSMUST00000220996

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000222927

Meta Mutation Damage Score

0.0865

Coding Region Coverage

1x: 97.3%
3x: 96.8%
10x: 95.4%
20x: 93.0%

Validation Efficiency

97% (113/117)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene was first identified by its ability to bind the adenovirus E1A protein. The protein localizes to the nucleus. It functions as a transcriptional repressor, and expression of E1A inhibits this repression. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 108 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700003H04Rik	C	T	3: 124,350,493 (GRCm39)	C133Y	unknown	Het
Abce1	A	G	8: 80,416,880 (GRCm39)	M377T	possibly damaging	Het
Adam25	A	T	8: 41,208,263 (GRCm39)	R510*	probably null	Het
Adamts12	G	T	15: 11,217,966 (GRCm39)	E308*	probably null	Het
Adgrg3	C	A	8: 95,760,070 (GRCm39)	N96K	possibly damaging	Het
Afdn	T	C	17: 14,101,578 (GRCm39)	V1022A	probably damaging	Het
Akap9	T	C	5: 4,051,406 (GRCm39)	V1391A	probably damaging	Het
Akip1	A	G	7: 109,310,982 (GRCm39)	Y174C	probably damaging	Het
Aoc1l1	A	G	6: 48,952,554 (GRCm39)	I160V	probably benign	Het
Ap3b2	T	C	7: 81,113,898 (GRCm39)	T830A	unknown	Het
Aph1a	A	G	3: 95,802,876 (GRCm39)	T159A	probably damaging	Het
Ccdc146	T	C	5: 21,506,288 (GRCm39)	T718A	probably benign	Het
Cdk5r2	T	C	1: 74,894,981 (GRCm39)	L242P	probably damaging	Het
Cep97	T	A	16: 55,748,229 (GRCm39)	N67I	probably damaging	Het
Cgas	T	C	9: 78,340,484 (GRCm39)	D416G	probably benign	Het
Chic2	A	T	5: 75,172,140 (GRCm39)	W121R	possibly damaging	Het
Clock	A	G	5: 76,396,309 (GRCm39)	S147P	possibly damaging	Het
Cntnap5a	T	G	1: 116,016,940 (GRCm39)	S178A	probably benign	Het
Col11a2	C	A	17: 34,281,529 (GRCm39)		probably benign	Het
Col6a3	T	A	1: 90,757,936 (GRCm39)	H6L	probably damaging	Het
Cpne5	T	C	17: 29,423,667 (GRCm39)	N154D	probably benign	Het
Ctsz	T	G	2: 174,269,769 (GRCm39)	K273Q	probably benign	Het
Cybrd1	G	A	2: 70,960,104 (GRCm39)	V101M	probably benign	Het
Cyp2c23	T	A	19: 43,993,990 (GRCm39)	K459*	probably null	Het
Cyp4a31	A	T	4: 115,431,933 (GRCm39)	H419L	probably damaging	Het
D930020B18Rik	G	A	10: 121,477,879 (GRCm39)	V35M	probably damaging	Het
Depp1	G	A	6: 116,628,683 (GRCm39)	V9M	possibly damaging	Het
Dnah9	C	T	11: 65,928,316 (GRCm39)	V2118M	probably benign	Het
Dtna	T	C	18: 23,730,617 (GRCm39)		probably null	Het
Ednra	C	T	8: 78,447,025 (GRCm39)	V18I	possibly damaging	Het
Elac1	T	C	18: 73,875,717 (GRCm39)	R105G	probably benign	Het
Exoc2	A	G	13: 31,006,644 (GRCm39)	S844P	probably benign	Het
Fam185a	A	T	5: 21,685,328 (GRCm39)		probably null	Het
Fam204a	A	G	19: 60,187,881 (GRCm39)	M233T	possibly damaging	Het
Fat1	C	A	8: 45,406,341 (GRCm39)	H1031N	probably benign	Het
Fat1	T	A	8: 45,491,386 (GRCm39)	Y3816N	probably damaging	Het
Fbxo38	C	T	18: 62,650,094 (GRCm39)	R621Q	probably benign	Het
Fhod3	C	A	18: 25,263,667 (GRCm39)	R1524S	probably damaging	Het
Fnip1	A	T	11: 54,378,561 (GRCm39)	R192W	probably damaging	Het
Frem3	T	A	8: 81,339,205 (GRCm39)	H499Q	probably damaging	Het
Gab2	C	T	7: 96,948,250 (GRCm39)	T280I	probably damaging	Het
Gdpgp1	A	G	7: 79,888,172 (GRCm39)	R68G	probably benign	Het
Gm10382	C	T	5: 125,466,624 (GRCm39)		probably benign	Het
Gmps	A	G	3: 63,908,938 (GRCm39)	H480R	probably benign	Het
Hecw1	G	A	13: 14,455,034 (GRCm39)	R674*	probably null	Het
Herc2	T	A	7: 55,807,257 (GRCm39)	F2478L	probably benign	Het
Homer2	C	T	7: 81,286,150 (GRCm39)	V21M	probably damaging	Het
Ifna9	A	G	4: 88,510,492 (GRCm39)	M44T	probably damaging	Het
Igfl3	A	G	7: 17,913,821 (GRCm39)	D57G	possibly damaging	Het
Jcad	T	C	18: 4,673,048 (GRCm39)	M270T	probably benign	Het
Kdm5b	T	C	1: 134,552,732 (GRCm39)	L1236P	probably damaging	Het
Kif14	T	A	1: 136,414,096 (GRCm39)	L724Q	probably damaging	Het
Lhb	T	C	7: 45,070,757 (GRCm39)	V45A	probably damaging	Het
Lhpp	A	G	7: 132,235,816 (GRCm39)	N134D	probably benign	Het
Mas1	T	C	17: 13,061,078 (GRCm39)	Y115C	probably damaging	Het
Mgam	A	T	6: 40,638,234 (GRCm39)	K395*	probably null	Het
Mms22l	A	G	4: 24,598,807 (GRCm39)	N1134S	probably damaging	Het
Mrc1	A	G	2: 14,330,192 (GRCm39)		probably null	Het
Mrgprg	G	A	7: 143,318,281 (GRCm39)	S277L	probably damaging	Het
Mrpl49	G	T	19: 6,107,010 (GRCm39)	P60T	possibly damaging	Het
Mrps10	G	A	17: 47,683,377 (GRCm39)	G104D	possibly damaging	Het
Msantd3	A	G	4: 48,552,771 (GRCm39)	Y120C	probably damaging	Het
Mtcl2	A	G	2: 156,882,181 (GRCm39)	C624R	possibly damaging	Het
N4bp2	C	T	5: 65,951,861 (GRCm39)		probably benign	Het
Nbea	A	G	3: 55,550,310 (GRCm39)	V2706A	probably benign	Het
Nfic	T	A	10: 81,256,518 (GRCm39)	M71L	possibly damaging	Het
Ntn4	C	T	10: 93,543,215 (GRCm39)	R314W	probably damaging	Het
Or12e1	A	G	2: 87,022,222 (GRCm39)	T64A	possibly damaging	Het
Or14j4	G	T	17: 37,920,803 (GRCm39)	P280T	probably damaging	Het
Or4a15	A	G	2: 89,192,933 (GRCm39)	L280P	probably damaging	Het
Or4c105	T	A	2: 88,648,280 (GRCm39)	V255E	probably benign	Het
Pak5	T	C	2: 135,927,508 (GRCm39)	I655V	possibly damaging	Het
Pip5k1c	A	G	10: 81,142,153 (GRCm39)	N121S	probably damaging	Het
Plce1	A	T	19: 38,748,521 (GRCm39)	I1737F	probably damaging	Het
Prrt1	T	C	17: 34,849,925 (GRCm39)	L113P	probably damaging	Het
Ptprq	T	A	10: 107,479,860 (GRCm39)	T1137S	probably benign	Het
Recql5	T	C	11: 115,814,135 (GRCm39)	I223V	probably benign	Het
Reg3g	A	T	6: 78,444,836 (GRCm39)	Y47*	probably null	Het
Rgs12	T	G	5: 35,123,165 (GRCm39)	M316R	probably damaging	Het
Ric1	T	C	19: 29,580,068 (GRCm39)	S1290P	probably benign	Het
Rpl36al	A	G	12: 69,229,697 (GRCm39)	C72R	probably damaging	Het
Rplp0	T	A	5: 115,701,374 (GRCm39)	F275L	possibly damaging	Het
Rpp30	G	A	19: 36,064,793 (GRCm39)	V89I	probably benign	Het
Ryr3	A	G	2: 112,539,482 (GRCm39)	F3253L	possibly damaging	Het
Serpina3n	A	T	12: 104,375,203 (GRCm39)	N92Y	probably benign	Het
Setd7	G	T	3: 51,450,252 (GRCm39)	T58N	probably benign	Het
Sh3tc2	T	A	18: 62,144,954 (GRCm39)	L1136Q	probably damaging	Het
Slc35b4	G	A	6: 34,135,440 (GRCm39)	Q291*	probably null	Het
Sort1	A	G	3: 108,248,011 (GRCm39)	N452S	probably benign	Het
Sympk	A	G	7: 18,763,070 (GRCm39)	I46V	probably benign	Het
Syngr2	T	C	11: 117,703,364 (GRCm39)	V60A	probably damaging	Het
Syt17	A	T	7: 118,007,341 (GRCm39)	F318I	probably benign	Het
Tdpoz8	T	A	3: 92,981,729 (GRCm39)	L249H	probably damaging	Het
Tgfb1	T	A	7: 25,391,891 (GRCm39)	L149M	probably damaging	Het
Ticam1	A	T	17: 56,578,897 (GRCm39)	M66K	probably benign	Het
Tmem131	G	T	1: 36,847,008 (GRCm39)	D1363E	probably benign	Het
Tns4	A	C	11: 98,970,926 (GRCm39)	D261E	probably damaging	Het
Trim30a	T	C	7: 104,078,417 (GRCm39)	N220D	probably benign	Het
Trmt10a	T	C	3: 137,862,481 (GRCm39)	L257P	probably damaging	Het
Troap	G	T	15: 98,973,233 (GRCm39)		probably benign	Het
Ttc6	T	C	12: 57,751,338 (GRCm39)		probably null	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Vav1	A	C	17: 57,631,750 (GRCm39)	K775T	probably damaging	Het
Vmn1r236	A	G	17: 21,507,673 (GRCm39)	K264E	possibly damaging	Het
Vmn1r84	A	G	7: 12,096,555 (GRCm39)	V46A	probably benign	Het
Wdr59	A	T	8: 112,185,649 (GRCm39)	W835R	probably damaging	Het
Zfp513	T	G	5: 31,357,767 (GRCm39)	K202T	probably damaging	Het
Zfp7	T	G	15: 76,775,977 (GRCm39)	I673S	probably benign	Het

Other mutations in Zmynd11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00573:Zmynd11	APN	13	9,739,262 (GRCm39)	missense	probably damaging	0.97
IGL00846:Zmynd11	APN	13	9,770,808 (GRCm39)	critical splice donor site	probably null
IGL01606:Zmynd11	APN	13	9,747,724 (GRCm39)	missense	probably damaging	1.00
IGL03229:Zmynd11	APN	13	9,739,601 (GRCm39)	missense	probably damaging	1.00
R1173:Zmynd11	UTSW	13	9,739,585 (GRCm39)	missense	probably damaging	1.00
R1413:Zmynd11	UTSW	13	9,760,256 (GRCm39)	missense	probably damaging	1.00
R1813:Zmynd11	UTSW	13	9,739,616 (GRCm39)	missense	possibly damaging	0.53
R2002:Zmynd11	UTSW	13	9,739,514 (GRCm39)	splice site	probably null
R2991:Zmynd11	UTSW	13	9,745,858 (GRCm39)	missense	probably damaging	0.99
R4273:Zmynd11	UTSW	13	9,747,726 (GRCm39)	missense	probably damaging	1.00
R4708:Zmynd11	UTSW	13	9,745,789 (GRCm39)	missense	probably damaging	0.97
R4718:Zmynd11	UTSW	13	9,739,603 (GRCm39)	missense	possibly damaging	0.86
R5011:Zmynd11	UTSW	13	9,739,479 (GRCm39)	unclassified	probably benign
R5151:Zmynd11	UTSW	13	9,740,953 (GRCm39)	missense	probably damaging	1.00
R5963:Zmynd11	UTSW	13	9,745,931 (GRCm39)	intron	probably benign
R6648:Zmynd11	UTSW	13	9,763,057 (GRCm39)	missense	probably benign	0.11
R7002:Zmynd11	UTSW	13	9,744,366 (GRCm39)	missense	probably damaging	1.00
R7223:Zmynd11	UTSW	13	9,760,198 (GRCm39)	missense	probably benign	0.09
R7322:Zmynd11	UTSW	13	9,740,445 (GRCm39)	missense	possibly damaging	0.53
R7462:Zmynd11	UTSW	13	9,748,720 (GRCm39)	missense	probably benign	0.29
R7500:Zmynd11	UTSW	13	9,785,434 (GRCm39)	missense	probably benign	0.00
R7737:Zmynd11	UTSW	13	9,745,175 (GRCm39)	missense	probably damaging	1.00
R8181:Zmynd11	UTSW	13	9,739,687 (GRCm39)	missense	probably benign	0.08
R8331:Zmynd11	UTSW	13	9,745,190 (GRCm39)	missense	probably benign	0.21
R8853:Zmynd11	UTSW	13	9,740,965 (GRCm39)	missense	probably damaging	0.99
R9115:Zmynd11	UTSW	13	9,743,495 (GRCm39)	missense	probably damaging	1.00
R9184:Zmynd11	UTSW	13	9,743,475 (GRCm39)	missense	probably benign	0.01
R9747:Zmynd11	UTSW	13	9,739,244 (GRCm39)	missense	probably benign	0.10

Predicted Primers

PCR Primer
(F):5'- GCAAAAGTCAAAGTTCATTTCAACA -3'
(R):5'- GGCACTATGTCAAGTACAACATATTT -3'

Sequencing Primer
(F):5'- CTGGGCTACATATAGAGACCTTGTC -3'
(R):5'- TTTCAATTCCCATCTTTTTGAGGG -3'

Posted On

2014-06-30