Mutagenetix > Incidental Mutation

Incidental Mutation 'R1891:Ly6g6d'

211548

Institutional Source

Beutler Lab

Gene Symbol

Ly6g6d

Ensembl Gene

ENSMUSG00000073413

Gene Name

lymphocyte antigen 6 family member G6D

Synonyms

G6d, NG25, MEGT1, G6f, A930024F17Rik, NG32

MMRRC Submission

039911-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1891 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

35290419-35297041 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to C at 35293269 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Stop codon at position 25 (Y25*)

Ref Sequence

ENSEMBL: ENSMUSP00000007259 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000007259] [ENSMUST00000013910] [ENSMUST00000172494] [ENSMUST00000172678] [ENSMUST00000172959] [ENSMUST00000173207] [ENSMUST00000174876] [ENSMUST00000173478]

AlphaFold

Q9Z1Q3

Predicted Effect

probably null
Transcript: ENSMUST00000007259
AA Change: Y25*

SMART Domains

Protein: ENSMUSP00000007259
Gene: ENSMUSG00000073413
AA Change: Y25*

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
low complexity region	121	132	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000013910

SMART Domains

Protein: ENSMUSP00000013910
Gene: ENSMUSG00000013766

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
LU	28	117	1.65e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000172494

SMART Domains

Protein: ENSMUSP00000133645
Gene: ENSMUSG00000013766

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Blast:LU	28	50	1e-8	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172639

Predicted Effect

probably benign
Transcript: ENSMUST00000172678

SMART Domains

Protein: ENSMUSP00000134073
Gene: ENSMUSG00000013766

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
LU	28	117	1.65e-2	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172745

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000172903

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000173120

Predicted Effect

probably benign
Transcript: ENSMUST00000172959

SMART Domains

Protein: ENSMUSP00000133753
Gene: ENSMUSG00000013766

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:Activin_recp	82	143	2.3e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000173207

SMART Domains

Protein: ENSMUSP00000134194
Gene: ENSMUSG00000092586

Domain	Start	End	E-Value	Type
low complexity region	22	39	N/A	INTRINSIC
Blast:LU	48	136	3e-57	BLAST
low complexity region	139	151	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000174876

SMART Domains

Protein: ENSMUSP00000133838
Gene: ENSMUSG00000092586

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Blast:LU	22	56	9e-18	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000173478

SMART Domains

Protein: ENSMUSP00000133510
Gene: ENSMUSG00000092586

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Blast:LU	22	110	2e-57	BLAST
low complexity region	113	125	N/A	INTRINSIC

Coding Region Coverage

1x: 97.5%
3x: 96.9%
10x: 95.4%
20x: 92.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] LY6G6D belongs to a cluster of leukocyte antigen-6 (LY6) genes located in the major histocompatibility complex (MHC) class III region on chromosome 6. Members of the LY6 superfamily typically contain 70 to 80 amino acids, including 8 to 10 cysteines. Most LY6 proteins are attached to the cell surface by a glycosylphosphatidylinositol (GPI) anchor that is directly involved in signal transduction (Mallya et al., 2002 [PubMed 12079290]).[supplied by OMIM, Apr 2009]

Allele List at MGI

Other mutations in this stock

Total: 96 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca7	T	C	10: 79,840,874 (GRCm39)	I921T	possibly damaging	Het
Abca8a	T	C	11: 109,982,433 (GRCm39)	K3R	probably benign	Het
Adgrl3	A	T	5: 81,659,891 (GRCm39)	D152V	probably damaging	Het
Akap6	A	T	12: 53,188,958 (GRCm39)	D2124V	possibly damaging	Het
Akt1	A	G	12: 112,626,009 (GRCm39)	F88L	probably damaging	Het
Ankrd24	T	C	10: 81,479,342 (GRCm39)		probably benign	Het
Arid4b	T	A	13: 14,310,821 (GRCm39)	N141K	possibly damaging	Het
Cacna1c	C	A	6: 118,753,480 (GRCm39)	D219Y	probably damaging	Het
Ccdc113	A	G	8: 96,267,544 (GRCm39)	K170E	probably damaging	Het
Ceacam9	A	G	7: 16,457,880 (GRCm39)	E136G	probably damaging	Het
Cfap43	A	G	19: 47,802,380 (GRCm39)	L333P	probably damaging	Het
Chl1	A	G	6: 103,691,544 (GRCm39)	D1062G	possibly damaging	Het
Cimip4	T	A	15: 78,262,952 (GRCm39)	D234V	probably damaging	Het
Ckb	TCCACCACCA	TCCACCA	12: 111,636,079 (GRCm39)		probably benign	Het
Clpp	T	A	17: 57,298,307 (GRCm39)	V91E	probably damaging	Het
Cndp1	A	T	18: 84,637,758 (GRCm39)	H325Q	probably null	Het
Cngb3	A	G	4: 19,366,446 (GRCm39)	N169S	probably benign	Het
Cog6	A	C	3: 52,890,601 (GRCm39)	I613R	probably benign	Het
Creb3l1	A	G	2: 91,817,385 (GRCm39)	L376P	probably damaging	Het
Cry2	A	T	2: 92,243,985 (GRCm39)	V396D	possibly damaging	Het
Cxxc5	A	G	18: 35,992,318 (GRCm39)	M240V	possibly damaging	Het
Defa28	G	A	8: 22,073,801 (GRCm39)	C68Y	probably damaging	Het
Ecd	A	G	14: 20,388,227 (GRCm39)	I187T	probably damaging	Het
Erg28	A	G	12: 85,862,962 (GRCm39)	S117P	probably benign	Het
Ergic2	A	T	6: 148,084,577 (GRCm39)	C319S	probably damaging	Het
Ess2	C	T	16: 17,725,644 (GRCm39)	W183*	probably null	Het
Evc2	A	C	5: 37,549,423 (GRCm39)	D773A	probably damaging	Het
Fam151b	T	A	13: 92,586,678 (GRCm39)	T252S	probably benign	Het
Fbxo28	A	T	1: 182,145,389 (GRCm39)	M233K	probably benign	Het
Fbxw26	T	G	9: 109,551,232 (GRCm39)	D355A	probably benign	Het
Gm4884	G	C	7: 40,692,539 (GRCm39)	E169D	possibly damaging	Het
Hk2	C	T	6: 82,726,264 (GRCm39)	R94Q	probably benign	Het
Hps4	G	A	5: 112,517,422 (GRCm39)		probably null	Het
Hspg2	T	A	4: 137,292,801 (GRCm39)	D4126E	probably damaging	Het
Kif13a	T	C	13: 47,082,695 (GRCm39)	E48G	possibly damaging	Het
Krt31	T	A	11: 99,938,634 (GRCm39)	N320Y	probably damaging	Het
Lca5	T	C	9: 83,277,661 (GRCm39)	Y561C	probably damaging	Het
Lrrk1	G	A	7: 65,929,048 (GRCm39)	L1195F	probably damaging	Het
Map3k13	T	G	16: 21,729,836 (GRCm39)	M489R	probably damaging	Het
Mcm6	C	T	1: 128,263,547 (GRCm39)	R658H	probably damaging	Het
Mecp2	C	T	X: 73,080,781 (GRCm39)	A79T	probably damaging	Het
Mitf	A	G	6: 97,918,237 (GRCm39)	T94A	probably benign	Het
Mpo	T	A	11: 87,692,106 (GRCm39)	L513*	probably null	Het
Mst1r	T	A	9: 107,790,661 (GRCm39)	N722K	probably damaging	Het
Mthfd1l	T	A	10: 3,982,284 (GRCm39)	L497*	probably null	Het
Mtus1	C	T	8: 41,537,362 (GRCm39)	S118N	probably damaging	Het
Mybbp1a	C	T	11: 72,336,863 (GRCm39)	T565I	probably benign	Het
Naip2	C	T	13: 100,291,395 (GRCm39)	R1181K	probably benign	Het
Nbas	T	C	12: 13,440,973 (GRCm39)	M1101T	possibly damaging	Het
Odad3	G	T	9: 21,906,677 (GRCm39)		probably null	Het
Or2y1b	T	C	11: 49,208,684 (GRCm39)	F104L	probably benign	Het
Or4f60	A	T	2: 111,902,739 (GRCm39)	L63Q	probably damaging	Het
Or52l1	A	T	7: 104,829,754 (GRCm39)	Y270*	probably null	Het
Or5ae1	T	A	7: 84,565,461 (GRCm39)	V158D	possibly damaging	Het
Or6c33	T	C	10: 129,853,439 (GRCm39)	S70P	probably damaging	Het
Or7a40	T	A	16: 16,491,441 (GRCm39)	I135F	probably damaging	Het
Or7g20	T	C	9: 18,947,274 (GRCm39)	L285S	probably damaging	Het
Or8b12b	T	A	9: 37,684,163 (GRCm39)	D69E	possibly damaging	Het
Oxct2b	A	G	4: 123,010,938 (GRCm39)	D286G	probably benign	Het
Pax5	A	T	4: 44,691,859 (GRCm39)	V129E	probably damaging	Het
Pax7	G	A	4: 139,511,937 (GRCm39)	R215C	probably damaging	Het
Pcdh7	A	T	5: 57,878,217 (GRCm39)	I591F	probably damaging	Het
Pcdhb22	T	C	18: 37,652,357 (GRCm39)	V275A	probably damaging	Het
Pkp3	C	T	7: 140,663,969 (GRCm39)		probably null	Het
Plekhb1	A	G	7: 100,304,599 (GRCm39)	L35P	probably damaging	Het
Pole	T	A	5: 110,480,408 (GRCm39)	F1993Y	probably damaging	Het
Pramel28	A	T	4: 143,693,235 (GRCm39)	V81E	probably damaging	Het
Prdx1	T	C	4: 116,556,451 (GRCm39)	*200R	probably null	Het
Prkdc	C	A	16: 15,543,300 (GRCm39)	T1777N	probably benign	Het
Prss59	A	T	6: 40,902,967 (GRCm39)	M135K	possibly damaging	Het
Ptpn14	G	A	1: 189,530,850 (GRCm39)	V106M	probably damaging	Het
Ptpn23	T	C	9: 110,222,868 (GRCm39)	E63G	possibly damaging	Het
Qser1	A	C	2: 104,620,444 (GRCm39)	S123A	probably benign	Het
Rbm11	A	G	16: 75,397,675 (GRCm39)	N202D	possibly damaging	Het
Robo3	T	A	9: 37,339,351 (GRCm39)	Y212F	probably damaging	Het
Sde2	G	A	1: 180,687,573 (GRCm39)	S153N	probably benign	Het
Serpinb1c	T	A	13: 33,068,235 (GRCm39)	D179V	probably benign	Het
Skint6	T	C	4: 112,703,893 (GRCm39)	D994G	possibly damaging	Het
Sorbs1	A	G	19: 40,381,904 (GRCm39)	S46P	probably damaging	Het
St8sia4	T	C	1: 95,519,433 (GRCm39)	T352A	possibly damaging	Het
Stab1	C	A	14: 30,863,287 (GRCm39)	R2133L	probably benign	Het
Stk11ip	T	C	1: 75,509,060 (GRCm39)	C730R	probably benign	Het
Tedc2	C	A	17: 24,435,292 (GRCm39)	E366*	probably null	Het
Tedc2	T	A	17: 24,435,291 (GRCm39)	E366V	probably damaging	Het
Tle4	A	T	19: 14,522,150 (GRCm39)		probably null	Het
Tmem200a	T	A	10: 25,869,970 (GRCm39)	N100Y	probably damaging	Het
Tnnt2	A	T	1: 135,768,597 (GRCm39)		probably null	Het
Ttn	T	A	2: 76,706,302 (GRCm39)		probably benign	Het
Ubac1	A	G	2: 25,904,974 (GRCm39)	V88A	probably benign	Het
Urgcp	T	C	11: 5,666,910 (GRCm39)	E476G	probably benign	Het
Vmn1r201	G	A	13: 22,659,425 (GRCm39)	R213H	probably benign	Het
Vmn2r84	C	T	10: 130,221,938 (GRCm39)	V761M	possibly damaging	Het
Vwde	A	T	6: 13,187,454 (GRCm39)	Y678N	probably damaging	Het
Wnk2	C	A	13: 49,206,200 (GRCm39)	E1865*	probably null	Het
Zc3h3	A	C	15: 75,628,780 (GRCm39)	M838R	possibly damaging	Het
Zfp959	T	A	17: 56,204,604 (GRCm39)	C211S	probably damaging	Het

Other mutations in Ly6g6d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01462:Ly6g6d	APN	17	35,293,226 (GRCm39)	missense	probably benign	0.04
R0668:Ly6g6d	UTSW	17	35,290,715 (GRCm39)	missense	probably damaging	0.98
R1278:Ly6g6d	UTSW	17	35,290,636 (GRCm39)	missense	probably benign	0.00
R4029:Ly6g6d	UTSW	17	35,290,636 (GRCm39)	missense	probably benign	0.00
R4960:Ly6g6d	UTSW	17	35,290,730 (GRCm39)	missense	probably benign	0.01
R5125:Ly6g6d	UTSW	17	35,293,418 (GRCm39)	missense	possibly damaging	0.83

Predicted Primers

PCR Primer
(F):5'- TTCAACAGTGGTGCCATCTG -3'
(R):5'- TGATGAACTCCCAGTTGGTCG -3'

Sequencing Primer
(F):5'- TCTGCCTAGAGCCAGATTGAACTG -3'
(R):5'- AACTCCCAGTTGGTCGGGATC -3'

Posted On

2014-06-30