Mutagenetix > Incidental Mutation

Incidental Mutation 'R1918:Jcad'

212782

Institutional Source

Beutler Lab

Gene Symbol

Jcad

Ensembl Gene

ENSMUSG00000033960

Gene Name

junctional cadherin 5 associated

Synonyms

9430020K01Rik

MMRRC Submission

039936-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1918 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

4634878-4682869 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 4674292 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Histidine at position 685 (Y685H)

Ref Sequence

ENSEMBL: ENSMUSP00000038613 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037029]

AlphaFold

Q5DTX6

Predicted Effect

probably damaging
Transcript: ENSMUST00000037029
AA Change: Y685H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000038613
Gene: ENSMUSG00000033960
AA Change: Y685H

Domain	Start	End	E-Value	Type
Pfam:JCAD	1	1309	N/A	PFAM

Meta Mutation Damage Score

0.1001

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.7%
20x: 93.5%

Validation Efficiency

97% (113/116)

Allele List at MGI

Other mutations in this stock

Total: 116 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930432E11Rik	T	G	7: 29,273,514 (GRCm39)		noncoding transcript	Het
A2m	T	C	6: 121,621,895 (GRCm39)	S314P	probably benign	Het
Abcc9	T	A	6: 142,643,408 (GRCm39)	I47F	probably damaging	Het
Abcd2	C	T	15: 91,075,684 (GRCm39)	R43H	probably benign	Het
Adgre5	A	G	8: 84,455,738 (GRCm39)	V190A	probably damaging	Het
Aen	C	T	7: 78,555,777 (GRCm39)	H242Y	possibly damaging	Het
Arfgef1	C	T	1: 10,270,103 (GRCm39)	A349T	probably benign	Het
Arhgap10	T	C	8: 77,985,708 (GRCm39)	I698V	probably benign	Het
Arpp21	C	T	9: 111,948,246 (GRCm39)		probably benign	Het
Atp10a	T	C	7: 58,477,683 (GRCm39)	I1294T	possibly damaging	Het
Atp13a2	T	C	4: 140,723,682 (GRCm39)	Y337H	possibly damaging	Het
Bsn	C	T	9: 107,984,772 (GRCm39)	G3094D	unknown	Het
Cadm2	G	A	16: 66,544,270 (GRCm39)		probably benign	Het
Cadps	T	C	14: 12,546,372 (GRCm38)	M495V	probably damaging	Het
Cass4	A	G	2: 172,269,259 (GRCm39)	H447R	possibly damaging	Het
Ccdc124	C	A	8: 71,321,588 (GRCm39)	R108L	probably benign	Het
Ccdc141	C	T	2: 76,845,047 (GRCm39)	R1340Q	probably benign	Het
Ccdc148	T	G	2: 58,872,911 (GRCm39)	R299S	probably damaging	Het
Cd300lg	A	G	11: 101,944,936 (GRCm39)	E382G	probably damaging	Het
Cd36	A	T	5: 18,002,034 (GRCm39)	C322*	probably null	Het
Celsr2	C	T	3: 108,305,966 (GRCm39)	G2046D	probably benign	Het
Clasrp	C	T	7: 19,319,188 (GRCm39)	W492*	probably null	Het
Cmtr1	T	C	17: 29,897,983 (GRCm39)	V154A	possibly damaging	Het
Ctnnb1	C	T	9: 120,780,100 (GRCm39)	P128S	possibly damaging	Het
Cyp11a1	A	G	9: 57,934,040 (GRCm39)	I496V	probably damaging	Het
Disp2	G	A	2: 118,622,408 (GRCm39)	V1047I	probably benign	Het
Dync2i1	A	C	12: 116,196,221 (GRCm39)	S509A	probably damaging	Het
Eps8l2	T	C	7: 140,941,637 (GRCm39)	V636A	probably damaging	Het
Fars2	T	C	13: 36,388,529 (GRCm39)	L6P	probably damaging	Het
Fem1al	A	G	11: 29,774,039 (GRCm39)	S473P	probably benign	Het
Fnip1	C	T	11: 54,371,510 (GRCm39)	T177I	probably damaging	Het
Fut8	G	T	12: 77,378,992 (GRCm39)	R31L	probably benign	Het
G6pd2	T	C	5: 61,967,664 (GRCm39)	F480L	probably benign	Het
Glipr1l2	T	A	10: 111,928,550 (GRCm39)	C148*	probably null	Het
Gm10142	G	A	10: 77,551,821 (GRCm39)	V61M	probably benign	Het
Gm5134	T	A	10: 75,812,180 (GRCm39)	M145K	possibly damaging	Het
Gnpda1	T	C	18: 38,466,243 (GRCm39)		probably null	Het
Gpc2	T	C	5: 138,276,641 (GRCm39)	T162A	probably benign	Het
Gtf2h4	G	A	17: 35,981,090 (GRCm39)	L246F	possibly damaging	Het
Hal	C	T	10: 93,332,469 (GRCm39)	P294S	probably damaging	Het
Hectd3	C	T	4: 116,857,540 (GRCm39)	A573V	possibly damaging	Het
Hephl1	T	A	9: 14,988,114 (GRCm39)	I665F	probably benign	Het
Herc1	T	C	9: 66,383,408 (GRCm39)		probably null	Het
Hif1an	A	G	19: 44,559,551 (GRCm39)		probably null	Het
Iho1	T	A	9: 108,290,184 (GRCm39)	H140L	probably benign	Het
Il12rb1	T	A	8: 71,266,324 (GRCm39)	M223K	probably benign	Het
Ilf3	C	T	9: 21,305,010 (GRCm39)	T201M	probably damaging	Het
Inpp5f	T	C	7: 128,265,693 (GRCm39)		probably benign	Het
Kcnj1	C	A	9: 32,308,034 (GRCm39)	Q153K	probably benign	Het
Kctd18	A	C	1: 57,998,379 (GRCm39)	H73Q	probably damaging	Het
Klhl36	T	A	8: 120,603,463 (GRCm39)	W573R	probably damaging	Het
Ldc1	A	T	4: 130,105,186 (GRCm39)	V328D	probably benign	Het
Lepr	A	G	4: 101,630,033 (GRCm39)	T583A	probably benign	Het
Ltbp4	G	A	7: 27,036,994 (GRCm39)		probably benign	Het
Mapt	A	T	11: 104,189,325 (GRCm39)	E114D	probably benign	Het
Mib1	T	A	18: 10,740,972 (GRCm39)		probably null	Het
Mthfd1	G	T	12: 76,361,750 (GRCm39)	A119S	probably damaging	Het
Mylk4	A	T	13: 32,908,836 (GRCm39)	D90E	probably benign	Het
Nceh1	T	G	3: 27,237,324 (GRCm39)	L33R	probably damaging	Het
Nfat5	T	C	8: 108,092,868 (GRCm39)	I91T	probably damaging	Het
Nxn	A	G	11: 76,152,498 (GRCm39)		probably benign	Het
Oasl1	G	A	5: 115,061,528 (GRCm39)	A20T	possibly damaging	Het
Or2m12	A	T	16: 19,105,052 (GRCm39)	M147K	probably benign	Het
Or4c127	T	C	2: 89,832,918 (GRCm39)	F56S	probably benign	Het
Or4d6	A	G	19: 12,086,871 (GRCm39)	V13A	probably benign	Het
Or5b97	A	G	19: 12,878,215 (GRCm39)	*310Q	probably null	Het
Or5t18	C	T	2: 86,637,171 (GRCm39)	M57I	probably damaging	Het
Or6c2	T	A	10: 129,362,918 (GRCm39)	V274D	probably damaging	Het
Pepd	T	C	7: 34,671,101 (GRCm39)	V215A	probably benign	Het
Pfkl	A	T	10: 77,837,260 (GRCm39)	N104K	probably damaging	Het
Phf24	T	C	4: 42,938,165 (GRCm39)		probably benign	Het
Pink1	T	C	4: 138,041,331 (GRCm39)	N530S	probably benign	Het
Pou3f2	T	C	4: 22,487,119 (GRCm39)	D338G	probably damaging	Het
Ppp1r13b	A	G	12: 111,801,244 (GRCm39)	V480A	probably damaging	Het
Ptgfrn	A	T	3: 100,963,623 (GRCm39)	I663N	probably benign	Het
Rad54b	A	C	4: 11,601,693 (GRCm39)	N416T	probably damaging	Het
Rasef	A	G	4: 73,662,351 (GRCm39)	S200P	possibly damaging	Het
Rbm33	T	A	5: 28,592,915 (GRCm39)	I605N	probably damaging	Het
Rps19bp1	T	C	15: 80,148,280 (GRCm39)	T31A	probably benign	Het
Ryr2	T	A	13: 11,571,584 (GRCm39)	T4885S	possibly damaging	Het
Serpinb6b	A	G	13: 33,162,223 (GRCm39)	I222V	probably benign	Het
Sik3	C	G	9: 46,132,387 (GRCm39)	H1276Q	probably benign	Het
Skor2	T	C	18: 76,947,051 (GRCm39)	S258P	unknown	Het
Slc22a29	C	T	19: 8,195,123 (GRCm39)		probably null	Het
Slc8a3	A	T	12: 81,361,618 (GRCm39)	F400L	probably damaging	Het
Slc9a8	T	C	2: 167,266,134 (GRCm39)	I37T	possibly damaging	Het
Smchd1	A	G	17: 71,714,232 (GRCm39)	I877T	possibly damaging	Het
Spag5	A	G	11: 78,195,002 (GRCm39)	N103S	probably benign	Het
Sptbn1	A	T	11: 30,092,414 (GRCm39)	F450L	probably damaging	Het
Strn4	T	A	7: 16,567,846 (GRCm39)	Y507N	probably damaging	Het
Stxbp5	C	A	10: 9,688,042 (GRCm39)	V420F	possibly damaging	Het
Syt17	G	T	7: 118,033,208 (GRCm39)	L267I	possibly damaging	Het
Tcstv4	T	C	13: 120,769,758 (GRCm39)	L26P	probably damaging	Het
Tdo2	T	A	3: 81,866,247 (GRCm39)	R339W	probably damaging	Het
Tex55	A	G	16: 38,648,450 (GRCm39)	Y220H	possibly damaging	Het
Timd5	A	G	11: 46,419,358 (GRCm39)	D58G	possibly damaging	Het
Ttn	A	G	2: 76,571,745 (GRCm39)	S26383P	probably damaging	Het
Ttn	G	T	2: 76,638,868 (GRCm39)	T13938K	probably damaging	Het
Tulp2	A	G	7: 45,167,365 (GRCm39)	N188D	possibly damaging	Het
Ube3c	C	T	5: 29,792,315 (GRCm39)	R37C	probably damaging	Het
Uggt2	G	T	14: 119,245,467 (GRCm39)		probably benign	Het
Umodl1	G	A	17: 31,203,017 (GRCm39)	V457M	probably damaging	Het
Usp17la	C	T	7: 104,509,953 (GRCm39)	T186I	probably benign	Het
Vmn1r226	T	C	17: 20,907,842 (GRCm39)	S25P	probably damaging	Het
Vmn1r235	T	A	17: 21,482,659 (GRCm39)	I328K	possibly damaging	Het
Vmn2r50	A	T	7: 9,781,610 (GRCm39)	S378R	probably benign	Het
Vwa2	C	T	19: 56,897,366 (GRCm39)	T557I	probably benign	Het
Vxn	T	C	1: 9,671,852 (GRCm39)	F15S	probably damaging	Het
Yes1	G	T	5: 32,842,079 (GRCm39)	Q534H	probably benign	Het
Zbtb25	A	T	12: 76,396,075 (GRCm39)	Y382*	probably null	Het
Zc3h3	G	A	15: 75,648,967 (GRCm39)	P722S	probably damaging	Het
Zfp36l2	T	C	17: 84,494,164 (GRCm39)	T158A	probably damaging	Het
Zfp536	T	C	7: 37,179,624 (GRCm39)	T994A	probably damaging	Het
Zfp592	C	T	7: 80,687,168 (GRCm39)	Q824*	probably null	Het
Zfp629	C	A	7: 127,211,172 (GRCm39)	K212N	probably damaging	Het
Zfp930	C	A	8: 69,681,357 (GRCm39)	Q350K	probably benign	Het

Other mutations in Jcad

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00650:Jcad	APN	18	4,675,692 (GRCm39)	missense	probably benign	0.14
IGL00672:Jcad	APN	18	4,674,835 (GRCm39)	missense	possibly damaging	0.77
IGL00782:Jcad	APN	18	4,675,073 (GRCm39)	missense	probably benign	0.00
IGL00825:Jcad	APN	18	4,673,516 (GRCm39)	missense	probably damaging	1.00
IGL01522:Jcad	APN	18	4,673,312 (GRCm39)	missense	probably damaging	0.97
IGL01796:Jcad	APN	18	4,672,855 (GRCm39)	nonsense	probably null
IGL01973:Jcad	APN	18	4,675,514 (GRCm39)	missense	probably benign	0.21
IGL02083:Jcad	APN	18	4,680,266 (GRCm39)	utr 3 prime	probably benign
IGL02625:Jcad	APN	18	4,674,422 (GRCm39)	missense	probably benign	0.03
IGL03002:Jcad	APN	18	4,675,153 (GRCm39)	missense	probably benign	0.00
IGL03325:Jcad	APN	18	4,673,902 (GRCm39)	missense	probably benign
R0304:Jcad	UTSW	18	4,673,325 (GRCm39)	missense	possibly damaging	0.75
R0487:Jcad	UTSW	18	4,673,243 (GRCm39)	missense	probably damaging	1.00
R0519:Jcad	UTSW	18	4,649,122 (GRCm39)	start gained	probably benign
R0664:Jcad	UTSW	18	4,676,063 (GRCm39)	missense	probably damaging	0.97
R1649:Jcad	UTSW	18	4,673,309 (GRCm39)	missense	probably damaging	1.00
R1710:Jcad	UTSW	18	4,674,511 (GRCm39)	missense	probably damaging	1.00
R1734:Jcad	UTSW	18	4,674,526 (GRCm39)	missense	probably damaging	1.00
R1823:Jcad	UTSW	18	4,675,780 (GRCm39)	missense	probably damaging	1.00
R1824:Jcad	UTSW	18	4,649,293 (GRCm39)	missense	probably benign
R1850:Jcad	UTSW	18	4,675,730 (GRCm39)	missense	possibly damaging	0.95
R1872:Jcad	UTSW	18	4,673,048 (GRCm39)	missense	probably benign
R1878:Jcad	UTSW	18	4,673,857 (GRCm39)	missense	possibly damaging	0.60
R1967:Jcad	UTSW	18	4,675,162 (GRCm39)	missense	probably benign	0.07
R2420:Jcad	UTSW	18	4,675,952 (GRCm39)	missense	probably damaging	1.00
R2504:Jcad	UTSW	18	4,674,026 (GRCm39)	missense	probably damaging	0.99
R2936:Jcad	UTSW	18	4,675,153 (GRCm39)	missense	probably benign	0.00
R4420:Jcad	UTSW	18	4,676,032 (GRCm39)	missense	probably benign	0.00
R4668:Jcad	UTSW	18	4,680,221 (GRCm39)	splice site	probably null
R4670:Jcad	UTSW	18	4,674,175 (GRCm39)	missense	probably benign	0.03
R4671:Jcad	UTSW	18	4,674,175 (GRCm39)	missense	probably benign	0.03
R4707:Jcad	UTSW	18	4,649,338 (GRCm39)	nonsense	probably null
R4720:Jcad	UTSW	18	4,674,055 (GRCm39)	missense	probably benign	0.03
R4815:Jcad	UTSW	18	4,675,223 (GRCm39)	missense	possibly damaging	0.94
R4906:Jcad	UTSW	18	4,673,762 (GRCm39)	missense	probably damaging	1.00
R5214:Jcad	UTSW	18	4,674,134 (GRCm39)	missense	probably damaging	1.00
R5439:Jcad	UTSW	18	4,675,790 (GRCm39)	missense	probably damaging	1.00
R5563:Jcad	UTSW	18	4,673,944 (GRCm39)	missense	possibly damaging	0.93
R5721:Jcad	UTSW	18	4,676,044 (GRCm39)	missense	possibly damaging	0.48
R5825:Jcad	UTSW	18	4,674,896 (GRCm39)	missense	probably benign	0.00
R5952:Jcad	UTSW	18	4,674,554 (GRCm39)	missense	probably damaging	1.00
R6661:Jcad	UTSW	18	4,675,256 (GRCm39)	missense	probably damaging	1.00
R6928:Jcad	UTSW	18	4,673,372 (GRCm39)	missense	probably benign	0.00
R7426:Jcad	UTSW	18	4,675,529 (GRCm39)	missense	probably benign	0.11
R7808:Jcad	UTSW	18	4,673,113 (GRCm39)	missense	probably damaging	1.00
R7943:Jcad	UTSW	18	4,672,700 (GRCm39)	missense	probably damaging	1.00
R8010:Jcad	UTSW	18	4,674,581 (GRCm39)	missense	probably benign
R8080:Jcad	UTSW	18	4,649,270 (GRCm39)	missense	probably benign	0.01
R8133:Jcad	UTSW	18	4,649,384 (GRCm39)	missense	probably benign	0.03
R8168:Jcad	UTSW	18	4,675,094 (GRCm39)	missense	probably benign	0.00
R8232:Jcad	UTSW	18	4,674,862 (GRCm39)	missense	probably benign	0.23
R8276:Jcad	UTSW	18	4,674,318 (GRCm39)	missense	probably damaging	1.00
R8408:Jcad	UTSW	18	4,649,402 (GRCm39)	missense	possibly damaging	0.55
R9173:Jcad	UTSW	18	4,675,820 (GRCm39)	missense	probably benign	0.42
R9415:Jcad	UTSW	18	4,673,912 (GRCm39)	missense	probably damaging	1.00
R9571:Jcad	UTSW	18	4,673,252 (GRCm39)	nonsense	probably null
T0722:Jcad	UTSW	18	4,675,531 (GRCm39)	missense	probably benign	0.25
X0017:Jcad	UTSW	18	4,676,044 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TATGTCTTCCACTGACCTGGAGC -3'
(R):5'- TGTTTCGAGACGGGCTAAGG -3'

Sequencing Primer
(F):5'- ACTGACCTGGAGCTGCAAG -3'
(R):5'- ACACTGGGCTTCTGATTTTGATCAC -3'

Posted On

2014-07-14