Mutagenetix > Incidental Mutation

Incidental Mutation 'R1940:Slit1'

213980

Institutional Source

Beutler Lab

Gene Symbol

Slit1

Ensembl Gene

ENSMUSG00000025020

Gene Name

slit guidance ligand 1

Synonyms

Slil1

MMRRC Submission

039958-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1940 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

41588696-41732104 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 41619215 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Isoleucine at position 762 (N762I)

Ref Sequence

ENSEMBL: ENSMUSP00000129034 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025993] [ENSMUST00000166496] [ENSMUST00000169141]

AlphaFold

Q80TR4

Predicted Effect

probably damaging
Transcript: ENSMUST00000025993
AA Change: N762I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000025993
Gene: ENSMUSG00000025020
AA Change: N762I

Domain	Start	End	E-Value	Type
signal peptide	1	32	N/A	INTRINSIC
LRRNT	33	65	5.68e-9	SMART
LRR	59	83	4.58e1	SMART
LRR	84	107	4.7e0	SMART
LRR_TYP	108	131	1.95e-3	SMART
LRR	133	155	6.05e0	SMART
LRR	157	179	3.98e1	SMART
LRR_TYP	180	203	3.44e-4	SMART
LRRCT	215	264	3.51e-6	SMART
LRRNT	281	313	3e-8	SMART
LRR	307	331	6.41e1	SMART
LRR_TYP	332	355	8.22e-2	SMART
LRR_TYP	356	379	9.08e-4	SMART
LRR	380	403	2.82e0	SMART
LRR_TYP	404	427	5.42e-2	SMART
LRRCT	439	488	5.78e-7	SMART
LRRNT	512	544	1.04e-7	SMART
LRR_TYP	564	587	3.39e-3	SMART
LRR	589	611	2.08e1	SMART
LRR_TYP	612	635	1.56e-2	SMART
LRR_TYP	636	659	4.11e-2	SMART
LRRCT	671	720	2.89e-7	SMART
LRRNT	733	765	4.87e-8	SMART
LRR	783	806	1.22e1	SMART
LRR_TYP	807	830	9.73e-4	SMART
LRR_TYP	831	854	9.58e-3	SMART
LRRCT	866	915	5.6e-14	SMART
EGF	928	962	5.08e-7	SMART
EGF	967	1003	1.74e-5	SMART
EGF_CA	1005	1041	1.05e-8	SMART
EGF	1046	1081	1.21e-4	SMART
EGF_CA	1083	1119	3.64e-8	SMART
FOLN	1086	1108	8.44e0	SMART
FOLN	1127	1149	1.4e0	SMART
EGF	1127	1160	1.78e-2	SMART
LamG	1183	1319	4.43e-38	SMART
EGF	1338	1371	6.76e-3	SMART
EGF	1377	1410	3.38e-3	SMART
FOLN	1418	1440	2.25e1	SMART
EGF	1418	1451	1.28e-3	SMART
CT	1462	1531	3.15e-4	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000166496
AA Change: N762I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000128381
Gene: ENSMUSG00000025020
AA Change: N762I

Domain	Start	End	E-Value	Type
signal peptide	1	32	N/A	INTRINSIC
LRRNT	33	65	5.68e-9	SMART
LRR	59	83	4.58e1	SMART
LRR	84	107	4.7e0	SMART
LRR_TYP	108	131	1.95e-3	SMART
LRR	133	155	6.05e0	SMART
LRR	157	179	3.98e1	SMART
LRR_TYP	180	203	3.44e-4	SMART
LRRCT	215	264	3.51e-6	SMART
LRRNT	281	313	3e-8	SMART
LRR	307	331	6.41e1	SMART
LRR_TYP	332	355	8.22e-2	SMART
LRR_TYP	356	379	9.08e-4	SMART
LRR	380	403	2.82e0	SMART
LRR_TYP	404	427	5.42e-2	SMART
LRRCT	439	488	5.78e-7	SMART
LRRNT	512	544	1.04e-7	SMART
LRR_TYP	564	587	3.39e-3	SMART
LRR	589	611	2.08e1	SMART
LRR_TYP	612	635	1.56e-2	SMART
LRR_TYP	636	659	4.11e-2	SMART
LRRCT	671	720	2.89e-7	SMART
LRRNT	733	765	4.87e-8	SMART
LRR	783	806	1.22e1	SMART
LRR_TYP	807	830	9.73e-4	SMART
LRR_TYP	831	854	9.58e-3	SMART
LRRCT	866	915	5.6e-14	SMART
EGF	928	962	5.08e-7	SMART
EGF	967	1003	1.74e-5	SMART
EGF_CA	1005	1041	1.05e-8	SMART
EGF	1046	1081	1.21e-4	SMART
EGF_CA	1083	1119	3.64e-8	SMART
FOLN	1086	1108	8.44e0	SMART
FOLN	1127	1149	1.4e0	SMART
EGF	1127	1160	1.78e-2	SMART
LamG	1183	1319	4.43e-38	SMART
EGF	1338	1371	6.76e-3	SMART
EGF	1377	1410	3.38e-3	SMART
low complexity region	1437	1458	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000169141
AA Change: N762I

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000129034
Gene: ENSMUSG00000025020
AA Change: N762I

Domain	Start	End	E-Value	Type
signal peptide	1	32	N/A	INTRINSIC
LRRNT	33	65	5.68e-9	SMART
LRR	59	83	4.58e1	SMART
LRR	84	107	4.7e0	SMART
LRR_TYP	108	131	1.95e-3	SMART
LRR	133	155	6.05e0	SMART
LRR	157	179	3.98e1	SMART
LRR_TYP	180	203	3.44e-4	SMART
LRRCT	215	264	3.51e-6	SMART
LRRNT	281	313	3e-8	SMART
LRR	307	331	6.41e1	SMART
LRR_TYP	332	355	8.22e-2	SMART
LRR_TYP	356	379	9.08e-4	SMART
LRR	380	403	2.82e0	SMART
LRR_TYP	404	427	5.42e-2	SMART
LRRCT	439	488	5.78e-7	SMART
LRRNT	512	544	1.04e-7	SMART
LRR_TYP	564	587	3.39e-3	SMART
LRR	589	611	2.08e1	SMART
LRR_TYP	612	635	1.56e-2	SMART
LRR_TYP	636	659	4.11e-2	SMART
LRRCT	671	720	2.89e-7	SMART
LRRNT	733	765	4.87e-8	SMART
LRR	783	806	1.22e1	SMART
LRR_TYP	807	830	9.73e-4	SMART
LRR_TYP	831	854	9.58e-3	SMART
LRRCT	866	915	5.6e-14	SMART
EGF	928	962	5.08e-7	SMART
EGF	967	1003	1.74e-5	SMART
EGF_CA	1005	1041	1.05e-8	SMART
EGF	1046	1081	1.21e-4	SMART
EGF_CA	1083	1119	3.64e-8	SMART
FOLN	1086	1108	8.44e0	SMART
FOLN	1127	1149	1.4e0	SMART
EGF	1127	1160	1.78e-2	SMART
LamG	1183	1319	4.43e-38	SMART
EGF	1338	1371	6.76e-3	SMART
EGF	1377	1410	3.38e-3	SMART
FOLN	1418	1440	2.25e1	SMART
EGF	1418	1451	1.28e-3	SMART

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.8%
20x: 93.7%

Validation Efficiency

98% (108/110)

MGI Phenotype

PHENOTYPE: Mice homozygous for a reporter allele exhibit normal interneuron numbers and morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 107 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca16	T	C	7: 120,032,832 (GRCm39)		probably benign	Het
Ace2	A	T	X: 162,939,524 (GRCm39)	M123L	possibly damaging	Het
Acvr1c	A	T	2: 58,173,517 (GRCm39)	N248K	probably damaging	Het
Adam24	A	T	8: 41,134,400 (GRCm39)	R623*	probably null	Het
Agbl2	T	A	2: 90,641,626 (GRCm39)	L752Q	probably damaging	Het
Ankrd26	A	T	6: 118,488,654 (GRCm39)	F1335Y	probably damaging	Het
Ankrd34a	A	G	3: 96,505,992 (GRCm39)	S399G	probably benign	Het
Aoc1l3	A	T	6: 48,967,007 (GRCm39)	K652*	probably null	Het
Ap3d1	G	A	10: 80,545,607 (GRCm39)	P1041S	probably benign	Het
Arid3b	A	T	9: 57,703,431 (GRCm39)	M466K	possibly damaging	Het
Arsj	T	C	3: 126,231,995 (GRCm39)	I247T	probably damaging	Het
AU016765	G	A	17: 64,826,873 (GRCm39)		noncoding transcript	Het
Azin2	C	T	4: 128,844,577 (GRCm39)		probably null	Het
Bcat2	T	C	7: 45,237,792 (GRCm39)	Y313H	possibly damaging	Het
Cables2	A	G	2: 179,901,873 (GRCm39)	V465A	probably damaging	Het
Ccdc60	G	A	5: 116,264,224 (GRCm39)	H517Y	probably damaging	Het
Cd55b	A	T	1: 130,345,843 (GRCm39)		probably null	Het
Cdc40	G	A	10: 40,759,067 (GRCm39)		probably benign	Het
Cdh20	G	A	1: 109,976,754 (GRCm39)	V140I	probably benign	Het
Cdhr18	A	T	14: 13,828,582 (GRCm38)	M726K	probably null	Het
Cfi	T	C	3: 129,652,477 (GRCm39)		probably benign	Het
Chit1	G	A	1: 134,073,156 (GRCm39)		probably null	Het
Chn1	A	G	2: 73,455,245 (GRCm39)	C39R	probably damaging	Het
Ciao1	A	G	2: 127,088,380 (GRCm39)	S148P	possibly damaging	Het
Clmn	G	A	12: 104,756,361 (GRCm39)	T163I	probably damaging	Het
Cngb1	C	A	8: 96,026,320 (GRCm39)	G154W	probably damaging	Het
Col19a1	A	T	1: 24,303,831 (GRCm39)	C1117*	probably null	Het
Cplane1	T	A	15: 8,263,336 (GRCm39)	S2496R	probably damaging	Het
Cyp2d10	T	A	15: 82,289,495 (GRCm39)	I206F	probably benign	Het
Ddrgk1	G	T	2: 130,505,480 (GRCm39)		probably benign	Het
Ddx18	A	T	1: 121,482,953 (GRCm39)	V611D	probably damaging	Het
Dnah8	A	T	17: 30,950,181 (GRCm39)	H2000L	probably damaging	Het
Duox1	T	C	2: 122,156,465 (GRCm39)	V464A	probably benign	Het
Dync2h1	A	G	9: 7,139,159 (GRCm39)		probably null	Het
Eif4enif1	A	G	11: 3,193,279 (GRCm39)	H857R	probably damaging	Het
Elmo2	A	G	2: 165,133,970 (GRCm39)		probably benign	Het
Fam171b	CCAGCAGCAGCAGCAGCAGCAGC	CCAGCAGCAGCAGCAGCAGC	2: 83,643,218 (GRCm39)		probably benign	Het
Glrx	A	G	13: 75,988,256 (GRCm39)	I57V	probably benign	Het
Golm1	A	T	13: 59,790,051 (GRCm39)		probably benign	Het
Grm3	G	A	5: 9,561,682 (GRCm39)	R723W	probably damaging	Het
Gsta3	G	A	1: 21,327,601 (GRCm39)	R45Q	probably benign	Het
Gtf3c3	A	C	1: 54,468,117 (GRCm39)		probably benign	Het
Hk3	C	T	13: 55,159,204 (GRCm39)	V451I	probably damaging	Het
Hoxa10	C	A	6: 52,211,350 (GRCm39)	G189C	possibly damaging	Het
Hs3st3b1	T	C	11: 63,780,569 (GRCm39)	D186G	probably benign	Het
Hscb	G	T	5: 110,983,926 (GRCm39)	H63N	probably benign	Het
Itpr3	A	G	17: 27,330,191 (GRCm39)	E1603G	probably damaging	Het
Ivl	T	A	3: 92,480,056 (GRCm39)	H3L	probably benign	Het
Klhl26	C	A	8: 70,904,911 (GRCm39)	R252L	probably damaging	Het
Krt31	T	A	11: 99,939,069 (GRCm39)	T251S	probably benign	Het
Lama5	T	C	2: 179,832,714 (GRCm39)	N1646S	probably benign	Het
Lhx3	T	C	2: 26,093,974 (GRCm39)	D83G	probably benign	Het
Lss	C	A	10: 76,381,296 (GRCm39)	N427K	possibly damaging	Het
Mettl24	G	A	10: 40,613,722 (GRCm39)	A154T	probably benign	Het
Mgat4a	A	T	1: 37,575,118 (GRCm39)		probably null	Het
Moxd2	C	T	6: 40,860,466 (GRCm39)	R326Q	probably damaging	Het
Mpdz	G	A	4: 81,279,680 (GRCm39)	A669V	probably benign	Het
Msra	G	A	14: 64,522,505 (GRCm39)		probably benign	Het
Muc13	A	T	16: 33,628,281 (GRCm39)	T344S	probably benign	Het
Myo3b	T	C	2: 70,088,419 (GRCm39)	I866T	probably benign	Het
Nbea	T	C	3: 55,860,521 (GRCm39)	S1852G	possibly damaging	Het
Ncf2	A	G	1: 152,709,815 (GRCm39)		probably benign	Het
Nfyc	C	A	4: 120,630,861 (GRCm39)		probably benign	Het
Nop2	T	C	6: 125,111,597 (GRCm39)	V110A	probably benign	Het
Nrg2	C	A	18: 36,329,897 (GRCm39)		probably benign	Het
Nrl	A	G	14: 55,759,892 (GRCm39)	Y12H	probably damaging	Het
Nrxn3	T	C	12: 89,227,151 (GRCm39)	V635A	probably damaging	Het
Or4d11	A	C	19: 12,013,275 (GRCm39)	V277G	probably benign	Het
Or6b2b	T	A	1: 92,419,457 (GRCm39)	T7S	probably benign	Het
Or8k41	T	A	2: 86,313,703 (GRCm39)	K128*	probably null	Het
Or9g8	T	A	2: 85,607,515 (GRCm39)	S196T	probably benign	Het
Papolg	A	T	11: 23,817,279 (GRCm39)	N639K	probably benign	Het
Paqr4	T	C	17: 23,956,638 (GRCm39)	I242V	probably damaging	Het
Pramel6	A	T	2: 87,339,076 (GRCm39)	K92M	probably damaging	Het
Prg4	T	C	1: 150,331,774 (GRCm39)	T300A	possibly damaging	Het
Ptprb	A	T	10: 116,155,515 (GRCm39)		probably benign	Het
Rab28	A	T	5: 41,783,133 (GRCm39)	S216T	probably benign	Het
Rrp1b	A	T	17: 32,275,819 (GRCm39)	R455S	possibly damaging	Het
Sash1	A	T	10: 8,605,696 (GRCm39)	M898K	probably benign	Het
Scn8a	C	T	15: 100,868,085 (GRCm39)	T310I	probably benign	Het
Secisbp2l	C	A	2: 125,582,259 (GRCm39)	D1066Y	probably damaging	Het
Sipa1l2	A	G	8: 126,206,887 (GRCm39)		probably benign	Het
Slc12a1	A	G	2: 125,036,113 (GRCm39)	T662A	probably benign	Het
Slc12a4	T	C	8: 106,672,669 (GRCm39)	I749V	probably benign	Het
Slc22a27	A	G	19: 7,887,092 (GRCm39)	S266P	probably damaging	Het
Slc25a14	G	A	X: 47,740,840 (GRCm39)	V210I	probably benign	Het
Spata31d1b	C	A	13: 59,865,835 (GRCm39)	D994E	possibly damaging	Het
Sphk1	A	G	11: 116,426,676 (GRCm39)	I204V	probably benign	Het
Srsf6	C	T	2: 162,776,403 (GRCm39)		probably benign	Het
Tet2	T	C	3: 133,194,399 (GRCm39)	T12A	possibly damaging	Het
Tgfbi	A	T	13: 56,762,127 (GRCm39)	Q70L	possibly damaging	Het
Tlr9	T	C	9: 106,101,846 (GRCm39)	L379P	probably damaging	Het
Tnrc6c	A	G	11: 117,646,849 (GRCm39)	D1450G	possibly damaging	Het
Tra2b	A	G	16: 22,073,795 (GRCm39)		probably benign	Het
Trit1	T	C	4: 122,948,033 (GRCm39)	I451T	probably benign	Het
Trnau1ap	A	G	4: 132,049,114 (GRCm39)	Y30H	probably damaging	Het
Ttc34	G	A	4: 154,950,139 (GRCm39)	A1031T	possibly damaging	Het
Ubiad1	A	G	4: 148,528,468 (GRCm39)	L147P	probably damaging	Het
Ush2a	A	G	1: 188,683,758 (GRCm39)	D4979G	probably null	Het
Usp50	C	T	2: 126,619,943 (GRCm39)	R123Q	probably benign	Het
Vmn2r117	A	T	17: 23,696,454 (GRCm39)	Y318N	probably damaging	Het
Whamm	C	T	7: 81,228,047 (GRCm39)	T304I	probably null	Het
Wipf2	C	T	11: 98,783,236 (GRCm39)	R221*	probably null	Het
Ythdf3	A	G	3: 16,259,256 (GRCm39)	N468D	possibly damaging	Het
Zbtb17	T	C	4: 141,192,859 (GRCm39)	I486T	possibly damaging	Het
Zfp3	T	C	11: 70,662,202 (GRCm39)	S54P	probably benign	Het
Zscan10	A	T	17: 23,828,826 (GRCm39)	H379L	probably damaging	Het

Other mutations in Slit1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00162:Slit1	APN	19	41,639,274 (GRCm39)	missense	probably damaging	1.00
IGL00515:Slit1	APN	19	41,612,940 (GRCm39)	missense	probably damaging	0.97
IGL00909:Slit1	APN	19	41,590,694 (GRCm39)	missense	possibly damaging	0.89
IGL00953:Slit1	APN	19	41,590,739 (GRCm39)	missense	probably damaging	1.00
IGL01116:Slit1	APN	19	41,594,824 (GRCm39)	missense	possibly damaging	0.93
IGL01457:Slit1	APN	19	41,599,483 (GRCm39)	missense	probably damaging	1.00
IGL01688:Slit1	APN	19	41,717,545 (GRCm39)	missense	probably damaging	1.00
IGL01720:Slit1	APN	19	41,622,653 (GRCm39)	missense	probably benign	0.01
IGL01925:Slit1	APN	19	41,596,817 (GRCm39)	missense	probably damaging	0.98
IGL02008:Slit1	APN	19	41,634,579 (GRCm39)	missense	probably damaging	0.99
IGL02312:Slit1	APN	19	41,590,119 (GRCm39)	missense	possibly damaging	0.66
IGL02398:Slit1	APN	19	41,590,676 (GRCm39)	missense	probably damaging	1.00
IGL02542:Slit1	APN	19	41,615,687 (GRCm39)	missense	probably damaging	1.00
IGL02559:Slit1	APN	19	41,709,524 (GRCm39)	missense	probably benign	0.01
IGL02609:Slit1	APN	19	41,590,743 (GRCm39)	missense	probably damaging	0.99
IGL02623:Slit1	APN	19	41,640,122 (GRCm39)	missense	probably damaging	0.98
IGL02729:Slit1	APN	19	41,591,773 (GRCm39)	missense	probably damaging	1.00
IGL03230:Slit1	APN	19	41,717,524 (GRCm39)	missense	probably damaging	1.00
IGL03387:Slit1	APN	19	41,591,881 (GRCm39)	missense	possibly damaging	0.57
PIT4576001:Slit1	UTSW	19	41,612,988 (GRCm39)	missense	possibly damaging	0.52
R0366:Slit1	UTSW	19	41,599,470 (GRCm39)	missense	probably damaging	1.00
R0432:Slit1	UTSW	19	41,731,732 (GRCm39)	missense	probably damaging	0.98
R0496:Slit1	UTSW	19	41,596,750 (GRCm39)	splice site	probably benign
R0722:Slit1	UTSW	19	41,596,874 (GRCm39)	missense	probably damaging	1.00
R1468:Slit1	UTSW	19	41,596,823 (GRCm39)	missense	probably damaging	1.00
R1468:Slit1	UTSW	19	41,596,823 (GRCm39)	missense	probably damaging	1.00
R1488:Slit1	UTSW	19	41,596,824 (GRCm39)	missense	probably damaging	1.00
R1615:Slit1	UTSW	19	41,639,110 (GRCm39)	splice site	probably benign
R1694:Slit1	UTSW	19	41,626,031 (GRCm39)	missense	possibly damaging	0.69
R1762:Slit1	UTSW	19	41,591,774 (GRCm39)	missense	probably damaging	1.00
R1842:Slit1	UTSW	19	41,709,477 (GRCm39)	critical splice donor site	probably null
R1844:Slit1	UTSW	19	41,614,012 (GRCm39)	missense	probably damaging	1.00
R2087:Slit1	UTSW	19	41,625,922 (GRCm39)	missense	probably benign	0.00
R2094:Slit1	UTSW	19	41,594,819 (GRCm39)	missense	probably damaging	0.99
R2095:Slit1	UTSW	19	41,594,819 (GRCm39)	missense	probably damaging	0.99
R2104:Slit1	UTSW	19	41,590,686 (GRCm39)	missense	possibly damaging	0.69
R2305:Slit1	UTSW	19	41,599,455 (GRCm39)	missense	probably benign	0.03
R2972:Slit1	UTSW	19	41,599,455 (GRCm39)	missense	probably benign	0.03
R2973:Slit1	UTSW	19	41,599,455 (GRCm39)	missense	probably benign	0.03
R2974:Slit1	UTSW	19	41,599,455 (GRCm39)	missense	probably benign	0.03
R3159:Slit1	UTSW	19	41,592,812 (GRCm39)	missense	probably benign
R3752:Slit1	UTSW	19	41,635,406 (GRCm39)	critical splice donor site	probably null
R4095:Slit1	UTSW	19	41,596,925 (GRCm39)	intron	probably benign
R4282:Slit1	UTSW	19	41,602,856 (GRCm39)	missense	probably benign
R4417:Slit1	UTSW	19	41,602,908 (GRCm39)	missense	probably damaging	1.00
R4607:Slit1	UTSW	19	41,605,232 (GRCm39)	missense	probably benign	0.10
R4729:Slit1	UTSW	19	41,635,459 (GRCm39)	missense	probably damaging	1.00
R4756:Slit1	UTSW	19	41,637,452 (GRCm39)	missense	probably damaging	1.00
R4764:Slit1	UTSW	19	41,709,483 (GRCm39)	nonsense	probably null
R4849:Slit1	UTSW	19	41,637,983 (GRCm39)	missense	probably benign	0.17
R4874:Slit1	UTSW	19	41,717,493 (GRCm39)	critical splice donor site	probably null
R5581:Slit1	UTSW	19	41,605,102 (GRCm39)	critical splice donor site	probably null
R5699:Slit1	UTSW	19	41,613,959 (GRCm39)	critical splice donor site	probably null
R5888:Slit1	UTSW	19	41,731,735 (GRCm39)	missense	probably damaging	1.00
R5906:Slit1	UTSW	19	41,594,813 (GRCm39)	missense	probably damaging	1.00
R6176:Slit1	UTSW	19	41,626,034 (GRCm39)	missense	probably damaging	1.00
R6277:Slit1	UTSW	19	41,588,948 (GRCm39)	missense	possibly damaging	0.81
R6702:Slit1	UTSW	19	41,603,309 (GRCm39)	missense	possibly damaging	0.95
R6860:Slit1	UTSW	19	41,605,154 (GRCm39)	missense	probably benign	0.10
R7015:Slit1	UTSW	19	41,618,325 (GRCm39)	nonsense	probably null
R7172:Slit1	UTSW	19	41,623,105 (GRCm39)	missense	probably damaging	1.00
R7512:Slit1	UTSW	19	41,589,074 (GRCm39)	missense	probably damaging	1.00
R7568:Slit1	UTSW	19	41,590,074 (GRCm39)	missense	probably damaging	1.00
R7614:Slit1	UTSW	19	41,622,639 (GRCm39)	missense	probably damaging	1.00
R7650:Slit1	UTSW	19	41,618,363 (GRCm39)	missense	probably damaging	1.00
R7687:Slit1	UTSW	19	41,639,128 (GRCm39)	missense	probably benign	0.03
R7732:Slit1	UTSW	19	41,592,847 (GRCm39)	missense	probably benign	0.01
R7947:Slit1	UTSW	19	41,599,248 (GRCm39)	missense	probably benign
R7947:Slit1	UTSW	19	41,599,247 (GRCm39)	missense	probably damaging	1.00
R8171:Slit1	UTSW	19	41,715,512 (GRCm39)	missense	probably damaging	0.97
R8217:Slit1	UTSW	19	41,612,959 (GRCm39)	missense	possibly damaging	0.60
R8355:Slit1	UTSW	19	41,634,473 (GRCm39)	missense	probably damaging	1.00
R9025:Slit1	UTSW	19	41,612,968 (GRCm39)	missense	probably benign	0.01
R9124:Slit1	UTSW	19	41,594,951 (GRCm39)	missense	probably benign	0.02
R9288:Slit1	UTSW	19	41,613,144 (GRCm39)	intron	probably benign
R9343:Slit1	UTSW	19	41,615,737 (GRCm39)	missense	probably damaging	1.00
R9435:Slit1	UTSW	19	41,591,764 (GRCm39)	critical splice donor site	probably null
R9563:Slit1	UTSW	19	41,596,874 (GRCm39)	missense	probably damaging	1.00
R9564:Slit1	UTSW	19	41,591,861 (GRCm39)	missense	probably benign	0.16
R9595:Slit1	UTSW	19	41,637,851 (GRCm39)	missense	probably damaging	1.00
R9667:Slit1	UTSW	19	41,731,832 (GRCm39)	nonsense	probably null
X0023:Slit1	UTSW	19	41,590,079 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- GCAGAGTCTTTACCATGACTTTGTC -3'
(R):5'- AAGGAAACCATGTCCCTGACTG -3'

Sequencing Primer
(F):5'- TGTGTATCAGACAGATAGCCTGC -3'
(R):5'- ACTGACCAGCGCGTCATTC -3'

Posted On

2014-07-14