Mutagenetix > Incidental Mutation

Incidental Mutation 'R1913:Cul7'

214631

Institutional Source

Beutler Lab

Gene Symbol

Cul7

Ensembl Gene

ENSMUSG00000038545

Gene Name

cullin 7

Synonyms

p185, 2510004L20Rik, C230011P08Rik, p193

MMRRC Submission

039931-MU

Accession Numbers

Is this an essential gene?

Essential (E-score: 1.000) question?

Stock #

R1913 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

46650337-46664364 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 46663190 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Histidine at position 1467 (L1467H)

Ref Sequence

ENSEMBL: ENSMUSP00000049128 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024766] [ENSMUST00000043464] [ENSMUST00000133393] [ENSMUST00000145567]

AlphaFold

Q8VE73

Predicted Effect

probably benign
Transcript: ENSMUST00000024766

SMART Domains

Protein: ENSMUSP00000024766
Gene: ENSMUSG00000023971

Domain	Start	End	E-Value	Type
Pfam:DUF947	55	219	7.6e-53	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000043464
AA Change: L1467H

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000049128
Gene: ENSMUSG00000038545
AA Change: L1467H

Domain	Start	End	E-Value	Type
low complexity region	46	54	N/A	INTRINSIC
low complexity region	218	229	N/A	INTRINSIC
low complexity region	315	324	N/A	INTRINSIC
Pfam:Cul7	349	423	5.7e-34	PFAM
low complexity region	462	476	N/A	INTRINSIC
low complexity region	603	618	N/A	INTRINSIC
low complexity region	635	648	N/A	INTRINSIC
APC10	811	973	9.35e-49	SMART
low complexity region	983	993	N/A	INTRINSIC
low complexity region	1063	1074	N/A	INTRINSIC
low complexity region	1301	1318	N/A	INTRINSIC
low complexity region	1335	1370	N/A	INTRINSIC
Blast:Cullin_Nedd8	1550	1633	1e-41	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000125949

Predicted Effect

probably benign
Transcript: ENSMUST00000133393

SMART Domains

Protein: ENSMUSP00000119393
Gene: ENSMUSG00000038545

Domain	Start	End	E-Value	Type
low complexity region	17	26	N/A	INTRINSIC
Pfam:Cul7	51	126	8e-34	PFAM
low complexity region	164	178	N/A	INTRINSIC
low complexity region	305	320	N/A	INTRINSIC
low complexity region	337	350	N/A	INTRINSIC
SCOP:d1gqpa_	487	568	1e-13	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000145567

SMART Domains

Protein: ENSMUSP00000116133
Gene: ENSMUSG00000038545

Domain	Start	End	E-Value	Type
low complexity region	46	54	N/A	INTRINSIC
SCOP:d1jdha_	63	222	2e-4	SMART
low complexity region	315	324	N/A	INTRINSIC
Pfam:Cul7	349	424	9.5e-34	PFAM
low complexity region	462	476	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000181301

Meta Mutation Damage Score

0.4846

Coding Region Coverage

1x: 97.5%
3x: 97.0%
10x: 95.6%
20x: 93.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a component of an E3 ubiquitin-protein ligase complex. The encoded protein interacts with TP53, CUL9, and FBXW8 proteins. Defects in this gene are a cause of 3M syndrome type 1 (3M1). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2009]
PHENOTYPE: During late gestation, homozygous null fetuses display reduced growth associated with abnormal placental development and hemorrhaging due to vascular defects. Mutant mice are born but die shortly after birth, succumbing to respiratory distress. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 105 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9330182L06Rik	T	G	5: 9,266,275	L2R	probably damaging	Het
Abca16	A	T	7: 120,541,240	I1588F	probably benign	Het
Abcc2	A	T	19: 43,807,244	T480S	probably benign	Het
Acnat1	A	G	4: 49,447,498	I361T	probably damaging	Het
Adamts10	A	T	17: 33,549,555	H869L	probably benign	Het
AF366264	T	A	8: 13,837,143	Q316L	probably benign	Het
Agpat5	T	C	8: 18,879,613	C253R	probably benign	Het
Agtrap	T	A	4: 148,083,977	H15L	probably damaging	Het
Ahnak	T	A	19: 9,007,922	V2190E	probably damaging	Het
Alx4	A	G	2: 93,675,387	E278G	probably damaging	Het
Amz2	T	C	11: 109,428,871	S28P	probably damaging	Het
Atr	T	A	9: 95,866,733	Y444N	probably benign	Het
Brdt	T	C	5: 107,348,613	I197T	probably benign	Het
Ccser1	G	T	6: 62,379,894	S772I	probably damaging	Het
Cdh16	T	C	8: 104,616,468	H657R	probably benign	Het
Ceacam5	A	T	7: 17,759,577	K842*	probably null	Het
Cep120	G	A	18: 53,723,286	T353I	probably benign	Het
Chrnb1	T	C	11: 69,793,584	N164S	possibly damaging	Het
Cse1l	T	C	2: 166,922,191	F123L	probably damaging	Het
Dcx	G	C	X: 143,923,103	L231V	probably damaging	Het
Dnah12	T	C	14: 26,792,264		probably null	Het
Dnah2	A	T	11: 69,464,930	M2227K	probably damaging	Het
Dnajc30	G	A	5: 135,064,332	A28T	probably benign	Het
Dnm1l	T	C	16: 16,329,966	T306A	probably benign	Het
Enpp3	C	A	10: 24,776,771	E763*	probably null	Het
Esyt3	T	C	9: 99,320,311	S516G	probably benign	Het
Exoc3	T	C	13: 74,182,316	Q498R	probably damaging	Het
Fbn2	T	A	18: 58,061,742	N1449I	probably damaging	Het
Fgb	T	C	3: 83,044,980	D194G	probably benign	Het
Fgd3	T	C	13: 49,263,848	D713G	possibly damaging	Het
Foxb1	T	A	9: 69,760,101	Y49F	possibly damaging	Het
Fpr3	A	G	17: 17,971,408	I314V	probably damaging	Het
Gfod1	A	T	13: 43,303,445	I18N	probably damaging	Het
Gm11492	T	C	11: 87,567,012	S71P	probably benign	Het
Gm5407	T	C	16: 49,296,920		noncoding transcript	Het
Gm7534	A	G	4: 134,192,675		probably null	Het
Gpr89	A	G	3: 96,875,633	F334L	possibly damaging	Het
Gucy2d	G	T	7: 98,443,847	V144F	probably benign	Het
H2-Bl	T	A	17: 36,081,016	K237M	probably damaging	Het
H2-M10.5	C	A	17: 36,774,768	P273H	probably damaging	Het
Hcn2	A	G	10: 79,730,943	M485V	probably benign	Het
Helz2	G	T	2: 181,233,750	S1650R	probably damaging	Het
Ifnar2	T	C	16: 91,404,170	V433A	probably benign	Het
Igsf21	T	A	4: 140,107,312	Y83F	probably benign	Het
Kcnk18	A	G	19: 59,235,058	I212V	possibly damaging	Het
Kcns2	T	C	15: 34,839,709	I406T	probably damaging	Het
Krt42	C	T	11: 100,267,249	V166M	possibly damaging	Het
Lama3	T	C	18: 12,495,279	M1476T	probably benign	Het
Lcor	A	G	19: 41,558,474	R166G	probably benign	Het
Mapt	C	T	11: 104,328,075	P354L	probably damaging	Het
Mep1b	A	T	18: 21,093,229	I383F	probably benign	Het
Mpzl1	C	A	1: 165,601,805	C222F	probably benign	Het
Mug2	T	C	6: 122,070,870	L780P	probably damaging	Het
Naip2	C	T	13: 100,152,157		probably null	Het
Ndufab1	T	C	7: 122,096,691	D41G	probably benign	Het
Ntn1	A	G	11: 68,213,185	C546R	probably damaging	Het
Olfr448	T	A	6: 42,896,753	F101I	probably damaging	Het
Pakap	A	G	4: 57,892,963	E880G	probably damaging	Het
Pde6b	A	G	5: 108,427,190	E639G	probably benign	Het
Phf10	T	C	17: 14,956,809	T83A	probably benign	Het
Phkb	T	A	8: 85,901,920	I186N	possibly damaging	Het
Pkhd1	A	G	1: 20,566,756		probably null	Het
Plxnd1	C	A	6: 115,978,017	A595S	possibly damaging	Het
Ppara	T	A	15: 85,801,099	H416Q	probably damaging	Het
Prodh	T	A	16: 18,081,027	D188V	probably damaging	Het
Psmd14	A	T	2: 61,785,456	K223M	possibly damaging	Het
Ptpn5	A	G	7: 47,078,868	M528T	possibly damaging	Het
Rassf9	G	A	10: 102,544,939	E59K	probably benign	Het
Rnf2	A	T	1: 151,476,185	L140H	probably damaging	Het
Scai	A	G	2: 39,080,081	F557S	probably damaging	Het
Sdk2	A	G	11: 113,856,726	S653P	possibly damaging	Het
Sec24c	A	G	14: 20,689,111	D534G	probably benign	Het
Serinc1	A	G	10: 57,519,465	V375A	probably benign	Het
Serpinb9f	C	T	13: 33,325,846	A7V	probably damaging	Het
Smco1	T	C	16: 32,273,882	S124P	probably damaging	Het
Smim23	C	A	11: 32,824,441	C26F	possibly damaging	Het
Sppl2c	T	A	11: 104,187,889	M505K	probably benign	Het
Sprr1b	C	A	3: 92,437,468	V34F	possibly damaging	Het
Sun1	G	A	5: 139,235,732		probably null	Het
Supt16	A	G	14: 52,178,135	L381P	possibly damaging	Het
Syne2	A	G	12: 75,899,246	D364G	possibly damaging	Het
Tax1bp1	G	T	6: 52,765,952	V775F	probably damaging	Het
Tial1	T	A	7: 128,444,659	I231F	probably damaging	Het
Tiam1	C	A	16: 89,798,694	V1300L	probably damaging	Het
Tmem132e	A	G	11: 82,443,417	T585A	probably damaging	Het
Tnni3k	C	T	3: 154,979,199	A165T	probably benign	Het
Tomm40	A	T	7: 19,710,961	I165N	probably damaging	Het
Tomt	T	C	7: 101,901,247	E104G	probably damaging	Het
Topaz1	T	C	9: 122,767,013	S950P	possibly damaging	Het
Traf3ip2	C	G	10: 39,625,940	P28R	probably benign	Het
Trim24	C	T	6: 37,957,815	P822S	probably damaging	Het
Upf3a	T	G	8: 13,792,108	Y175D	probably damaging	Het
Vars2	G	A	17: 35,666,922	P69S	probably benign	Het
Veph1	T	C	3: 66,244,555	Y151C	probably damaging	Het
Vmn2r11	T	A	5: 109,054,788	D141V	probably benign	Het
Vwa5b1	G	A	4: 138,592,020	Q442*	probably null	Het
Wdr17	T	A	8: 54,687,726	D197V	probably damaging	Het
Wdr70	G	T	15: 7,884,410	T586N	possibly damaging	Het
Wfdc18	G	A	11: 83,709,928	G52R	probably benign	Het
Zc3h6	T	C	2: 129,016,620	I857T	probably damaging	Het
Zfp318	TGAAGAAGAAGAAGAAGAAGAAGAAGAAG	TGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG	17: 46,412,514		probably benign	Het
Zfp318	GAAGAA	GAAGAACAAGAA	17: 46,412,524		probably benign	Het
Zfp647	C	T	15: 76,911,951	V170I	probably benign	Het
Zfp871	T	C	17: 32,775,917	N76D	possibly damaging	Het
Zwilch	A	G	9: 64,160,952	Y194H	probably damaging	Het

Other mutations in Cul7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00557:Cul7	APN	17	46652508	missense	probably damaging	1.00
IGL01288:Cul7	APN	17	46657807	splice site	probably benign
IGL01669:Cul7	APN	17	46658715	missense	possibly damaging	0.94
P0019:Cul7	UTSW	17	46660247	splice site	probably benign
PIT4453001:Cul7	UTSW	17	46651820	missense	probably damaging	0.99
R0083:Cul7	UTSW	17	46655556	missense	probably benign	0.00
R0121:Cul7	UTSW	17	46663373	missense	probably damaging	1.00
R0157:Cul7	UTSW	17	46653835	missense	possibly damaging	0.93
R0266:Cul7	UTSW	17	46654595	missense	probably benign	0.00
R0358:Cul7	UTSW	17	46663744	critical splice donor site	probably null
R0544:Cul7	UTSW	17	46663544	missense	possibly damaging	0.94
R0565:Cul7	UTSW	17	46652003	missense	probably damaging	0.98
R0677:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R0696:Cul7	UTSW	17	46659608	missense	probably damaging	1.00
R0702:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R0735:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R0893:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R0900:Cul7	UTSW	17	46658337	missense	probably benign	0.36
R0975:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R0976:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1014:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1016:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1104:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1162:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1378:Cul7	UTSW	17	46662126	missense	probably damaging	0.99
R1479:Cul7	UTSW	17	46651747	missense	probably damaging	1.00
R1498:Cul7	UTSW	17	46655710	missense	probably benign	0.01
R1521:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1542:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1545:Cul7	UTSW	17	46651553	missense	probably damaging	1.00
R1598:Cul7	UTSW	17	46663091	missense	probably benign	0.10
R1600:Cul7	UTSW	17	46651822	nonsense	probably null
R1618:Cul7	UTSW	17	46663190	missense	probably damaging	0.99
R1752:Cul7	UTSW	17	46653167	missense	probably benign	0.10
R1881:Cul7	UTSW	17	46651962	missense	probably damaging	1.00
R1901:Cul7	UTSW	17	46655740	missense	probably damaging	1.00
R1902:Cul7	UTSW	17	46655740	missense	probably damaging	1.00
R2213:Cul7	UTSW	17	46651472	missense	probably damaging	0.99
R2370:Cul7	UTSW	17	46661641	missense	probably damaging	1.00
R2929:Cul7	UTSW	17	46651600	missense	probably benign	0.00
R2930:Cul7	UTSW	17	46651600	missense	probably benign	0.00
R2990:Cul7	UTSW	17	46651600	missense	probably benign	0.00
R2992:Cul7	UTSW	17	46651600	missense	probably benign	0.00
R4201:Cul7	UTSW	17	46661312	missense	probably damaging	1.00
R4792:Cul7	UTSW	17	46657050	nonsense	probably null
R4971:Cul7	UTSW	17	46659119	missense	probably benign	0.00
R5014:Cul7	UTSW	17	46655942	makesense	probably null
R5384:Cul7	UTSW	17	46654477	missense	probably benign	0.44
R5957:Cul7	UTSW	17	46657757	missense	probably damaging	1.00
R6128:Cul7	UTSW	17	46651662	missense	probably damaging	1.00
R6294:Cul7	UTSW	17	46663148	missense	probably benign
R6812:Cul7	UTSW	17	46661409	missense	probably benign	0.00
R7073:Cul7	UTSW	17	46658731	missense	probably damaging	1.00
R7112:Cul7	UTSW	17	46651698	missense	probably damaging	1.00
R7246:Cul7	UTSW	17	46662067	missense	probably benign	0.04
R7361:Cul7	UTSW	17	46657007	missense	probably damaging	1.00
R7567:Cul7	UTSW	17	46654595	missense	probably benign	0.00
R7682:Cul7	UTSW	17	46655595	missense	probably benign
R7689:Cul7	UTSW	17	46652821	nonsense	probably null
R7797:Cul7	UTSW	17	46658642	missense	possibly damaging	0.65
R7897:Cul7	UTSW	17	46658005	missense	probably benign
R8783:Cul7	UTSW	17	46655649	missense	probably benign
R9047:Cul7	UTSW	17	46654522	missense	probably benign	0.01
R9167:Cul7	UTSW	17	46655697	missense	probably benign	0.14
R9614:Cul7	UTSW	17	46664286	missense	probably damaging	1.00
Z1177:Cul7	UTSW	17	46652805	frame shift	probably null
Z1177:Cul7	UTSW	17	46658738	missense	probably damaging	0.99
Z1177:Cul7	UTSW	17	46659569	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- GGCAAAGCTTGACCAACAG -3'
(R):5'- ATGGCCCTGTGAAGCACATC -3'

Sequencing Primer
(F):5'- GCTTGACCAACAGAGCATGC -3'
(R):5'- AGAGTTTAGATCCTCGGGG -3'

Posted On

2014-07-14