Incidental Mutation 'R1928:Pabpc1l'
ID 215017
Institutional Source Beutler Lab
Gene Symbol Pabpc1l
Ensembl Gene ENSMUSG00000054582
Gene Name poly(A) binding protein, cytoplasmic 1-like
Synonyms 1810053B01Rik, ePAB
MMRRC Submission 039946-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R1928 (G1)
Quality Score 225
Status Validated
Chromosome 2
Chromosomal Location 163867370-163892458 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 163874174 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Asparagine at position 193 (I193N)
Ref Sequence ENSEMBL: ENSMUSP00000096701 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000067715]
AlphaFold A2A5N3
Predicted Effect possibly damaging
Transcript: ENSMUST00000067715
AA Change: I193N

PolyPhen 2 Score 0.698 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000096701
Gene: ENSMUSG00000054582
AA Change: I193N

DomainStartEndE-ValueType
RRM 12 85 2.3e-23 SMART
RRM 100 171 1.84e-22 SMART
RRM 192 264 2.31e-28 SMART
RRM 295 366 7.07e-24 SMART
SCOP:d1g9la_ 425 478 1e-6 SMART
PolyA 535 598 8.33e-27 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000141671
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156087
Meta Mutation Damage Score 0.8029 question?
Coding Region Coverage
  • 1x: 97.5%
  • 3x: 96.9%
  • 10x: 95.4%
  • 20x: 92.6%
Validation Efficiency 98% (120/123)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired oocyte maturation and female infertility. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 117 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A630073D07Rik T G 6: 132,603,564 (GRCm39) Q64P unknown Het
Adgrv1 A T 13: 81,668,905 (GRCm39) F1830L probably benign Het
Anks3 C T 16: 4,763,918 (GRCm39) probably null Het
Aqp12 G A 1: 92,934,332 (GRCm39) D70N probably damaging Het
B4galnt4 C T 7: 140,648,061 (GRCm39) R526* probably null Het
Best2 A G 8: 85,737,882 (GRCm39) F171S probably benign Het
C2cd5 A T 6: 142,958,956 (GRCm39) V965D probably damaging Het
Cd33 T C 7: 43,179,303 (GRCm39) E282G probably benign Het
Cep95 C T 11: 106,681,554 (GRCm39) probably benign Het
Chd6 A T 2: 160,809,920 (GRCm39) probably benign Het
Clec4d A T 6: 123,244,120 (GRCm39) probably null Het
Cntd1 C T 11: 101,174,678 (GRCm39) S128L probably damaging Het
Col19a1 T C 1: 24,490,835 (GRCm39) probably benign Het
Ctrb1 C A 8: 112,415,324 (GRCm39) V117L probably benign Het
Dclk1 T C 3: 55,154,942 (GRCm39) V124A possibly damaging Het
Dcp2 T C 18: 44,538,638 (GRCm39) probably null Het
Dctn1 C A 6: 83,176,166 (GRCm39) probably benign Het
Dennd11 A G 6: 40,388,648 (GRCm39) F238L probably benign Het
Ephb3 T A 16: 21,041,045 (GRCm39) M701K possibly damaging Het
Ero1b A G 13: 12,616,648 (GRCm39) E359G probably damaging Het
Exosc8 G T 3: 54,636,266 (GRCm39) A255E probably damaging Het
Fhip1a G A 3: 85,595,838 (GRCm39) P349L probably damaging Het
Fndc3c1 C T X: 105,477,128 (GRCm39) A824T probably benign Het
Gja10 G A 4: 32,601,812 (GRCm39) Q191* probably null Het
Gm1587 C T 14: 78,036,288 (GRCm39) R6Q unknown Het
Gm3409 A G 5: 146,476,418 (GRCm39) I190V probably benign Het
Gm4952 G T 19: 12,600,973 (GRCm39) M64I probably damaging Het
Gramd1b C T 9: 40,217,765 (GRCm39) M595I possibly damaging Het
Grik1 C T 16: 87,848,241 (GRCm39) V176M probably damaging Het
Grin2b A G 6: 136,021,044 (GRCm39) C86R probably damaging Het
Gtse1 C T 15: 85,746,264 (GRCm39) probably benign Het
Hectd2 T C 19: 36,589,719 (GRCm39) Y615H probably damaging Het
Hydin T C 8: 111,229,579 (GRCm39) F1552S possibly damaging Het
Ifi207 A G 1: 173,557,211 (GRCm39) V516A possibly damaging Het
Igfbp5 G T 1: 72,913,184 (GRCm39) P39T probably damaging Het
Il23r T A 6: 67,400,719 (GRCm39) D537V possibly damaging Het
Invs A G 4: 48,390,095 (GRCm39) Y251C probably damaging Het
Isl1 G T 13: 116,444,953 (GRCm39) H25Q probably damaging Het
Kif13a A G 13: 46,966,221 (GRCm39) L399P probably damaging Het
Klhl1 A G 14: 96,584,225 (GRCm39) V335A probably benign Het
Klhl14 C A 18: 21,784,843 (GRCm39) A195S probably damaging Het
Lepr A G 4: 101,639,927 (GRCm39) probably benign Het
Map1b A C 13: 99,567,454 (GRCm39) S1756A unknown Het
Med23 C T 10: 24,785,710 (GRCm39) A877V probably benign Het
Mfsd4b2 T C 10: 39,797,458 (GRCm39) Y299C probably damaging Het
Mipol1 T A 12: 57,379,205 (GRCm39) M221K probably damaging Het
Muc4 A T 16: 32,569,350 (GRCm39) S137C probably damaging Het
Mutyh T C 4: 116,673,855 (GRCm39) Y189H probably damaging Het
Nabp2 T C 10: 128,245,182 (GRCm39) T21A possibly damaging Het
Nalf1 T C 8: 9,820,217 (GRCm39) T268A probably benign Het
Nell1 T A 7: 50,350,943 (GRCm39) V530E possibly damaging Het
Npc1 G C 18: 12,346,435 (GRCm39) P254A possibly damaging Het
Nup153 A G 13: 46,854,502 (GRCm39) V530A probably damaging Het
Nxpe2 T C 9: 48,237,914 (GRCm39) T114A probably damaging Het
Or10j5 T C 1: 172,784,881 (GRCm39) V173A probably damaging Het
Or11h4b A G 14: 50,918,872 (GRCm39) V73A probably benign Het
Or7e177 T C 9: 20,212,354 (GRCm39) V287A probably benign Het
Pabpc4l A G 3: 46,401,066 (GRCm39) Y193H probably damaging Het
Pank1 T C 19: 34,856,281 (GRCm39) S66G probably benign Het
Pcdhb1 A T 18: 37,399,233 (GRCm39) K395* probably null Het
Pcna A G 2: 132,093,817 (GRCm39) probably benign Het
Pgr T A 9: 8,903,630 (GRCm39) Y550* probably null Het
Phf11a A G 14: 59,519,316 (GRCm39) probably benign Het
Pkhd1 A T 1: 20,151,524 (GRCm39) probably benign Het
Pofut2 T A 10: 77,096,642 (GRCm39) Y122* probably null Het
Pole A G 5: 110,475,644 (GRCm39) M1818V probably benign Het
Rapgef3 A G 15: 97,647,914 (GRCm39) L696P probably damaging Het
Rasal3 T C 17: 32,616,327 (GRCm39) D310G probably damaging Het
Rhoq A G 17: 87,302,486 (GRCm39) K141E probably benign Het
Rilpl1 A G 5: 124,652,813 (GRCm39) probably benign Het
Rnaseh1 T C 12: 28,703,088 (GRCm39) S91P probably benign Het
Rsf1 G GACGGCGGCT 7: 97,229,116 (GRCm39) probably benign Het
Saa1 C A 7: 46,391,856 (GRCm39) G31W probably null Het
Saxo5 T A 8: 3,536,947 (GRCm39) I431K possibly damaging Het
Scaf8 A G 17: 3,218,352 (GRCm39) T241A unknown Het
Scarb2 C T 5: 92,592,125 (GRCm39) A473T possibly damaging Het
Scnn1b T C 7: 121,509,670 (GRCm39) F273S probably damaging Het
Sdccag8 T C 1: 176,656,536 (GRCm39) V136A probably damaging Het
Sdr16c6 A T 4: 4,069,926 (GRCm39) V138E probably damaging Het
Sf3a3 G A 4: 124,615,886 (GRCm39) A180T possibly damaging Het
Slc16a5 T A 11: 115,360,842 (GRCm39) S342T probably damaging Het
Slc18a1 A G 8: 69,526,464 (GRCm39) S75P probably benign Het
Slc7a6 T A 8: 106,920,120 (GRCm39) probably benign Het
Smco3 G A 6: 136,808,845 (GRCm39) Q10* probably null Het
Spem2 T C 11: 69,708,290 (GRCm39) Q225R probably benign Het
Ssb G T 2: 69,697,901 (GRCm39) probably null Het
Stx8 T C 11: 68,000,106 (GRCm39) I182T probably damaging Het
Synj2 T A 17: 6,040,542 (GRCm39) I121N probably damaging Het
Tbc1d1 T C 5: 64,502,643 (GRCm39) Y1055H probably damaging Het
Thbs3 G T 3: 89,125,067 (GRCm39) R52L probably damaging Het
Tmem101 C T 11: 102,044,222 (GRCm39) V222I probably benign Het
Tnks2 C T 19: 36,823,068 (GRCm39) Q112* probably null Het
Tnrc6b T A 15: 80,764,924 (GRCm39) W809R probably damaging Het
Trib2 T A 12: 15,865,454 (GRCm39) R16S probably damaging Het
Trim12a T C 7: 103,956,331 (GRCm39) N70D probably damaging Het
Trim55 T A 3: 19,716,046 (GRCm39) probably null Het
Tspyl5 T A 15: 33,687,153 (GRCm39) D264V probably damaging Het
Ttn A G 2: 76,555,388 (GRCm39) V30539A probably damaging Het
Tubgcp3 A G 8: 12,713,988 (GRCm39) F43S possibly damaging Het
Tut7 A G 13: 59,964,548 (GRCm39) L209P probably damaging Het
Ube3d A G 9: 86,305,056 (GRCm39) L262P probably damaging Het
Ugt1a7c T C 1: 88,023,651 (GRCm39) V270A probably benign Het
Vav3 T A 3: 109,413,738 (GRCm39) F225L possibly damaging Het
Vmn1r21 G T 6: 57,821,077 (GRCm39) Y122* probably null Het
Vmn1r225 C A 17: 20,723,071 (GRCm39) Q171K probably benign Het
Vmn2r103 T C 17: 20,032,029 (GRCm39) V601A possibly damaging Het
Vmn2r19 T A 6: 123,308,589 (GRCm39) N555K probably damaging Het
Vps33a G A 5: 123,696,684 (GRCm39) A323V probably benign Het
Wdr77 C T 3: 105,874,618 (GRCm39) P337S probably benign Het
Wnk1 A T 6: 119,929,884 (GRCm39) I93N probably damaging Het
Zbtb9 T A 17: 27,193,612 (GRCm39) I339N probably damaging Het
Zfp202 T A 9: 40,121,083 (GRCm39) D241E probably damaging Het
Zfp235 T A 7: 23,840,563 (GRCm39) Y327* probably null Het
Zfp820 A C 17: 22,038,316 (GRCm39) D337E probably benign Het
Zfp944 T C 17: 22,560,065 (GRCm39) T14A probably damaging Het
Zfy1 A G Y: 729,733 (GRCm39) V303A unknown Het
Zfyve26 C T 12: 79,286,744 (GRCm39) W2281* probably null Het
Other mutations in Pabpc1l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00480:Pabpc1l APN 2 163,884,237 (GRCm39) missense probably damaging 1.00
IGL00911:Pabpc1l APN 2 163,884,343 (GRCm39) missense probably damaging 1.00
IGL02096:Pabpc1l APN 2 163,886,267 (GRCm39) missense probably benign 0.00
IGL02198:Pabpc1l APN 2 163,869,536 (GRCm39) missense probably damaging 0.97
IGL02534:Pabpc1l APN 2 163,869,410 (GRCm39) missense probably damaging 1.00
IGL02684:Pabpc1l APN 2 163,873,197 (GRCm39) missense probably benign
R0371:Pabpc1l UTSW 2 163,877,192 (GRCm39) missense probably benign 0.08
R0799:Pabpc1l UTSW 2 163,873,134 (GRCm39) missense probably benign
R1202:Pabpc1l UTSW 2 163,879,091 (GRCm39) missense possibly damaging 0.74
R1203:Pabpc1l UTSW 2 163,879,091 (GRCm39) missense possibly damaging 0.74
R1548:Pabpc1l UTSW 2 163,879,091 (GRCm39) missense possibly damaging 0.74
R1549:Pabpc1l UTSW 2 163,879,091 (GRCm39) missense possibly damaging 0.74
R1687:Pabpc1l UTSW 2 163,886,226 (GRCm39) missense probably benign 0.00
R2698:Pabpc1l UTSW 2 163,886,302 (GRCm39) critical splice donor site probably null
R3925:Pabpc1l UTSW 2 163,869,596 (GRCm39) splice site probably benign
R3944:Pabpc1l UTSW 2 163,884,247 (GRCm39) missense probably damaging 1.00
R4052:Pabpc1l UTSW 2 163,885,533 (GRCm39) missense probably benign 0.20
R4793:Pabpc1l UTSW 2 163,869,542 (GRCm39) missense possibly damaging 0.94
R5001:Pabpc1l UTSW 2 163,884,438 (GRCm39) missense probably benign 0.00
R5104:Pabpc1l UTSW 2 163,885,507 (GRCm39) missense probably benign 0.00
R5456:Pabpc1l UTSW 2 163,869,580 (GRCm39) missense probably damaging 1.00
R5569:Pabpc1l UTSW 2 163,885,474 (GRCm39) missense probably benign 0.00
R5853:Pabpc1l UTSW 2 163,891,438 (GRCm39) missense probably benign 0.00
R5857:Pabpc1l UTSW 2 163,886,175 (GRCm39) splice site probably null
R7107:Pabpc1l UTSW 2 163,884,399 (GRCm39) missense probably damaging 0.99
R7650:Pabpc1l UTSW 2 163,891,510 (GRCm39) missense probably benign 0.28
R8330:Pabpc1l UTSW 2 163,869,568 (GRCm39) missense probably damaging 1.00
R8336:Pabpc1l UTSW 2 163,874,204 (GRCm39) missense probably benign 0.07
R9179:Pabpc1l UTSW 2 163,873,140 (GRCm39) missense probably damaging 0.96
R9355:Pabpc1l UTSW 2 163,884,469 (GRCm39) missense probably benign 0.00
R9381:Pabpc1l UTSW 2 163,867,423 (GRCm39) missense probably benign
T0722:Pabpc1l UTSW 2 163,884,340 (GRCm39) missense possibly damaging 0.89
Z1088:Pabpc1l UTSW 2 163,874,244 (GRCm39) splice site probably null
Predicted Primers PCR Primer
(F):5'- CTGAAGGATAGCAATTGGTCCAAG -3'
(R):5'- ACAGGTTTAGCAGGGAGTCG -3'

Sequencing Primer
(F):5'- TCCAAGTGACCTAGGGTTGC -3'
(R):5'- GGGCCTGCATGGTCTCTTC -3'
Posted On 2014-07-14