Mutagenetix > Incidental Mutation

Incidental Mutation 'R0193:Vmn2r5'

216063

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r5

Ensembl Gene

ENSMUSG00000068999

Gene Name

vomeronasal 2, receptor 5

Synonyms

EG667060

MMRRC Submission

038452-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.122) question?

Stock #

R0193 (G1)

Quality Score

Status

Validated (trace)

Chromosome

Chromosomal Location

64490821-64509735 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 64491530 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 589 (I589T)

Ref Sequence

ENSEMBL: ENSMUSP00000131925 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000170270] [ENSMUST00000177184]

AlphaFold

K7N788

Predicted Effect

possibly damaging
Transcript: ENSMUST00000170270
AA Change: I589T

PolyPhen 2 Score 0.913 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000131925
Gene: ENSMUSG00000068999
AA Change: I589T

Domain	Start	End	E-Value	Type
Pfam:ANF_receptor	1	416	9.9e-78	PFAM
Pfam:NCD3G	458	511	8.5e-18	PFAM
Pfam:7tm_3	542	779	2.3e-74	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000177184
AA Change: I676T

PolyPhen 2 Score 0.821 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000135592
Gene: ENSMUSG00000068999
AA Change: I676T

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
Pfam:ANF_receptor	86	503	1.8e-80	PFAM
Pfam:NCD3G	545	598	1e-14	PFAM
Pfam:7tm_3	631	865	1.4e-45	PFAM

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 94.7%
20x: 85.3%

Validation Efficiency

95% (186/196)

Allele List at MGI

Other mutations in this stock

Total: 91 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
9330182L06Rik	A	T	5: 9,422,359	Q352L	probably damaging	Het
Adgrb1	T	C	15: 74,572,156	S96P	probably damaging	Het
Akr1c20	A	G	13: 4,511,293		probably benign	Het
Atp2a3	G	T	11: 72,972,220	V99L	possibly damaging	Het
Atp6v0a1	T	A	11: 101,048,482	I691N	possibly damaging	Het
Atp8b1	C	T	18: 64,561,636	R525Q	probably benign	Het
Aurkb	A	G	11: 69,048,544	D151G	probably damaging	Het
Bank1	A	T	3: 136,066,518		probably benign	Het
Bcl9l	T	C	9: 44,507,406	L847P	probably damaging	Het
Bscl2	T	A	19: 8,847,429	M292K	probably benign	Het
Cacna1c	C	T	6: 118,602,402		probably benign	Het
Cadps2	T	C	6: 23,599,440	K260R	probably benign	Het
Cc2d2a	T	C	5: 43,736,118	S1419P	probably damaging	Het
Ccdc180	G	A	4: 45,914,803	E145K	probably benign	Het
Ccdc58	T	C	16: 36,082,814	S59P	probably damaging	Het
Ccno	C	T	13: 112,988,884		probably benign	Het
Cd300a	A	G	11: 114,893,376	D70G	probably benign	Het
Cenpc1	T	C	5: 86,032,403	D670G	probably benign	Het
Cenpl	A	G	1: 161,085,988	I323V	probably damaging	Het
Cfap44	A	G	16: 44,449,210		probably null	Het
Cfap74	C	T	4: 155,426,115	R386C	probably benign	Het
Cic	C	A	7: 25,287,141	S1299Y	probably damaging	Het
Cic	T	A	7: 25,287,140	S1299T	probably damaging	Het
Clcnkb	T	C	4: 141,412,316	E125G	possibly damaging	Het
Clstn1	G	A	4: 149,634,796	V361M	probably damaging	Het
Coro7	G	A	16: 4,627,504		probably benign	Het
Dchs1	C	T	7: 105,764,983	R875H	probably benign	Het
Eif3j1	A	C	2: 122,052,027	M239L	probably benign	Het
Eif4g3	G	T	4: 138,146,376		probably benign	Het
Erbb4	T	C	1: 68,043,960		probably benign	Het
Erlin2	T	G	8: 27,031,764	V164G	possibly damaging	Het
Fbxo43	G	T	15: 36,161,883	Q393K	probably benign	Het
Fcgr4	A	T	1: 171,025,760	N178I	possibly damaging	Het
Grid2	A	G	6: 64,063,953	N293S	possibly damaging	Het
H2-M1	C	T	17: 36,671,332	V126I	probably benign	Het
Htr1f	T	A	16: 64,926,749	Y60F	probably damaging	Het
Ilf2	A	G	3: 90,481,339		probably null	Het
Impg2	A	T	16: 56,265,049	K931*	probably null	Het
Ints1	T	C	5: 139,751,730	E2176G	probably damaging	Het
Iqsec2	T	C	X: 152,223,403	V1319A	probably benign	Het
Iqsec3	G	T	6: 121,410,724	D685E	probably damaging	Het
Itgbl1	G	A	14: 123,846,546	V279I	probably benign	Het
Kdm4b	C	T	17: 56,393,952	A541V	probably benign	Het
Kif14	A	T	1: 136,468,438	T161S	probably benign	Het
Krt86	T	C	15: 101,479,363		probably benign	Het
Kyat1	C	T	2: 30,187,186		probably null	Het
Limch1	T	C	5: 67,027,539	W791R	probably damaging	Het
Map3k11	T	A	19: 5,695,846	M396K	probably damaging	Het
Mat2a	A	G	6: 72,436,195		probably null	Het
Mbnl2	A	G	14: 120,379,237	I88V	possibly damaging	Het
Mib2	T	C	4: 155,655,673	T708A	probably benign	Het
Mkks	T	C	2: 136,877,606		probably null	Het
Mtss1	T	C	15: 58,944,017	M565V	probably damaging	Het
Myoc	A	G	1: 162,649,035	N436S	probably damaging	Het
Myod1	T	A	7: 46,377,112	V147E	probably damaging	Het
Ngef	A	G	1: 87,509,334	L144P	probably benign	Het
Ngrn	C	T	7: 80,261,930	R92W	probably damaging	Het
Nup153	G	A	13: 46,709,654	T349I	probably benign	Het
Olfr1211	T	A	2: 88,930,283	I11L	probably benign	Het
Olfr600	G	T	7: 103,346,204	S241R	possibly damaging	Het
Pigl	A	G	11: 62,503,748	I135M	probably damaging	Het
Pitpnm3	A	G	11: 72,070,492		probably benign	Het
Pkhd1	A	T	1: 20,358,917	F2420I	probably damaging	Het
Polr2b	C	T	5: 77,320,076	T119M	probably damaging	Het
Prr29	A	G	11: 106,376,896	Y130C	probably damaging	Het
Rab11fip3	T	C	17: 25,990,999	I1048V	probably damaging	Het
Rab12	G	A	17: 66,500,362	T124I	probably damaging	Het
Rab44	A	G	17: 29,140,307	S490G	probably benign	Het
Rasa3	A	G	8: 13,570,233		probably null	Het
Rhbdl3	C	T	11: 80,353,574	S369L	possibly damaging	Het
Rimbp2	A	T	5: 128,788,356	S643T	probably benign	Het
Rin1	T	G	19: 5,052,652	S396R	probably damaging	Het
Rpusd3	C	T	6: 113,419,237	G28S	probably damaging	Het
Rtl9	T	A	X: 143,100,278	S229T	probably damaging	Het
Rufy1	G	T	11: 50,389,852	T701N	probably benign	Het
Scn4a	A	T	11: 106,320,538	L1551*	probably null	Het
Sec24b	T	C	3: 129,988,984	N1119S	probably null	Het
Serbp1	T	A	6: 67,272,884	*75R	probably null	Het
Setx	C	T	2: 29,179,673	P2497S	probably benign	Het
Slc26a11	A	T	11: 119,359,314	I132F	probably damaging	Het
Slc4a1	A	G	11: 102,352,684	V707A	possibly damaging	Het
Slfn1	A	G	11: 83,121,843	I262V	probably damaging	Het
Tmem168	T	A	6: 13,583,313	D523V	possibly damaging	Het
Traf7	G	T	17: 24,510,551	Q469K	probably benign	Het
Trdmt1	C	A	2: 13,544,617	V6F	probably damaging	Het
Tsacc	A	T	3: 88,287,088		probably benign	Het
Vmn2r7	T	C	3: 64,691,039	D699G	probably damaging	Het
Vmn2r82	T	C	10: 79,381,295	V487A	probably damaging	Het
Zfp287	A	T	11: 62,715,029	S351T	probably benign	Het
Zfp651	T	C	9: 121,767,666	V696A	probably damaging	Het
Zfp654	T	C	16: 64,785,688	H176R	possibly damaging	Het

Other mutations in Vmn2r5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00742:Vmn2r5	APN	3	64,491,413 (GRCm38)	missense	possibly damaging	0.67
IGL01139:Vmn2r5	APN	3	64,491,405 (GRCm38)	missense	probably benign	0.28
IGL03293:Vmn2r5	APN	3	64,491,326 (GRCm38)	missense	probably benign	0.01
PIT4581001:Vmn2r5	UTSW	3	64,503,927 (GRCm38)	nonsense	probably null
R0063:Vmn2r5	UTSW	3	64,503,800 (GRCm38)	missense	probably benign	0.01
R0142:Vmn2r5	UTSW	3	64,492,588 (GRCm38)	missense	probably damaging	1.00
R0219:Vmn2r5	UTSW	3	64,504,313 (GRCm38)	missense	probably damaging	0.99
R0313:Vmn2r5	UTSW	3	64,503,827 (GRCm38)	missense	probably benign
R0620:Vmn2r5	UTSW	3	64,503,814 (GRCm38)	nonsense	probably null
R0726:Vmn2r5	UTSW	3	64,503,765 (GRCm38)	missense	probably benign	0.01
R1073:Vmn2r5	UTSW	3	64,491,305 (GRCm38)	nonsense	probably null
R1549:Vmn2r5	UTSW	3	64,504,000 (GRCm38)	missense	probably damaging	1.00
R1581:Vmn2r5	UTSW	3	64,491,219 (GRCm38)	missense	probably damaging	1.00
R1624:Vmn2r5	UTSW	3	64,509,695 (GRCm38)	missense	probably benign	0.19
R1973:Vmn2r5	UTSW	3	64,504,221 (GRCm38)	missense	probably damaging	1.00
R1974:Vmn2r5	UTSW	3	64,504,221 (GRCm38)	missense	probably damaging	1.00
R1975:Vmn2r5	UTSW	3	64,504,221 (GRCm38)	missense	probably damaging	1.00
R1977:Vmn2r5	UTSW	3	64,504,221 (GRCm38)	missense	probably damaging	1.00
R2189:Vmn2r5	UTSW	3	64,509,593 (GRCm38)	missense	probably benign	0.27
R2484:Vmn2r5	UTSW	3	64,503,971 (GRCm38)	missense	possibly damaging	0.94
R4573:Vmn2r5	UTSW	3	64,503,918 (GRCm38)	missense	probably damaging	0.98
R5243:Vmn2r5	UTSW	3	64,504,076 (GRCm38)	missense	probably damaging	1.00
R5384:Vmn2r5	UTSW	3	64,509,510 (GRCm38)	missense	probably benign	0.02
R5385:Vmn2r5	UTSW	3	64,509,510 (GRCm38)	missense	probably benign	0.02
R5587:Vmn2r5	UTSW	3	64,504,076 (GRCm38)	missense	probably damaging	1.00
R5588:Vmn2r5	UTSW	3	64,504,076 (GRCm38)	missense	probably damaging	1.00
R5589:Vmn2r5	UTSW	3	64,504,076 (GRCm38)	missense	probably damaging	1.00
R5590:Vmn2r5	UTSW	3	64,504,076 (GRCm38)	missense	probably damaging	1.00
R5739:Vmn2r5	UTSW	3	64,504,076 (GRCm38)	missense	probably damaging	1.00
R6113:Vmn2r5	UTSW	3	64,491,399 (GRCm38)	missense	probably benign	0.03
R6739:Vmn2r5	UTSW	3	64,491,216 (GRCm38)	missense	probably damaging	0.97
R7106:Vmn2r5	UTSW	3	64,491,683 (GRCm38)	missense	probably benign	0.05
R7304:Vmn2r5	UTSW	3	64,504,250 (GRCm38)	missense	probably damaging	0.97
R7402:Vmn2r5	UTSW	3	64,495,755 (GRCm38)	missense	probably benign	0.05
R7477:Vmn2r5	UTSW	3	64,491,639 (GRCm38)	missense	probably damaging	1.00
R7571:Vmn2r5	UTSW	3	64,504,404 (GRCm38)	missense	probably damaging	1.00
R7678:Vmn2r5	UTSW	3	64,509,522 (GRCm38)	missense	probably benign
R7874:Vmn2r5	UTSW	3	64,491,032 (GRCm38)	missense	probably damaging	1.00
R8110:Vmn2r5	UTSW	3	64,491,288 (GRCm38)	missense	probably benign	0.00
R8223:Vmn2r5	UTSW	3	64,491,305 (GRCm38)	nonsense	probably null
R8767:Vmn2r5	UTSW	3	64,507,682 (GRCm38)	missense	possibly damaging	0.79
R8896:Vmn2r5	UTSW	3	64,503,782 (GRCm38)	missense	probably benign	0.00
R8948:Vmn2r5	UTSW	3	64,491,101 (GRCm38)	missense	probably damaging	1.00
R8950:Vmn2r5	UTSW	3	64,491,101 (GRCm38)	missense	probably damaging	1.00
R8962:Vmn2r5	UTSW	3	64,491,143 (GRCm38)	missense	probably damaging	1.00
R9012:Vmn2r5	UTSW	3	64,504,494 (GRCm38)	missense	probably damaging	1.00
R9109:Vmn2r5	UTSW	3	64,503,990 (GRCm38)	missense	possibly damaging	0.58
R9126:Vmn2r5	UTSW	3	64,491,738 (GRCm38)	missense	probably benign	0.13
R9192:Vmn2r5	UTSW	3	64,491,517 (GRCm38)	nonsense	probably null
R9221:Vmn2r5	UTSW	3	64,504,300 (GRCm38)	nonsense	probably null
R9375:Vmn2r5	UTSW	3	64,503,895 (GRCm38)	missense	probably damaging	1.00
R9529:Vmn2r5	UTSW	3	64,492,597 (GRCm38)	missense	probably benign	0.06
Z1088:Vmn2r5	UTSW	3	64,509,542 (GRCm38)	missense	probably benign	0.02
Z1177:Vmn2r5	UTSW	3	64,491,051 (GRCm38)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CAAGCCATAGCTGGATGCCAAAATG -3'
(R):5'- TTACGAAGAGGCACTGGGGTTCAC -3'

Sequencing Primer
(F):5'- CCTTTGGTGCTCAAGTAAGCAG -3'
(R):5'- GCACTGGGGTTCACTCTTG -3'

Posted On

2014-07-21