Incidental Mutation 'R1964:Ddx60'
ID 217107
Institutional Source Beutler Lab
Gene Symbol Ddx60
Ensembl Gene ENSMUSG00000037921
Gene Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
Synonyms
MMRRC Submission 039977-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.199) question?
Stock # R1964 (G1)
Quality Score 225
Status Not validated
Chromosome 8
Chromosomal Location 61928087-62038244 bp(+) (GRCm38)
Type of Mutation missense
DNA Base Change (assembly) T to A at 61948869 bp (GRCm38)
Zygosity Heterozygous
Amino Acid Change Cysteine to Serine at position 260 (C260S)
Ref Sequence ENSEMBL: ENSMUSP00000122841 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000070631] [ENSMUST00000093485] [ENSMUST00000154398]
AlphaFold E9PZQ1
Predicted Effect probably benign
Transcript: ENSMUST00000070631
AA Change: C260S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000070741
Gene: ENSMUSG00000037921
AA Change: C260S

DomainStartEndE-ValueType
low complexity region 99 110 N/A INTRINSIC
low complexity region 364 376 N/A INTRINSIC
DEXDc 758 949 1.05e-15 SMART
Blast:DEXDc 1007 1132 4e-24 BLAST
HELICc 1245 1328 4.35e-13 SMART
low complexity region 1362 1373 N/A INTRINSIC
Blast:DEXDc 1503 1584 1e-20 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000093485
AA Change: C260S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000091197
Gene: ENSMUSG00000037921
AA Change: C260S

DomainStartEndE-ValueType
low complexity region 99 110 N/A INTRINSIC
low complexity region 364 376 N/A INTRINSIC
DEXDc 759 950 1.05e-15 SMART
Blast:DEXDc 1008 1133 4e-24 BLAST
HELICc 1246 1329 4.35e-13 SMART
low complexity region 1363 1374 N/A INTRINSIC
Blast:DEXDc 1504 1585 1e-20 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000154398
AA Change: C260S

PolyPhen 2 Score 0.097 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000122841
Gene: ENSMUSG00000037921
AA Change: C260S

DomainStartEndE-ValueType
low complexity region 99 110 N/A INTRINSIC
low complexity region 364 376 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.1%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit normal immunity to several viruses (IAV, EMCV, SINV) but increased susceptibility to VSV infection. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 96 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700010I14Rik C T 17: 8,992,492 (GRCm38) H158Y probably damaging Het
1810009J06Rik T A 6: 40,968,207 (GRCm38) C207S probably damaging Het
Aadac T A 3: 60,037,338 (GRCm38) probably null Het
Abca6 T A 11: 110,184,676 (GRCm38) I1330F probably damaging Het
Adar A T 3: 89,745,895 (GRCm38) S263C probably benign Het
Adra2b T C 2: 127,363,814 (GRCm38) Y84H probably damaging Het
Arnt2 A T 7: 84,343,789 (GRCm38) V181E possibly damaging Het
Atg7 T C 6: 114,706,230 (GRCm38) L418P probably damaging Het
Atp2c1 A G 9: 105,446,123 (GRCm38) L181P probably damaging Het
Awat2 G A X: 100,404,559 (GRCm38) P148S probably damaging Het
Birc6 A G 17: 74,634,885 (GRCm38) M2737V possibly damaging Het
Ccdc81 A G 7: 89,886,153 (GRCm38) C292R probably benign Het
Cd14 T A 18: 36,726,339 (GRCm38) E21V probably damaging Het
Cdc14b A C 13: 64,215,537 (GRCm38) C303W probably damaging Het
Cdh23 T C 10: 60,385,222 (GRCm38) I1248V probably benign Het
Ceacam1 T C 7: 25,474,708 (GRCm38) D174G probably benign Het
Cgas T G 9: 78,437,455 (GRCm38) Y228S probably damaging Het
Chd7 A G 4: 8,865,978 (GRCm38) M717V probably damaging Het
Cib1 T C 7: 80,232,372 (GRCm38) T20A possibly damaging Het
Clec4d A G 6: 123,262,360 (GRCm38) K9R probably benign Het
Cntnap1 C A 11: 101,178,024 (GRCm38) S131* probably null Het
Crybg1 T C 10: 43,958,330 (GRCm38) K1581R probably damaging Het
Csf2 T G 11: 54,248,458 (GRCm38) T100P probably benign Het
Csrp2 T A 10: 110,932,033 (GRCm38) D26E probably benign Het
Cul1 T C 6: 47,502,571 (GRCm38) V257A probably damaging Het
Cul4a G A 8: 13,136,406 (GRCm38) M505I possibly damaging Het
Cul4a T C 8: 13,136,854 (GRCm38) M530T probably benign Het
Dcp2 T C 18: 44,395,971 (GRCm38) M51T possibly damaging Het
Dennd2c G A 3: 103,166,491 (GRCm38) R851H probably damaging Het
Dnah11 T C 12: 118,142,292 (GRCm38) E625G possibly damaging Het
Edem1 T C 6: 108,844,947 (GRCm38) W322R probably benign Het
Egflam T C 15: 7,247,105 (GRCm38) T527A probably damaging Het
Ephb1 T A 9: 101,971,123 (GRCm38) M659L possibly damaging Het
Fbxl2 A G 9: 113,989,169 (GRCm38) I203T probably benign Het
Gabbr1 G A 17: 37,048,459 (GRCm38) G109R probably damaging Het
Gabra2 T C 5: 71,014,450 (GRCm38) I148V possibly damaging Het
Golga1 A G 2: 39,047,087 (GRCm38) V161A probably benign Het
Gps2 T G 11: 69,916,420 (GRCm38) S301A probably benign Het
H2-D1 T C 17: 35,263,619 (GRCm38) L105P probably benign Het
Igdcc4 T C 9: 65,122,769 (GRCm38) V367A probably benign Het
Igkv4-69 T G 6: 69,283,798 (GRCm38) Y115S probably benign Het
Itga5 A G 15: 103,354,314 (GRCm38) L309P probably damaging Het
Itih1 A G 14: 30,929,623 (GRCm38) Y871H probably damaging Het
Itpr2 T A 6: 146,111,693 (GRCm38) N2662I probably damaging Het
Kctd19 T A 8: 105,388,470 (GRCm38) E486D probably damaging Het
Kif5b C T 18: 6,209,059 (GRCm38) R901Q possibly damaging Het
Kmt2a G A 9: 44,820,644 (GRCm38) S2792F probably benign Het
Magi3 A G 3: 104,020,402 (GRCm38) V1023A probably damaging Het
Mapk9 C A 11: 49,854,333 (GRCm38) R25S probably null Het
Memo1 T C 17: 74,245,008 (GRCm38) T98A possibly damaging Het
Mill2 A G 7: 18,856,604 (GRCm38) K203R probably damaging Het
Mios T A 6: 8,215,798 (GRCm38) H331Q probably damaging Het
Muc6 G T 7: 141,640,062 (GRCm38) S1566* probably null Het
Muc6 A G 7: 141,640,063 (GRCm38) probably benign Het
Napsa T C 7: 44,581,685 (GRCm38) F113L probably benign Het
Or5ac16 T A 16: 59,201,908 (GRCm38) I173F possibly damaging Het
Or9m1 A G 2: 87,903,667 (GRCm38) V3A probably benign Het
Oscp1 T G 4: 126,083,622 (GRCm38) V226G possibly damaging Het
Osgin2 G T 4: 15,998,358 (GRCm38) S421R probably damaging Het
Pclaf A G 9: 65,893,395 (GRCm38) N50D probably damaging Het
Pdgfc A T 3: 81,174,985 (GRCm38) I162F probably benign Het
Plag1 T C 4: 3,903,956 (GRCm38) T412A probably benign Het
Pogz A T 3: 94,878,193 (GRCm38) T820S probably benign Het
Ptpn9 T A 9: 57,059,912 (GRCm38) V473D probably damaging Het
Qdpr A T 5: 45,439,318 (GRCm38) M66K possibly damaging Het
Qrich1 A G 9: 108,534,422 (GRCm38) N382S possibly damaging Het
Rbbp8 T C 18: 11,742,679 (GRCm38) V883A possibly damaging Het
Rgl1 T A 1: 152,549,104 (GRCm38) I375F probably damaging Het
Rif1 C T 2: 52,098,409 (GRCm38) T720I probably benign Het
Rilp A T 11: 75,510,502 (GRCm38) Q95L probably benign Het
Rnf169 T A 7: 99,925,525 (GRCm38) N621I probably damaging Het
Rps27a T C 11: 29,547,229 (GRCm38) K27R probably null Het
Sar1a T C 10: 61,685,168 (GRCm38) V54A probably benign Het
Sash1 T A 10: 8,729,713 (GRCm38) H971L probably benign Het
Sdk2 G A 11: 113,781,017 (GRCm38) Q2102* probably null Het
Serpina1e T A 12: 103,951,207 (GRCm38) I68F probably damaging Het
Serpinb9e A C 13: 33,253,491 (GRCm38) Q119P probably benign Het
Sh3tc2 A T 18: 61,991,155 (GRCm38) K965* probably null Het
Slc16a1 A T 3: 104,649,466 (GRCm38) S56C probably damaging Het
Slc26a11 T A 11: 119,380,194 (GRCm38) L563Q possibly damaging Het
Smarca2 G T 19: 26,672,724 (GRCm38) E24* probably null Het
Smgc G A 15: 91,860,270 (GRCm38) G239D probably damaging Het
Sos2 A T 12: 69,616,862 (GRCm38) M616K possibly damaging Het
Tet1 T A 10: 62,812,947 (GRCm38) D1902V possibly damaging Het
Thap2 C T 10: 115,384,247 (GRCm38) C10Y probably damaging Het
Tln2 T C 9: 67,342,135 (GRCm38) D890G probably benign Het
Tor2a G A 2: 32,758,704 (GRCm38) G62D probably damaging Het
Ubqln5 A T 7: 104,128,888 (GRCm38) V243E possibly damaging Het
Utrn A T 10: 12,684,437 (GRCm38) D1369E probably damaging Het
Vcan A G 13: 89,692,742 (GRCm38) V1561A probably benign Het
Vmn1r70 T C 7: 10,633,810 (GRCm38) F56S possibly damaging Het
Vmn2r25 A G 6: 123,823,295 (GRCm38) L696S possibly damaging Het
Washc2 A G 6: 116,208,987 (GRCm38) T53A probably damaging Het
Wnk1 T A 6: 119,934,382 (GRCm38) T2417S possibly damaging Het
Zbtb49 A T 5: 38,203,761 (GRCm38) C12* probably null Het
Zfp472 C A 17: 32,977,874 (GRCm38) P308T possibly damaging Het
Other mutations in Ddx60
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00340:Ddx60 APN 8 61,958,646 (GRCm38) missense probably damaging 1.00
IGL00915:Ddx60 APN 8 61,987,431 (GRCm38) missense possibly damaging 0.79
IGL00931:Ddx60 APN 8 61,969,583 (GRCm38) missense probably benign 0.18
IGL01023:Ddx60 APN 8 61,942,514 (GRCm38) missense probably damaging 0.99
IGL01313:Ddx60 APN 8 61,982,526 (GRCm38) missense probably damaging 1.00
IGL01615:Ddx60 APN 8 61,963,740 (GRCm38) missense probably null 0.81
IGL01733:Ddx60 APN 8 61,983,865 (GRCm38) missense probably damaging 0.99
IGL01779:Ddx60 APN 8 62,017,823 (GRCm38) missense possibly damaging 0.94
IGL01900:Ddx60 APN 8 62,000,709 (GRCm38) splice site probably benign
IGL02110:Ddx60 APN 8 62,017,247 (GRCm38) critical splice donor site probably null
IGL02302:Ddx60 APN 8 61,975,832 (GRCm38) missense possibly damaging 0.85
IGL02468:Ddx60 APN 8 61,958,642 (GRCm38) missense probably damaging 1.00
IGL02569:Ddx60 APN 8 62,024,951 (GRCm38) missense possibly damaging 0.93
IGL02622:Ddx60 APN 8 61,942,436 (GRCm38) splice site probably null
IGL02657:Ddx60 APN 8 61,984,115 (GRCm38) missense probably benign 0.01
IGL02677:Ddx60 APN 8 61,988,132 (GRCm38) missense probably damaging 1.00
IGL02701:Ddx60 APN 8 61,979,341 (GRCm38) missense probably damaging 0.96
IGL02806:Ddx60 APN 8 61,956,122 (GRCm38) missense probably benign 0.00
IGL03137:Ddx60 APN 8 61,988,083 (GRCm38) missense possibly damaging 0.61
IGL03295:Ddx60 APN 8 61,956,121 (GRCm38) missense possibly damaging 0.82
IGL03387:Ddx60 APN 8 62,012,449 (GRCm38) missense probably damaging 1.00
IGL03411:Ddx60 APN 8 61,977,882 (GRCm38) critical splice acceptor site probably null
Scatter UTSW 8 62,021,314 (GRCm38) missense possibly damaging 0.80
shotgun UTSW 8 62,037,067 (GRCm38) missense probably benign 0.28
splay UTSW 8 62,021,309 (GRCm38) missense possibly damaging 0.80
G1Funyon:Ddx60 UTSW 8 62,000,597 (GRCm38) missense probably benign 0.01
PIT4504001:Ddx60 UTSW 8 61,958,113 (GRCm38) missense probably benign
PIT4677001:Ddx60 UTSW 8 61,972,254 (GRCm38) missense possibly damaging 0.87
R0090:Ddx60 UTSW 8 61,942,293 (GRCm38) missense probably damaging 1.00
R0266:Ddx60 UTSW 8 62,033,493 (GRCm38) missense possibly damaging 0.92
R0325:Ddx60 UTSW 8 61,983,855 (GRCm38) missense probably benign 0.00
R0367:Ddx60 UTSW 8 62,017,749 (GRCm38) missense possibly damaging 0.78
R0403:Ddx60 UTSW 8 61,994,541 (GRCm38) splice site probably benign
R0479:Ddx60 UTSW 8 61,969,657 (GRCm38) missense probably damaging 1.00
R0561:Ddx60 UTSW 8 62,017,794 (GRCm38) missense possibly damaging 0.93
R0844:Ddx60 UTSW 8 61,987,361 (GRCm38) missense probably benign 0.27
R1119:Ddx60 UTSW 8 61,942,544 (GRCm38) missense probably damaging 1.00
R1428:Ddx60 UTSW 8 61,958,159 (GRCm38) splice site probably benign
R1778:Ddx60 UTSW 8 61,974,176 (GRCm38) missense possibly damaging 0.85
R1840:Ddx60 UTSW 8 61,969,553 (GRCm38) missense probably damaging 0.99
R1970:Ddx60 UTSW 8 61,972,206 (GRCm38) missense possibly damaging 0.93
R2101:Ddx60 UTSW 8 61,940,645 (GRCm38) missense probably damaging 1.00
R2174:Ddx60 UTSW 8 62,017,200 (GRCm38) missense probably benign 0.01
R2174:Ddx60 UTSW 8 61,956,141 (GRCm38) missense probably damaging 1.00
R2198:Ddx60 UTSW 8 61,958,063 (GRCm38) missense possibly damaging 0.79
R2332:Ddx60 UTSW 8 62,037,091 (GRCm38) missense probably benign 0.08
R2338:Ddx60 UTSW 8 62,012,436 (GRCm38) missense possibly damaging 0.91
R2379:Ddx60 UTSW 8 62,037,088 (GRCm38) missense probably damaging 1.00
R4010:Ddx60 UTSW 8 61,956,144 (GRCm38) missense probably benign 0.25
R4010:Ddx60 UTSW 8 61,954,535 (GRCm38) missense possibly damaging 0.65
R4133:Ddx60 UTSW 8 61,972,220 (GRCm38) missense probably damaging 0.99
R4282:Ddx60 UTSW 8 61,994,393 (GRCm38) missense probably damaging 0.99
R4382:Ddx60 UTSW 8 61,948,978 (GRCm38) splice site probably null
R4561:Ddx60 UTSW 8 61,942,461 (GRCm38) missense probably damaging 0.96
R4572:Ddx60 UTSW 8 61,987,421 (GRCm38) missense probably damaging 1.00
R4581:Ddx60 UTSW 8 62,023,261 (GRCm38) missense possibly damaging 0.90
R4635:Ddx60 UTSW 8 62,037,067 (GRCm38) missense probably benign 0.28
R4698:Ddx60 UTSW 8 62,012,424 (GRCm38) missense probably benign 0.01
R4807:Ddx60 UTSW 8 61,979,338 (GRCm38) missense probably damaging 1.00
R4858:Ddx60 UTSW 8 62,021,314 (GRCm38) missense possibly damaging 0.80
R4964:Ddx60 UTSW 8 61,979,338 (GRCm38) missense probably damaging 1.00
R5120:Ddx60 UTSW 8 61,945,906 (GRCm38) missense probably benign 0.01
R5187:Ddx60 UTSW 8 61,974,188 (GRCm38) missense probably damaging 1.00
R5222:Ddx60 UTSW 8 61,984,158 (GRCm38) missense probably damaging 0.99
R5400:Ddx60 UTSW 8 62,010,002 (GRCm38) missense possibly damaging 0.65
R5500:Ddx60 UTSW 8 61,950,451 (GRCm38) missense probably benign 0.28
R5514:Ddx60 UTSW 8 61,958,057 (GRCm38) missense probably damaging 1.00
R5668:Ddx60 UTSW 8 62,000,578 (GRCm38) missense probably benign 0.38
R5742:Ddx60 UTSW 8 61,948,921 (GRCm38) missense probably benign
R5772:Ddx60 UTSW 8 61,948,897 (GRCm38) missense probably damaging 1.00
R5810:Ddx60 UTSW 8 62,012,388 (GRCm38) nonsense probably null
R5815:Ddx60 UTSW 8 61,963,722 (GRCm38) missense probably damaging 0.98
R5820:Ddx60 UTSW 8 61,956,121 (GRCm38) missense possibly damaging 0.82
R5866:Ddx60 UTSW 8 61,940,740 (GRCm38) missense probably damaging 1.00
R5881:Ddx60 UTSW 8 62,037,070 (GRCm38) missense probably damaging 1.00
R5977:Ddx60 UTSW 8 62,021,410 (GRCm38) critical splice donor site probably null
R6048:Ddx60 UTSW 8 62,000,582 (GRCm38) missense probably benign 0.01
R6061:Ddx60 UTSW 8 62,023,241 (GRCm38) missense probably null 0.01
R6153:Ddx60 UTSW 8 61,945,940 (GRCm38) missense possibly damaging 0.47
R6287:Ddx60 UTSW 8 61,950,578 (GRCm38) missense probably damaging 1.00
R6415:Ddx60 UTSW 8 61,983,905 (GRCm38) missense probably benign 0.00
R6416:Ddx60 UTSW 8 61,998,681 (GRCm38) missense probably benign
R6416:Ddx60 UTSW 8 61,977,950 (GRCm38) missense probably benign 0.00
R6660:Ddx60 UTSW 8 61,956,239 (GRCm38) missense probably benign 0.00
R6694:Ddx60 UTSW 8 62,037,070 (GRCm38) missense probably damaging 1.00
R6715:Ddx60 UTSW 8 61,983,890 (GRCm38) missense probably benign 0.03
R6720:Ddx60 UTSW 8 62,000,689 (GRCm38) missense probably benign 0.10
R6937:Ddx60 UTSW 8 62,037,069 (GRCm38) missense probably damaging 1.00
R7153:Ddx60 UTSW 8 61,988,108 (GRCm38) missense possibly damaging 0.71
R7274:Ddx60 UTSW 8 61,940,108 (GRCm38) critical splice donor site probably null
R7409:Ddx60 UTSW 8 61,958,578 (GRCm38) missense probably benign 0.24
R7464:Ddx60 UTSW 8 61,940,674 (GRCm38) missense possibly damaging 0.82
R7670:Ddx60 UTSW 8 61,975,792 (GRCm38) missense probably damaging 1.00
R7904:Ddx60 UTSW 8 61,977,890 (GRCm38) missense possibly damaging 0.81
R7992:Ddx60 UTSW 8 61,954,535 (GRCm38) missense probably benign 0.03
R8124:Ddx60 UTSW 8 61,983,911 (GRCm38) missense probably benign
R8125:Ddx60 UTSW 8 61,983,911 (GRCm38) missense probably benign
R8126:Ddx60 UTSW 8 61,983,911 (GRCm38) missense probably benign
R8155:Ddx60 UTSW 8 62,017,171 (GRCm38) missense possibly damaging 0.61
R8174:Ddx60 UTSW 8 62,017,250 (GRCm38) splice site probably null
R8192:Ddx60 UTSW 8 61,977,968 (GRCm38) missense probably damaging 1.00
R8271:Ddx60 UTSW 8 61,940,108 (GRCm38) critical splice donor site probably null
R8301:Ddx60 UTSW 8 62,000,597 (GRCm38) missense probably benign 0.01
R8304:Ddx60 UTSW 8 61,998,769 (GRCm38) missense possibly damaging 0.67
R8319:Ddx60 UTSW 8 61,942,635 (GRCm38) critical splice donor site probably null
R8374:Ddx60 UTSW 8 61,974,171 (GRCm38) missense probably benign 0.01
R8401:Ddx60 UTSW 8 61,956,243 (GRCm38) missense possibly damaging 0.57
R8487:Ddx60 UTSW 8 61,974,150 (GRCm38) missense probably damaging 1.00
R8804:Ddx60 UTSW 8 61,958,606 (GRCm38) missense probably benign 0.27
R8826:Ddx60 UTSW 8 61,945,956 (GRCm38) missense probably benign 0.02
R8829:Ddx60 UTSW 8 61,940,661 (GRCm38) missense probably damaging 1.00
R8881:Ddx60 UTSW 8 62,021,309 (GRCm38) missense possibly damaging 0.80
R8884:Ddx60 UTSW 8 61,994,519 (GRCm38) missense possibly damaging 0.86
R8990:Ddx60 UTSW 8 61,974,134 (GRCm38) nonsense probably null
R9122:Ddx60 UTSW 8 61,989,864 (GRCm38) missense probably benign 0.16
R9225:Ddx60 UTSW 8 62,017,841 (GRCm38) missense probably benign 0.36
R9278:Ddx60 UTSW 8 61,977,978 (GRCm38) missense possibly damaging 0.83
R9293:Ddx60 UTSW 8 62,009,960 (GRCm38) missense possibly damaging 0.89
R9405:Ddx60 UTSW 8 61,972,214 (GRCm38) missense probably benign 0.03
R9766:Ddx60 UTSW 8 62,012,278 (GRCm38) missense probably damaging 1.00
X0003:Ddx60 UTSW 8 62,033,417 (GRCm38) missense possibly damaging 0.88
X0019:Ddx60 UTSW 8 61,963,692 (GRCm38) missense probably benign 0.01
Z1177:Ddx60 UTSW 8 62,000,588 (GRCm38) missense possibly damaging 0.92
Predicted Primers PCR Primer
(F):5'- CGGAGTGGCATACCTTAATTTC -3'
(R):5'- GAATCCTGCTGTAACAACCTTTATCC -3'

Sequencing Primer
(F):5'- CCCTTGCAGTTGTTATATTACTGAAG -3'
(R):5'- CCCATTGTAACAATCTGTATTCCAG -3'
Posted On 2014-08-01