Mutagenetix > Incidental Mutation

Incidental Mutation 'R1953:Nlrp10'

217474

Institutional Source

Beutler Lab

Gene Symbol

Nlrp10

Ensembl Gene

ENSMUSG00000049709

Gene Name

NLR family, pyrin domain containing 10

Synonyms

Nalp10, 6430548I20Rik, Pynod

MMRRC Submission

039967-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1953 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

108521060-108529365 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 108524325 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 385 (D385G)

Ref Sequence

ENSEMBL: ENSMUSP00000050252 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055745]

AlphaFold

Q8CCN1

PDB Structure

Solution structure of the Pyrin/PAAD-DAPIN domain in mouse NALP10 (NACHT, leucine rich repeat and PYD containing 10) [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000055745
AA Change: D385G

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000050252
Gene: ENSMUSG00000049709
AA Change: D385G

Domain	Start	End	E-Value	Type
PYRIN	9	88	4.13e-18	SMART
low complexity region	126	137	N/A	INTRINSIC
AAA	161	302	1.07e-2	SMART
low complexity region	576	597	N/A	INTRINSIC
low complexity region	646	659	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.9%
20x: 94.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Members of the NALP protein family typically contain a NACHT domain, a NACHT-associated domain (NAD), a C-terminal leucine-rich repeat (LRR) region, and an N-terminal pyrin domain (PYD). The protein encoded by this gene belongs to the NALP protein family despite lacking the LRR region. This protein likely plays a regulatory role in the innate immune system. The protein belongs to the signal-induced multiprotein complex, the inflammasome, that activates the pro-inflammatory caspases, caspase-1 and caspase-5. Other experiments indicate that this gene acts as a multifunctional negative regulator of inflammation and apoptosis. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele display a global defect in adaptive immune responses with impaired dendritic cell migration to lymph nodes. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5730455P16Rik	A	T	11: 80,268,772 (GRCm39)	D12E	probably damaging	Het
Abca15	C	T	7: 119,960,655 (GRCm39)	R706C	probably damaging	Het
Actr1a	G	A	19: 46,369,387 (GRCm39)	S209F	probably benign	Het
Adcy1	A	G	11: 7,028,991 (GRCm39)	N247S	probably benign	Het
Anapc4	T	C	5: 52,997,030 (GRCm39)	L101S	probably damaging	Het
Asap3	C	T	4: 135,954,767 (GRCm39)	R60*	probably null	Het
Ascc3	T	C	10: 50,721,726 (GRCm39)	S2060P	probably benign	Het
Atp9b	G	A	18: 80,797,522 (GRCm39)	T851I	possibly damaging	Het
Borcs5	A	G	6: 134,687,230 (GRCm39)	H196R	unknown	Het
Bpifb9b	A	C	2: 154,153,234 (GRCm39)	D100A	probably damaging	Het
Cant1	G	C	11: 118,299,609 (GRCm39)	P247A	probably damaging	Het
Capza3	A	T	6: 139,988,294 (GRCm39)	I298L	possibly damaging	Het
Cdh10	T	C	15: 18,966,997 (GRCm39)		probably null	Het
Celsr3	T	C	9: 108,720,381 (GRCm39)	V2551A	probably benign	Het
Ces4a	G	A	8: 105,864,729 (GRCm39)	G69S	probably damaging	Het
Cmtr2	T	C	8: 110,948,551 (GRCm39)	L287P	probably damaging	Het
Crebbp	G	A	16: 3,997,313 (GRCm39)	T257I	probably benign	Het
Crispld2	G	A	8: 120,742,035 (GRCm39)	V128M	probably damaging	Het
Crnkl1	G	A	2: 145,770,120 (GRCm39)	A241V	probably damaging	Het
Dmd	T	A	X: 82,874,123 (GRCm39)	I1342N	probably damaging	Het
Dnah10	A	G	5: 124,859,332 (GRCm39)	T2043A	probably benign	Het
Dscaml1	C	T	9: 45,581,522 (GRCm39)	T447I	probably benign	Het
Eif2ak3	A	G	6: 70,869,538 (GRCm39)	T742A	probably benign	Het
Farp1	A	G	14: 121,492,894 (GRCm39)	T499A	probably benign	Het
Fcgr1	G	A	3: 96,194,386 (GRCm39)	T167I	probably damaging	Het
Fgd5	C	A	6: 92,001,611 (GRCm39)	H935Q	probably benign	Het
Fhl4	A	T	10: 84,934,171 (GRCm39)	D203E	probably benign	Het
Gapt	T	G	13: 110,490,340 (GRCm39)	T108P	probably damaging	Het
Gpt2	A	G	8: 86,248,013 (GRCm39)	T419A	probably benign	Het
Gucy2c	A	G	6: 136,681,291 (GRCm39)	V907A	probably damaging	Het
Hmbs	T	C	9: 44,248,741 (GRCm39)	D211G	probably damaging	Het
Irx5	A	G	8: 93,086,438 (GRCm39)	N174D	probably damaging	Het
Itfg1	A	G	8: 86,557,860 (GRCm39)	V170A	probably benign	Het
Itga2b	T	A	11: 102,349,009 (GRCm39)	T732S	probably benign	Het
Klhl3	A	G	13: 58,159,022 (GRCm39)	Y546H	probably damaging	Het
Lama5	G	A	2: 179,832,540 (GRCm39)	H1670Y	possibly damaging	Het
Mlst8	AT	ATT	17: 24,696,987 (GRCm39)		probably null	Het
Nbeal1	T	C	1: 60,273,999 (GRCm39)	V409A	probably damaging	Het
Nlgn1	T	A	3: 25,490,464 (GRCm39)	D421V	probably damaging	Het
Nr2e3	T	A	9: 59,857,079 (GRCm39)	D30V	probably benign	Het
Nyap1	A	G	5: 137,733,294 (GRCm39)	S580P	probably benign	Het
Or4c108	G	A	2: 88,804,224 (GRCm39)	Q4*	probably null	Het
Or4c12	A	G	2: 89,774,267 (GRCm39)	L64P	probably damaging	Het
Or4e2	T	A	14: 52,688,344 (GRCm39)	V158E	probably benign	Het
Pex1	A	G	5: 3,680,038 (GRCm39)	H952R	probably damaging	Het
Plin4	T	A	17: 56,410,849 (GRCm39)	I1061F	possibly damaging	Het
Pnkp	C	A	7: 44,512,026 (GRCm39)	R517S	probably benign	Het
Polr2e	T	A	10: 79,874,388 (GRCm39)	E39D	probably benign	Het
Pramel18	T	C	4: 101,767,312 (GRCm39)	I187T	probably benign	Het
Prokr1	T	C	6: 87,565,575 (GRCm39)	Y90C	probably benign	Het
Ptprm	A	T	17: 67,247,575 (GRCm39)	S587T	probably benign	Het
Rere	G	A	4: 150,701,294 (GRCm39)	E1225K	probably damaging	Het
Rsl24d1	G	T	9: 73,021,896 (GRCm39)		probably benign	Het
Selp	A	G	1: 163,954,081 (GRCm39)	N127S	probably benign	Het
Slc22a18	C	T	7: 143,029,984 (GRCm39)	T17I	probably damaging	Het
Smad2	A	G	18: 76,395,776 (GRCm39)	T72A	possibly damaging	Het
Snx29	G	A	16: 11,217,647 (GRCm39)	W149*	probably null	Het
Stk31	G	T	6: 49,423,412 (GRCm39)		probably null	Het
Sult1e1	T	G	5: 87,735,530 (GRCm39)		probably null	Het
Syngap1	G	A	17: 27,163,661 (GRCm39)	R41H	possibly damaging	Het
Tbc1d17	T	A	7: 44,490,822 (GRCm39)		probably null	Het
Tex55	G	T	16: 38,648,275 (GRCm39)	T278K	possibly damaging	Het
Tie1	A	T	4: 118,329,987 (GRCm39)		probably null	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Usp47	T	A	7: 111,692,083 (GRCm39)	D848E	probably benign	Het
Vmn1r72	A	G	7: 11,403,731 (GRCm39)	L239P	probably damaging	Het
Vmn2r124	T	C	17: 18,283,122 (GRCm39)	I272T	probably benign	Het
Vwa1	C	T	4: 155,857,571 (GRCm39)	V76M	probably damaging	Het
Xrn1	G	T	9: 95,906,274 (GRCm39)		probably null	Het
Zfp667	G	T	7: 6,308,087 (GRCm39)	V252F	probably benign	Het
Zranb3	A	T	1: 127,927,136 (GRCm39)	V343D	probably damaging	Het

Other mutations in Nlrp10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01374:Nlrp10	APN	7	108,523,788 (GRCm39)	missense	possibly damaging	0.86
IGL01482:Nlrp10	APN	7	108,526,159 (GRCm39)	missense	probably benign
IGL02043:Nlrp10	APN	7	108,524,709 (GRCm39)	missense	probably damaging	0.99
IGL03129:Nlrp10	APN	7	108,524,118 (GRCm39)	missense	probably damaging	1.00
IGL02835:Nlrp10	UTSW	7	108,523,869 (GRCm39)	missense	possibly damaging	0.61
R0106:Nlrp10	UTSW	7	108,524,529 (GRCm39)	missense	possibly damaging	0.94
R0106:Nlrp10	UTSW	7	108,524,529 (GRCm39)	missense	possibly damaging	0.94
R0540:Nlrp10	UTSW	7	108,523,492 (GRCm39)	missense	probably benign	0.26
R0607:Nlrp10	UTSW	7	108,523,492 (GRCm39)	missense	probably benign	0.26
R1166:Nlrp10	UTSW	7	108,524,217 (GRCm39)	missense	probably damaging	1.00
R1248:Nlrp10	UTSW	7	108,525,088 (GRCm39)	missense	probably benign	0.08
R1450:Nlrp10	UTSW	7	108,524,595 (GRCm39)	missense	probably damaging	0.98
R1459:Nlrp10	UTSW	7	108,523,555 (GRCm39)	missense	probably benign
R1567:Nlrp10	UTSW	7	108,526,257 (GRCm39)	missense	probably benign	0.02
R1635:Nlrp10	UTSW	7	108,523,737 (GRCm39)	missense	possibly damaging	0.93
R1845:Nlrp10	UTSW	7	108,526,248 (GRCm39)	missense	probably damaging	1.00
R1912:Nlrp10	UTSW	7	108,524,602 (GRCm39)	nonsense	probably null
R1952:Nlrp10	UTSW	7	108,523,770 (GRCm39)	missense	probably benign	0.20
R2079:Nlrp10	UTSW	7	108,524,835 (GRCm39)	missense	possibly damaging	0.66
R3615:Nlrp10	UTSW	7	108,523,683 (GRCm39)	missense	probably benign
R3616:Nlrp10	UTSW	7	108,523,683 (GRCm39)	missense	probably benign
R4207:Nlrp10	UTSW	7	108,523,548 (GRCm39)	missense	possibly damaging	0.56
R4786:Nlrp10	UTSW	7	108,524,445 (GRCm39)	missense	probably damaging	1.00
R5048:Nlrp10	UTSW	7	108,523,772 (GRCm39)	missense	probably benign	0.01
R5568:Nlrp10	UTSW	7	108,523,468 (GRCm39)	missense	probably benign	0.00
R5993:Nlrp10	UTSW	7	108,526,220 (GRCm39)	missense	probably benign	0.00
R6033:Nlrp10	UTSW	7	108,523,784 (GRCm39)	missense	probably benign	0.17
R6033:Nlrp10	UTSW	7	108,523,784 (GRCm39)	missense	probably benign	0.17
R6170:Nlrp10	UTSW	7	108,523,671 (GRCm39)	missense	probably benign	0.00
R6320:Nlrp10	UTSW	7	108,524,953 (GRCm39)	missense	possibly damaging	0.82
R6935:Nlrp10	UTSW	7	108,526,107 (GRCm39)	missense	probably damaging	0.99
R7024:Nlrp10	UTSW	7	108,524,405 (GRCm39)	missense	possibly damaging	0.73
R7081:Nlrp10	UTSW	7	108,523,855 (GRCm39)	missense	probably benign	0.02
R7397:Nlrp10	UTSW	7	108,523,899 (GRCm39)	missense	probably damaging	1.00
R7720:Nlrp10	UTSW	7	108,523,695 (GRCm39)	missense	probably benign	0.36
R7763:Nlrp10	UTSW	7	108,525,033 (GRCm39)	missense	probably damaging	0.99
R7776:Nlrp10	UTSW	7	108,524,656 (GRCm39)	missense	probably damaging	1.00
R7823:Nlrp10	UTSW	7	108,523,468 (GRCm39)	missense	probably benign	0.00
R7852:Nlrp10	UTSW	7	108,524,281 (GRCm39)	missense	probably damaging	1.00
R8272:Nlrp10	UTSW	7	108,525,103 (GRCm39)	missense	probably benign	0.00
R9181:Nlrp10	UTSW	7	108,524,108 (GRCm39)	missense	probably damaging	0.99
R9712:Nlrp10	UTSW	7	108,524,735 (GRCm39)	missense	probably damaging	1.00
Z1177:Nlrp10	UTSW	7	108,525,058 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AAATTCCTGGAAGCTGATGTGGC -3'
(R):5'- AAAATGCCCTTGAGTTTGTGC -3'

Sequencing Primer
(F):5'- CGAAAGCTGTAGAATTTCTTGATGCC -3'
(R):5'- TGTGCAAAACAATGCTGTTCTC -3'

Posted On

2014-08-01