Mutagenetix > Incidental Mutation

Incidental Mutation 'R1956:Stam2'

217751

Institutional Source

Beutler Lab

Gene Symbol

Stam2

Ensembl Gene

ENSMUSG00000055371

Gene Name

signal transducing adaptor molecule (SH3 domain and ITAM motif) 2

Synonyms

1200004O12Rik, 5730456G07Rik, Hbp

MMRRC Submission

039970-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1956 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

52582213-52632212 bp(-) (GRCm39)

Type of Mutation

critical splice acceptor site

DNA Base Change (assembly)

T to C at 52598239 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000121898 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102759] [ENSMUST00000127316] [ENSMUST00000155516]

AlphaFold

O88811

PDB Structure

Crystal Structure of STAM2 SH3 domain in complex with a UBPY-derived peptide [X-RAY DIFFRACTION]

Predicted Effect

probably null
Transcript: ENSMUST00000102759

SMART Domains

Protein: ENSMUSP00000099820
Gene: ENSMUSG00000055371

Domain	Start	End	E-Value	Type
VHS	9	140	6.36e-57	SMART
UIM	165	184	3.24e-3	SMART
SH3	205	260	5.69e-21	SMART
Pfam:GAT	294	367	2.3e-8	PFAM
low complexity region	502	515	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000127316

SMART Domains

Protein: ENSMUSP00000121898
Gene: ENSMUSG00000055371

Domain	Start	End	E-Value	Type
Pfam:VHS	4	70	8.5e-20	PFAM
UIM	132	151	3.24e-3	SMART
SH3	172	227	5.69e-21	SMART
PDB:3F1I\|C	258	334	4e-29	PDB

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150582

Predicted Effect

probably benign
Transcript: ENSMUST00000155516

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 94.2%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is closely related to STAM, an adaptor protein involved in the downstream signaling of cytokine receptors, both of which contain a SH3 domain and the immunoreceptor tyrosine-based activation motif (ITAM). Similar to STAM, this protein acts downstream of JAK kinases, and is phosphorylated in response to cytokine stimulation. This protein and STAM thus are thought to exhibit compensatory effects on the signaling pathway downstream of JAK kinases upon cytokine stimulation. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a targeted null mutation exhibit no discernable phenotype; mice are viable and fertile with normal lymphocyte responses. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 102 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aard	A	T	15: 51,908,316 (GRCm39)	D157V	probably damaging	Het
Abcg5	A	G	17: 84,977,803 (GRCm39)	V151A	probably damaging	Het
Acss3	A	G	10: 106,772,029 (GRCm39)	V682A	probably benign	Het
Adamts9	A	T	6: 92,836,830 (GRCm39)	C641S	probably damaging	Het
Adipor1	T	C	1: 134,350,771 (GRCm39)	S7P	probably benign	Het
Ankrd27	T	A	7: 35,303,264 (GRCm39)	Y215N	probably damaging	Het
Arhgef7	T	A	8: 11,855,266 (GRCm39)	L182Q	probably damaging	Het
Arnt	C	T	3: 95,355,704 (GRCm39)	S16L	possibly damaging	Het
Arrdc4	T	C	7: 68,391,547 (GRCm39)	K240R	probably benign	Het
Atg2b	T	C	12: 105,635,677 (GRCm39)	Y197C	probably damaging	Het
Atp13a2	A	G	4: 140,731,572 (GRCm39)	K907R	possibly damaging	Het
Cadps2	A	T	6: 23,287,685 (GRCm39)	M1160K	probably damaging	Het
Cdk12	A	G	11: 98,110,042 (GRCm39)	T688A	probably benign	Het
Cfap43	T	A	19: 47,885,649 (GRCm39)	Y322F	probably benign	Het
Crabp2	T	C	3: 87,856,193 (GRCm39)	F16L	probably damaging	Het
Creb3	A	G	4: 43,563,279 (GRCm39)		probably null	Het
Crk	T	C	11: 75,583,496 (GRCm39)	Y239H	possibly damaging	Het
Cyp3a13	A	G	5: 137,908,204 (GRCm39)	I215T	probably benign	Het
D130043K22Rik	A	G	13: 25,069,578 (GRCm39)	Y879C	probably damaging	Het
Depdc5	T	C	5: 33,061,175 (GRCm39)	V334A	probably damaging	Het
Dgkh	T	C	14: 78,855,981 (GRCm39)	N231S	probably damaging	Het
Disp2	T	A	2: 118,622,704 (GRCm39)	H1145Q	probably benign	Het
Epb41l4b	T	C	4: 57,038,553 (GRCm39)	T563A	possibly damaging	Het
Ephb3	G	A	16: 21,040,132 (GRCm39)	R498H	probably damaging	Het
F10	T	C	8: 13,105,422 (GRCm39)	I329T	probably damaging	Het
Fam13b	G	T	18: 34,578,382 (GRCm39)	Q760K	possibly damaging	Het
Fmo4	G	A	1: 162,631,259 (GRCm39)	T236I	probably benign	Het
Foxp4	C	T	17: 48,186,796 (GRCm39)	R378Q	unknown	Het
Fpr-rs4	A	G	17: 18,242,518 (GRCm39)	Y175C	probably damaging	Het
Fzd8	T	A	18: 9,214,502 (GRCm39)	M528K	probably damaging	Het
Gcc2	A	G	10: 58,121,965 (GRCm39)	H1134R	possibly damaging	Het
Gdf10	G	A	14: 33,654,710 (GRCm39)	A406T	probably benign	Het
Ggn	T	A	7: 28,871,341 (GRCm39)	S240R	probably damaging	Het
Git2	C	T	5: 114,887,398 (GRCm39)	W299*	probably null	Het
Gm42669	A	T	5: 107,656,738 (GRCm39)	E355D	possibly damaging	Het
Gm5134	T	C	10: 75,840,680 (GRCm39)	F508S	possibly damaging	Het
Gm9923	G	T	10: 72,145,490 (GRCm39)	V114L	probably benign	Het
Has3	A	T	8: 107,605,435 (GRCm39)	Y547F	probably benign	Het
Heatr5a	A	G	12: 51,992,202 (GRCm39)		probably null	Het
Hnrnpk	A	T	13: 58,544,000 (GRCm39)		probably null	Het
Ifna4	A	T	4: 88,760,311 (GRCm39)	I72F	probably damaging	Het
Ip6k3	A	T	17: 27,370,142 (GRCm39)	L92Q	probably benign	Het
Itpripl1	T	C	2: 126,983,927 (GRCm39)	E65G	probably damaging	Het
Kcnh5	G	C	12: 74,944,358 (GRCm39)	Q964E	probably benign	Het
Kmt2d	A	G	15: 98,757,471 (GRCm39)		probably benign	Het
Lrrc69	A	G	4: 14,665,986 (GRCm39)	V324A	possibly damaging	Het
Mefv	T	C	16: 3,535,691 (GRCm39)	Q79R	probably damaging	Het
Mettl17	T	C	14: 52,126,254 (GRCm39)	S168P	probably damaging	Het
Mpp4	A	T	1: 59,197,811 (GRCm39)	S23T	probably benign	Het
Nabp1	A	T	1: 51,517,004 (GRCm39)	V24D	probably damaging	Het
Nod2	T	A	8: 89,390,836 (GRCm39)	F359Y	probably damaging	Het
Or10g1b	C	T	14: 52,628,037 (GRCm39)	M64I	probably benign	Het
Or1p1c	A	T	11: 74,160,670 (GRCm39)	T152S	probably damaging	Het
Or51b17	T	G	7: 103,542,925 (GRCm39)	S6R	probably benign	Het
Or52d3	C	A	7: 104,229,116 (GRCm39)	L88M	probably damaging	Het
Or5ak4	T	C	2: 85,161,444 (GRCm39)	D266G	probably benign	Het
Or5b107	T	C	19: 13,142,560 (GRCm39)	Y61H	probably damaging	Het
Or6a2	C	T	7: 106,600,342 (GRCm39)	A242T	probably damaging	Het
Or7a39	A	G	10: 78,715,267 (GRCm39)	Q87R	probably benign	Het
Pcdh18	T	C	3: 49,710,400 (GRCm39)	H305R	probably benign	Het
Phf1	T	A	17: 27,154,719 (GRCm39)		probably null	Het
Pold3	T	C	7: 99,737,318 (GRCm39)	K379R	probably benign	Het
Polr1f	T	A	12: 33,487,817 (GRCm39)	V244D	probably benign	Het
Pou2f3	T	A	9: 43,056,534 (GRCm39)	T108S	probably benign	Het
Prdm5	C	A	6: 65,913,060 (GRCm39)	T203K	probably damaging	Het
Psma5	A	G	3: 108,173,760 (GRCm39)	S79G	probably benign	Het
Psme4	T	A	11: 30,782,424 (GRCm39)	S889T	probably damaging	Het
Ptk2	A	T	15: 73,087,832 (GRCm39)	V902D	possibly damaging	Het
Rad54l	T	A	4: 115,967,554 (GRCm39)	I243F	probably damaging	Het
Ralgapa2	A	G	2: 146,302,679 (GRCm39)	F95L	probably benign	Het
Rassf6	G	A	5: 90,763,730 (GRCm39)	Q71*	probably null	Het
Ryr2	A	T	13: 11,695,966 (GRCm39)	L2967H	probably damaging	Het
Scn5a	T	C	9: 119,346,479 (GRCm39)	T1058A	possibly damaging	Het
Sdk1	T	C	5: 142,080,336 (GRCm39)	L1276P	probably damaging	Het
Serpina12	T	G	12: 104,002,048 (GRCm39)	T223P	probably damaging	Het
Sh3yl1	A	G	12: 30,992,787 (GRCm39)		probably null	Het
Spata31g1	A	T	4: 42,970,105 (GRCm39)		probably null	Het
St6galnac5	T	A	3: 152,552,120 (GRCm39)	Q149L	probably benign	Het
Tac2	A	G	10: 127,564,349 (GRCm39)		probably null	Het
Tbata	G	A	10: 61,019,256 (GRCm39)	D271N	probably damaging	Het
Tbx3	T	C	5: 119,819,018 (GRCm39)	V531A	probably benign	Het
Tektl1	A	G	10: 78,586,373 (GRCm39)		probably null	Het
Thra	T	A	11: 98,654,567 (GRCm39)	D312E	probably benign	Het
Tlr1	T	A	5: 65,082,520 (GRCm39)	I686F	probably damaging	Het
Tmem86b	A	T	7: 4,631,706 (GRCm39)	F115L	probably benign	Het
Tmem94	A	G	11: 115,679,500 (GRCm39)	D259G	possibly damaging	Het
Trim69	G	A	2: 122,004,956 (GRCm39)		probably null	Het
Usp43	T	A	11: 67,795,159 (GRCm39)	Q243L	probably damaging	Het
Vcam1	T	C	3: 115,919,606 (GRCm39)	Y226C	probably damaging	Het
Vmn2r104	A	T	17: 20,262,313 (GRCm39)	N272K	probably damaging	Het
Vmn2r26	G	A	6: 124,030,846 (GRCm39)	C527Y	probably damaging	Het
Vmn2r84	G	A	10: 130,226,677 (GRCm39)	A387V	probably benign	Het
Vps13b	A	T	15: 35,869,553 (GRCm39)	I2686F	probably damaging	Het
Vps8	C	T	16: 21,279,892 (GRCm39)	T281M	probably damaging	Het
Wdfy3	A	G	5: 102,067,275 (GRCm39)	V1219A	probably benign	Het
Wnt9b	A	G	11: 103,621,638 (GRCm39)	C340R	probably damaging	Het
Zfhx3	T	C	8: 109,520,774 (GRCm39)	V632A	probably benign	Het
Zfp1006	A	T	8: 129,948,309 (GRCm39)	D41E	possibly damaging	Het
Zfp341	A	T	2: 154,480,132 (GRCm39)	T528S	probably benign	Het
Zfp990	G	A	4: 145,261,452 (GRCm39)	A33T	probably damaging	Het
Zranb1	T	G	7: 132,584,458 (GRCm39)	S601R	probably damaging	Het
Zyx	A	T	6: 42,328,289 (GRCm39)	K166I	probably damaging	Het

Other mutations in Stam2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00231:Stam2	APN	2	52,596,418 (GRCm39)	missense	possibly damaging	0.80
IGL00471:Stam2	APN	2	52,610,947 (GRCm39)	missense	probably damaging	1.00
IGL01480:Stam2	APN	2	52,606,451 (GRCm39)	missense	probably benign
IGL01731:Stam2	APN	2	52,598,162 (GRCm39)	missense	probably damaging	0.99
IGL02684:Stam2	APN	2	52,609,947 (GRCm39)	missense	probably damaging	1.00
IGL02893:Stam2	APN	2	52,604,914 (GRCm39)	missense	probably damaging	1.00
IGL02900:Stam2	APN	2	52,598,209 (GRCm39)	missense	probably benign
R0110:Stam2	UTSW	2	52,609,998 (GRCm39)	splice site	probably benign
R0257:Stam2	UTSW	2	52,584,794 (GRCm39)	missense	possibly damaging	0.90
R0539:Stam2	UTSW	2	52,593,268 (GRCm39)	splice site	probably benign
R1432:Stam2	UTSW	2	52,604,821 (GRCm39)	splice site	probably benign
R1699:Stam2	UTSW	2	52,593,187 (GRCm39)	missense	possibly damaging	0.55
R1822:Stam2	UTSW	2	52,606,539 (GRCm39)	missense	probably damaging	1.00
R1984:Stam2	UTSW	2	52,599,638 (GRCm39)	missense	possibly damaging	0.71
R1985:Stam2	UTSW	2	52,599,638 (GRCm39)	missense	possibly damaging	0.71
R1986:Stam2	UTSW	2	52,599,638 (GRCm39)	missense	possibly damaging	0.71
R1993:Stam2	UTSW	2	52,593,168 (GRCm39)	nonsense	probably null
R2179:Stam2	UTSW	2	52,584,936 (GRCm39)	missense	probably benign	0.00
R2181:Stam2	UTSW	2	52,593,156 (GRCm39)	missense	probably benign	0.00
R4617:Stam2	UTSW	2	52,605,716 (GRCm39)	missense	probably benign	0.00
R4723:Stam2	UTSW	2	52,610,962 (GRCm39)	missense	probably benign	0.10
R5217:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5218:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5219:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5366:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5368:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5420:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5447:Stam2	UTSW	2	52,626,305 (GRCm39)	intron	probably benign
R5490:Stam2	UTSW	2	52,610,929 (GRCm39)	missense	probably damaging	1.00
R5799:Stam2	UTSW	2	52,610,922 (GRCm39)	nonsense	probably null
R5861:Stam2	UTSW	2	52,632,116 (GRCm39)	utr 5 prime	probably benign
R6039:Stam2	UTSW	2	52,599,611 (GRCm39)	missense	probably benign
R6039:Stam2	UTSW	2	52,599,611 (GRCm39)	missense	probably benign
R6490:Stam2	UTSW	2	52,610,954 (GRCm39)	missense	probably benign	0.00
R6552:Stam2	UTSW	2	52,598,239 (GRCm39)	critical splice acceptor site	probably null
R6792:Stam2	UTSW	2	52,597,993 (GRCm39)	missense	probably benign
R7787:Stam2	UTSW	2	52,596,418 (GRCm39)	missense	probably benign	0.01
R8042:Stam2	UTSW	2	52,596,409 (GRCm39)	critical splice donor site	probably null
R8050:Stam2	UTSW	2	52,609,785 (GRCm39)	missense	probably damaging	1.00
R8074:Stam2	UTSW	2	52,596,438 (GRCm39)	missense	probably damaging	0.98
R8245:Stam2	UTSW	2	52,604,931 (GRCm39)	missense	possibly damaging	0.51
R8732:Stam2	UTSW	2	52,590,180 (GRCm39)	missense	probably damaging	0.99
R8856:Stam2	UTSW	2	52,604,984 (GRCm39)	missense	probably damaging	1.00
R9018:Stam2	UTSW	2	52,606,463 (GRCm39)	missense	probably benign
R9267:Stam2	UTSW	2	52,604,903 (GRCm39)	missense	probably damaging	1.00
R9679:Stam2	UTSW	2	52,606,582 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGGAAAAGCACTGTGCCCAC -3'
(R):5'- AGAAGATTCTGTTCACTCCCTGC -3'

Sequencing Primer
(F):5'- GCACTGTGCCCACATACTC -3'
(R):5'- GTTCACTCCCTGCACGAATCTAAG -3'

Posted On

2014-08-01