Incidental Mutation 'R0021:Hdhd2'
ID |
218444 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Hdhd2
|
Ensembl Gene |
ENSMUSG00000025421 |
Gene Name |
haloacid dehalogenase-like hydrolase domain containing 2 |
Synonyms |
3110052N05Rik, 0610039H12Rik |
MMRRC Submission |
038316-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R0021 (G1)
|
Quality Score |
24 |
Status
|
Validated
|
Chromosome |
18 |
Chromosomal Location |
77031775-77059867 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 77058311 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Lysine to Asparagine
at position 227
(K227N)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000114212
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000026485]
[ENSMUST00000097522]
[ENSMUST00000142456]
[ENSMUST00000145634]
[ENSMUST00000148955]
[ENSMUST00000150990]
|
AlphaFold |
Q3UGR5 |
PDB Structure |
Crystal Structure of Protein from Mouse Mm.236127 [X-RAY DIFFRACTION]
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000026485
AA Change: K227N
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000026485 Gene: ENSMUSG00000025421 AA Change: K227N
Domain | Start | End | E-Value | Type |
Pfam:Hydrolase_6
|
10 |
193 |
1.1e-21 |
PFAM |
Pfam:HAD_2
|
167 |
223 |
1e-7 |
PFAM |
Pfam:Hydrolase_like
|
176 |
251 |
3.4e-20 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000097522
AA Change: K227N
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000095129 Gene: ENSMUSG00000025421 AA Change: K227N
Domain | Start | End | E-Value | Type |
Pfam:Hydrolase_6
|
10 |
193 |
1.4e-21 |
PFAM |
Pfam:HAD_2
|
161 |
223 |
1.1e-7 |
PFAM |
Pfam:Hydrolase_like
|
176 |
251 |
1.3e-18 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000142456
|
SMART Domains |
Protein: ENSMUSP00000118504 Gene: ENSMUSG00000025421
Domain | Start | End | E-Value | Type |
Pfam:Yos1
|
5 |
66 |
4.8e-24 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000145634
AA Change: K227N
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000123320 Gene: ENSMUSG00000025421 AA Change: K227N
Domain | Start | End | E-Value | Type |
Pfam:Hydrolase_6
|
10 |
193 |
1.4e-21 |
PFAM |
Pfam:HAD_2
|
161 |
223 |
1.1e-7 |
PFAM |
Pfam:Hydrolase_like
|
176 |
251 |
1.3e-18 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000148955
AA Change: K227N
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000116243 Gene: ENSMUSG00000025421 AA Change: K227N
Domain | Start | End | E-Value | Type |
Pfam:Hydrolase_6
|
10 |
193 |
1.4e-21 |
PFAM |
Pfam:HAD_2
|
161 |
223 |
1.1e-7 |
PFAM |
Pfam:Hydrolase_like
|
176 |
251 |
1.3e-18 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000150990
AA Change: K227N
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000114212 Gene: ENSMUSG00000025421 AA Change: K227N
Domain | Start | End | E-Value | Type |
Pfam:Hydrolase_6
|
10 |
193 |
1.4e-21 |
PFAM |
Pfam:HAD_2
|
161 |
223 |
1.1e-7 |
PFAM |
Pfam:Hydrolase_like
|
176 |
251 |
1.3e-18 |
PFAM |
|
Meta Mutation Damage Score |
0.7026 |
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.8%
- 10x: 97.6%
- 20x: 95.8%
|
Validation Efficiency |
97% (60/62) |
MGI Phenotype |
PHENOTYPE: Mice homozygous for a transposon insertion results in complete embryonic lethality at E7. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 36 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2310016G11Rik |
A |
G |
7: 44,326,620 (GRCm39) |
|
noncoding transcript |
Het |
Abcc5 |
T |
A |
16: 20,197,411 (GRCm39) |
K647* |
probably null |
Het |
Aplp1 |
A |
G |
7: 30,135,241 (GRCm39) |
|
probably benign |
Het |
Arhgef25 |
A |
G |
10: 127,025,423 (GRCm39) |
I43T |
probably benign |
Het |
Brinp3 |
T |
G |
1: 146,777,189 (GRCm39) |
S545R |
probably benign |
Het |
Btnl1 |
A |
G |
17: 34,598,468 (GRCm39) |
E28G |
probably benign |
Het |
C5ar2 |
A |
G |
7: 15,971,601 (GRCm39) |
F109L |
probably benign |
Het |
D630045J12Rik |
G |
A |
6: 38,160,902 (GRCm39) |
Q1081* |
probably null |
Het |
Dhx36 |
T |
C |
3: 62,385,016 (GRCm39) |
I699V |
possibly damaging |
Het |
Dnah9 |
A |
G |
11: 65,860,805 (GRCm39) |
I2855T |
probably benign |
Het |
Dock8 |
T |
C |
19: 25,140,411 (GRCm39) |
I1317T |
probably benign |
Het |
Galnt11 |
A |
T |
5: 25,453,855 (GRCm39) |
D27V |
probably damaging |
Het |
Gm5134 |
T |
A |
10: 75,829,718 (GRCm39) |
C335S |
probably damaging |
Het |
Impg1 |
A |
T |
9: 80,317,479 (GRCm39) |
L36Q |
probably damaging |
Het |
Krtcap3 |
A |
G |
5: 31,410,303 (GRCm39) |
H227R |
probably benign |
Het |
Lrrc7 |
A |
G |
3: 157,866,298 (GRCm39) |
Y1148H |
probably damaging |
Het |
Map2k4 |
A |
G |
11: 65,603,110 (GRCm39) |
I174T |
probably damaging |
Het |
Mef2c |
C |
A |
13: 83,804,359 (GRCm39) |
L282M |
probably damaging |
Het |
Nkapd1 |
A |
C |
9: 50,521,725 (GRCm39) |
D65E |
probably damaging |
Het |
Nqo2 |
T |
C |
13: 34,165,490 (GRCm39) |
I129T |
probably benign |
Het |
Pdgfrb |
T |
A |
18: 61,197,998 (GRCm39) |
|
probably benign |
Het |
Phf7 |
C |
T |
14: 30,960,443 (GRCm39) |
|
probably benign |
Het |
Plac8 |
T |
A |
5: 100,704,434 (GRCm39) |
T88S |
probably benign |
Het |
Pou2f1 |
G |
A |
1: 165,703,587 (GRCm39) |
T654M |
probably damaging |
Het |
Ptprk |
T |
A |
10: 28,468,891 (GRCm39) |
V1425E |
probably damaging |
Het |
Saal1 |
A |
T |
7: 46,342,316 (GRCm39) |
S376T |
probably damaging |
Het |
Scart2 |
G |
A |
7: 139,876,310 (GRCm39) |
R594H |
probably benign |
Het |
Serpini1 |
T |
C |
3: 75,526,620 (GRCm39) |
Y291H |
probably damaging |
Het |
Siah2 |
T |
C |
3: 58,583,713 (GRCm39) |
H191R |
probably benign |
Het |
Spaca6 |
T |
A |
17: 18,058,498 (GRCm39) |
Y39* |
probably null |
Het |
Tbc1d10a |
T |
C |
11: 4,163,680 (GRCm39) |
C277R |
probably damaging |
Het |
Trim45 |
A |
T |
3: 100,832,736 (GRCm39) |
D323V |
probably damaging |
Het |
Trim55 |
A |
C |
3: 19,698,866 (GRCm39) |
M32L |
probably benign |
Het |
Unc5b |
T |
C |
10: 60,614,698 (GRCm39) |
T200A |
probably benign |
Het |
Uqcc4 |
A |
G |
17: 25,403,957 (GRCm39) |
E99G |
possibly damaging |
Het |
V1rd19 |
A |
T |
7: 23,703,029 (GRCm39) |
D165V |
probably damaging |
Het |
|
Other mutations in Hdhd2 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01063:Hdhd2
|
APN |
18 |
77,052,969 (GRCm39) |
splice site |
probably null |
|
IGL01102:Hdhd2
|
APN |
18 |
77,044,607 (GRCm39) |
missense |
probably damaging |
1.00 |
R0021:Hdhd2
|
UTSW |
18 |
77,058,311 (GRCm39) |
missense |
probably damaging |
1.00 |
R0717:Hdhd2
|
UTSW |
18 |
77,038,900 (GRCm39) |
missense |
possibly damaging |
0.94 |
R1958:Hdhd2
|
UTSW |
18 |
77,052,841 (GRCm39) |
missense |
probably benign |
|
R2060:Hdhd2
|
UTSW |
18 |
77,052,738 (GRCm39) |
splice site |
probably null |
|
R2266:Hdhd2
|
UTSW |
18 |
77,052,866 (GRCm39) |
missense |
probably benign |
0.00 |
R2268:Hdhd2
|
UTSW |
18 |
77,052,866 (GRCm39) |
missense |
probably benign |
0.00 |
R2269:Hdhd2
|
UTSW |
18 |
77,052,866 (GRCm39) |
missense |
probably benign |
0.00 |
R2871:Hdhd2
|
UTSW |
18 |
77,042,702 (GRCm39) |
missense |
probably damaging |
1.00 |
R2871:Hdhd2
|
UTSW |
18 |
77,042,702 (GRCm39) |
missense |
probably damaging |
1.00 |
R2872:Hdhd2
|
UTSW |
18 |
77,042,702 (GRCm39) |
missense |
probably damaging |
1.00 |
R2872:Hdhd2
|
UTSW |
18 |
77,042,702 (GRCm39) |
missense |
probably damaging |
1.00 |
R2873:Hdhd2
|
UTSW |
18 |
77,042,702 (GRCm39) |
missense |
probably damaging |
1.00 |
R3788:Hdhd2
|
UTSW |
18 |
77,042,883 (GRCm39) |
critical splice donor site |
probably null |
|
R3789:Hdhd2
|
UTSW |
18 |
77,042,883 (GRCm39) |
critical splice donor site |
probably null |
|
R5784:Hdhd2
|
UTSW |
18 |
77,054,841 (GRCm39) |
missense |
probably damaging |
1.00 |
R7403:Hdhd2
|
UTSW |
18 |
77,042,736 (GRCm39) |
missense |
probably benign |
0.00 |
R7406:Hdhd2
|
UTSW |
18 |
77,031,811 (GRCm39) |
missense |
probably benign |
0.01 |
R7644:Hdhd2
|
UTSW |
18 |
77,031,871 (GRCm39) |
missense |
possibly damaging |
0.79 |
R7849:Hdhd2
|
UTSW |
18 |
77,052,962 (GRCm39) |
missense |
probably damaging |
1.00 |
R8992:Hdhd2
|
UTSW |
18 |
77,058,366 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
Predicted Primers |
PCR Primer
(F):5'- ACTGTCACCGTTGTCTGGATTGC -3'
(R):5'- TTCACGGCTCAACTCTGGCATC -3'
Sequencing Primer
(F):5'- GGATTGCTCCTTTACCTCCTGAG -3'
(R):5'- TGAGTCAGTCATGCTCACAG -3'
|
Posted On |
2014-08-08 |