Mutagenetix > Incidental Mutation

Incidental Mutation 'R2026:Txndc11'

220705

Institutional Source

Beutler Lab

Gene Symbol

Txndc11

Ensembl Gene

ENSMUSG00000022498

Gene Name

thioredoxin domain containing 11

Synonyms

2810408E11Rik, EF-hand binding protein 1, EFP1, Txdc11

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.072) question?

Stock #

R2026 (G1)

Quality Score

105

Status

Not validated

Chromosome

Chromosomal Location

10892775-10952514 bp(-) (GRCm39)

Type of Mutation

small deletion (1 aa in frame mutation)

DNA Base Change (assembly)

CCCGCCGCCGCCGCCGC to CCCGCCGCCGCCGC at 10952338 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000114777 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037633] [ENSMUST00000038424] [ENSMUST00000118362] [ENSMUST00000118679] [ENSMUST00000145225] [ENSMUST00000147884] [ENSMUST00000155221]

AlphaFold

Q8K2W3

Predicted Effect

probably benign
Transcript: ENSMUST00000037633

SMART Domains

Protein: ENSMUSP00000041308
Gene: ENSMUSG00000037965

Domain	Start	End	E-Value	Type
PDB:2DBA\|A	26	157	9e-7	PDB
Blast:TPR	43	76	1e-7	BLAST
SCOP:d1ihga1	46	169	1e-11	SMART
Blast:TPR	124	156	9e-9	BLAST
low complexity region	308	319	N/A	INTRINSIC
low complexity region	380	398	N/A	INTRINSIC
ZnF_C2H2	443	467	1.83e2	SMART
ZnF_C3H1	630	654	1.57e1	SMART
ZnF_C3H1	770	795	8.81e0	SMART
ZnF_C2H2	856	880	1.62e0	SMART
ZnF_C3H1	902	926	1.76e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000038424

SMART Domains

Protein: ENSMUSP00000041113
Gene: ENSMUSG00000022498

Domain	Start	End	E-Value	Type
low complexity region	2	42	N/A	INTRINSIC
low complexity region	61	76	N/A	INTRINSIC
low complexity region	92	103	N/A	INTRINSIC
Pfam:Thioredoxin	107	208	5.8e-11	PFAM
Pfam:Thioredoxin	660	756	1e-11	PFAM
coiled coil region	793	830	N/A	INTRINSIC
low complexity region	927	936	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000118362

SMART Domains

Protein: ENSMUSP00000113432
Gene: ENSMUSG00000022498

Domain	Start	End	E-Value	Type
low complexity region	2	42	N/A	INTRINSIC
low complexity region	61	76	N/A	INTRINSIC
low complexity region	92	103	N/A	INTRINSIC
Pfam:Thioredoxin	107	208	2.5e-11	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000118679

SMART Domains

Protein: ENSMUSP00000112601
Gene: ENSMUSG00000022498

Domain	Start	End	E-Value	Type
low complexity region	2	42	N/A	INTRINSIC
low complexity region	61	76	N/A	INTRINSIC
low complexity region	92	103	N/A	INTRINSIC
Pfam:Thioredoxin	107	208	4.5e-12	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000138282

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143121

Predicted Effect

probably benign
Transcript: ENSMUST00000145225

SMART Domains

Protein: ENSMUSP00000116563
Gene: ENSMUSG00000022498

Domain	Start	End	E-Value	Type
low complexity region	2	42	N/A	INTRINSIC
low complexity region	61	76	N/A	INTRINSIC
low complexity region	92	103	N/A	INTRINSIC
Pfam:Thioredoxin	107	208	5.2e-12	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000147884

SMART Domains

Protein: ENSMUSP00000117426
Gene: ENSMUSG00000022498

Domain	Start	End	E-Value	Type
low complexity region	2	42	N/A	INTRINSIC
low complexity region	61	76	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000155221

SMART Domains

Protein: ENSMUSP00000114777
Gene: ENSMUSG00000022498

Domain	Start	End	E-Value	Type
low complexity region	2	42	N/A	INTRINSIC
low complexity region	61	76	N/A	INTRINSIC

Coding Region Coverage

1x: 99.4%
3x: 98.7%
10x: 97.3%
20x: 95.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
6430548M08Rik	A	G	8: 120,880,205 (GRCm39)	K269R	probably benign	Het
Abcc12	A	G	8: 87,284,862 (GRCm39)	V251A	probably benign	Het
Avil	G	A	10: 126,847,742 (GRCm39)	G556S	probably damaging	Het
C3	T	C	17: 57,525,562 (GRCm39)	Y898C	probably damaging	Het
Cacng2	A	G	15: 77,879,720 (GRCm39)	F201L	possibly damaging	Het
Casp7	T	A	19: 56,424,830 (GRCm39)	I183N	probably damaging	Het
Cntn3	A	T	6: 102,397,388 (GRCm39)	W62R	probably damaging	Het
Ctrb1	T	C	8: 112,415,317 (GRCm39)	N119S	probably benign	Het
Cyp3a59	G	A	5: 146,033,098 (GRCm39)	V157M	probably damaging	Het
Dhfr	G	T	13: 92,502,279 (GRCm39)	G117*	probably null	Het
Dido1	A	T	2: 180,330,974 (GRCm39)	L158*	probably null	Het
Dlg2	C	A	7: 91,614,931 (GRCm39)	P290Q	probably damaging	Het
Dnah3	T	A	7: 119,638,629 (GRCm39)	Q1240L	probably damaging	Het
Exd1	A	T	2: 119,350,786 (GRCm39)	S492T	probably benign	Het
Fermt1	T	C	2: 132,760,445 (GRCm39)	I415M	probably benign	Het
Fsip2	A	G	2: 82,819,788 (GRCm39)	T5174A	possibly damaging	Het
Fuca2	T	G	10: 13,388,391 (GRCm39)	V389G	probably damaging	Het
Gm14412	A	T	2: 177,008,898 (GRCm39)	H50Q	possibly damaging	Het
Gm5129	G	A	5: 29,940,732 (GRCm39)		probably benign	Het
Hif3a	T	C	7: 16,778,322 (GRCm39)	R437G	possibly damaging	Het
Hook3	T	C	8: 26,528,126 (GRCm39)	E588G	probably damaging	Het
Hs1bp3	A	G	12: 8,387,738 (GRCm39)	E301G	probably benign	Het
Icam2	A	G	11: 106,273,268 (GRCm39)	F15L	probably benign	Het
Ice2	T	C	9: 69,323,607 (GRCm39)	S701P	probably benign	Het
Igf2bp1	A	G	11: 95,864,996 (GRCm39)	V151A	possibly damaging	Het
Lig4	A	T	8: 10,022,436 (GRCm39)	L448Q	probably damaging	Het
Man2b1	G	C	8: 85,821,964 (GRCm39)	W726C	probably damaging	Het
Mepe	T	C	5: 104,474,957 (GRCm39)	S13P	possibly damaging	Het
Msh6	C	T	17: 88,297,771 (GRCm39)	H1264Y	probably damaging	Het
Ncoa1	A	T	12: 4,317,647 (GRCm39)	S1228R	probably benign	Het
Ndufa10	A	G	1: 92,367,614 (GRCm39)	Y339H	probably damaging	Het
Nup155	A	T	15: 8,187,244 (GRCm39)	H1391L	probably damaging	Het
Nutm2	A	G	13: 50,628,856 (GRCm39)	H640R	probably benign	Het
Or11i1	T	C	3: 106,729,027 (GRCm39)	I283V	probably benign	Het
Or2t1	T	C	14: 14,328,891 (GRCm38)	V260A	probably benign	Het
Or51ac3	T	A	7: 103,214,084 (GRCm39)	Y134F	probably damaging	Het
Or5b123	T	A	19: 13,596,945 (GRCm39)	C140S	probably damaging	Het
Or5w1b	G	T	2: 87,475,753 (GRCm39)	A238E	probably damaging	Het
Or6c211	T	A	10: 129,506,334 (GRCm39)	D18V	probably damaging	Het
Pde1c	C	T	6: 56,157,175 (GRCm39)	V162I	probably damaging	Het
Pdss2	A	T	10: 43,269,871 (GRCm39)	N238I	possibly damaging	Het
Pfas	C	T	11: 68,884,783 (GRCm39)	G473E	probably damaging	Het
Pkn1	A	G	8: 84,398,007 (GRCm39)	V795A	probably damaging	Het
Polq	A	G	16: 36,883,107 (GRCm39)	D1757G	possibly damaging	Het
Popdc3	T	C	10: 45,190,951 (GRCm39)	W21R	probably damaging	Het
Ptch1	T	G	13: 63,672,773 (GRCm39)	E944A	probably benign	Het
Ptpro	T	A	6: 137,420,592 (GRCm39)	V1007D	probably damaging	Het
Pwwp4a	G	T	X: 72,171,261 (GRCm39)	G218C	probably damaging	Het
Rfc1	G	T	5: 65,445,372 (GRCm39)	T412K	probably damaging	Het
Sap130	T	C	18: 31,831,627 (GRCm39)	S706P	possibly damaging	Het
Scgn	T	C	13: 24,175,047 (GRCm39)		probably benign	Het
Smad7	T	C	18: 75,527,225 (GRCm39)	V357A	probably damaging	Het
Snrnp48	G	T	13: 38,393,862 (GRCm39)	A56S	possibly damaging	Het
Sptbn1	G	T	11: 30,054,559 (GRCm39)	A2178E	probably benign	Het
Syn2	C	T	6: 115,255,212 (GRCm39)	T508I	probably benign	Het
Tedc2	T	A	17: 24,435,291 (GRCm39)	E366V	probably damaging	Het
Tedc2	C	A	17: 24,435,292 (GRCm39)	E366*	probably null	Het
Tmtc4	T	C	14: 123,158,677 (GRCm39)	N682S	probably benign	Het
Trpm7	T	C	2: 126,654,658 (GRCm39)	K1427E	probably benign	Het
Trrap	A	G	5: 144,739,854 (GRCm39)	I1118V	possibly damaging	Het
Tslp	A	T	18: 32,948,725 (GRCm39)	I37L	probably benign	Het
Ttll3	G	A	6: 113,375,731 (GRCm39)	V297M	probably damaging	Het
Ttn	T	C	2: 76,540,713 (GRCm39)	D34091G	possibly damaging	Het
Ube3a	T	C	7: 58,953,474 (GRCm39)	F803L	probably damaging	Het
Ubn1	A	G	16: 4,882,514 (GRCm39)	E325G	probably damaging	Het
Wfikkn2	A	G	11: 94,129,779 (GRCm39)	W121R	possibly damaging	Het
Zfp579	C	A	7: 4,996,520 (GRCm39)	E464*	probably null	Het
Zfp616	A	T	11: 73,974,413 (GRCm39)	L227F	possibly damaging	Het

Other mutations in Txndc11

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00562:Txndc11	APN	16	10,922,496 (GRCm39)	missense	probably damaging	0.96
IGL00563:Txndc11	APN	16	10,922,496 (GRCm39)	missense	probably damaging	0.96
IGL02576:Txndc11	APN	16	10,892,881 (GRCm39)	unclassified	probably benign
IGL03070:Txndc11	APN	16	10,893,151 (GRCm39)	missense	probably damaging	0.97
P0047:Txndc11	UTSW	16	10,909,661 (GRCm39)	splice site	probably benign
R0091:Txndc11	UTSW	16	10,905,968 (GRCm39)	missense	probably benign
R0448:Txndc11	UTSW	16	10,909,625 (GRCm39)	missense	probably damaging	0.99
R0796:Txndc11	UTSW	16	10,952,338 (GRCm39)	small deletion	probably benign
R0960:Txndc11	UTSW	16	10,909,453 (GRCm39)	missense	probably benign	0.28
R1184:Txndc11	UTSW	16	10,946,364 (GRCm39)	missense	probably benign	0.03
R1327:Txndc11	UTSW	16	10,934,678 (GRCm39)	missense	possibly damaging	0.86
R1441:Txndc11	UTSW	16	10,952,414 (GRCm39)	start gained	probably benign
R1515:Txndc11	UTSW	16	10,892,926 (GRCm39)	missense	probably damaging	0.98
R1699:Txndc11	UTSW	16	10,905,639 (GRCm39)	critical splice donor site	probably null
R1709:Txndc11	UTSW	16	10,946,565 (GRCm39)	nonsense	probably null
R1850:Txndc11	UTSW	16	10,906,268 (GRCm39)	missense	probably damaging	0.98
R3433:Txndc11	UTSW	16	10,906,052 (GRCm39)	missense	probably benign
R4468:Txndc11	UTSW	16	10,893,087 (GRCm39)	missense	probably benign	0.01
R4469:Txndc11	UTSW	16	10,893,087 (GRCm39)	missense	probably benign	0.01
R4652:Txndc11	UTSW	16	10,892,986 (GRCm39)	missense	probably benign
R4675:Txndc11	UTSW	16	10,902,745 (GRCm39)	missense	possibly damaging	0.65
R4697:Txndc11	UTSW	16	10,902,178 (GRCm39)	missense	probably damaging	0.99
R4907:Txndc11	UTSW	16	10,906,398 (GRCm39)	missense	probably benign	0.17
R5205:Txndc11	UTSW	16	10,946,529 (GRCm39)	missense	probably damaging	0.98
R5273:Txndc11	UTSW	16	10,946,487 (GRCm39)	missense	probably benign	0.07
R5865:Txndc11	UTSW	16	10,940,552 (GRCm39)	missense	probably damaging	1.00
R5873:Txndc11	UTSW	16	10,893,069 (GRCm39)	missense	probably damaging	1.00
R5941:Txndc11	UTSW	16	10,892,935 (GRCm39)	missense	probably benign	0.04
R6360:Txndc11	UTSW	16	10,902,656 (GRCm39)	missense	probably damaging	1.00
R6894:Txndc11	UTSW	16	10,906,009 (GRCm39)	missense	probably damaging	1.00
R7285:Txndc11	UTSW	16	10,902,163 (GRCm39)	missense	probably damaging	0.98
R7334:Txndc11	UTSW	16	10,946,425 (GRCm39)	missense	probably damaging	1.00
R7502:Txndc11	UTSW	16	10,905,742 (GRCm39)	missense	probably benign	0.08
R7660:Txndc11	UTSW	16	10,905,793 (GRCm39)	missense	probably damaging	1.00
R7677:Txndc11	UTSW	16	10,952,338 (GRCm39)	small deletion	probably benign
R7683:Txndc11	UTSW	16	10,902,099 (GRCm39)	missense	probably damaging	1.00
R8315:Txndc11	UTSW	16	10,893,465 (GRCm39)	missense	possibly damaging	0.70
R9395:Txndc11	UTSW	16	10,902,683 (GRCm39)	missense	probably benign	0.03
R9406:Txndc11	UTSW	16	10,893,498 (GRCm39)	missense	probably benign	0.45
R9494:Txndc11	UTSW	16	10,952,156 (GRCm39)	missense	probably damaging	1.00
X0020:Txndc11	UTSW	16	10,902,082 (GRCm39)	missense	possibly damaging	0.46

Predicted Primers

PCR Primer
(F):5'- AGCCTCACCTGCAAGTGAAC -3'
(R):5'- AGCTTGAGTGACTGCAAGCC -3'

Sequencing Primer
(F):5'- AGTGAACTTGAGGGCGAAG -3'
(R):5'- TGCGCAGAGTCGCTACAAG -3'

Posted On

2014-08-25